rna5862, rna5862 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5862
Unique Name	rna5862
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	336
Alignment location	CM002466.1:1014752..1017137 -

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Properties


Property Name	Value
Product	uncharacterized protein ycf23-like isoform 1
Orig transcript id	gnl\|cribi\|Naga_100234g9.1037.mrna
Orig protein id	gnl\|cribi\|Naga_100234g9.1037
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:1014752..1017137 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100234g9	gene5658	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5862	rna5862-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24833.1	cds5847	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:1014752..1017137-
coding sequence from alignment at CM002466.1:1014752..1017137-

mRNA sequence

>rna5862 ID=rna5862|Name=rna5862|organism=Nannochloropsis gaditana|type=mRNA|length=336bp
ATGCACGCTTTAGCGGGCGTCCCACCAAGTCTGCGGGCCGTCTTATCCTT
TGTAGAAATGTGGTGTGTTGTCTGGTCGCAATATGAAGCATGGGCCTTGC
TTCTTGTACCAAATTGTCAATTGTTTAAAGCATTTCTCTCCGATGGCTGT
TCTTTAGTTTCAGAGGGGCTACGAAAAATTAATAACGGATCGTATGTGGT
GAAATTTTATGTCATGAATCGATATTTTTCTAGCCCGACGTACATGATGG
GTGAATTTCCTCTCCTTCGGGGCAAGGATAGGTCATCTTTCGCTTTCTGT
GACCATGCTGGAGGCTACACGACTCGTCACAATTAG

protein sequence of rna5862

>rna5862-protein ID=rna5862-protein|Name=rna5862|organism=Nannochloropsis gaditana|type=polypeptide|length=392bp
MTYDEILLLLLYTGKSACFGLESFRPPLATYPAPSCPHALALPQPQLEHG
ISGHAVLSTGATARLHSPHVNMLGFELCRPNCTECFVIFASWLIPYSWSP
HSAPIPFPRALINMMRLITFTTFCIASTSAFNLFMATPAAGPRFHKETLR
PFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVK
KDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDIL
DLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPS
ISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMAL
VSGARGVGVGSAITKLDSEAGMATKVREIVRALQRNKAHMQN

mRNA from alignment at CM002466.1:1014752..1017137-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5862 ID=rna5862|Name=rna5862|organism=Nannochloropsis gaditana|type=mRNA|length=2386bp|location=Sequence derived from alignment at CM002466.1:1014752..1017137- (Nannochloropsis gaditana)
CCTGTGCCTCATCCTGAAGGGAGTCCTTCGCTTGCACTCGACGTACGTAC
TTGGCAATTTCTCATGCCCAGTCCCTTGGCACAATTGGAACACCTTCGCA
ACTCTGTATCCCCGCACCGTAAGCATGACTTATGACGAGATTTTGCTCCT
GCTATTATACACGGGAAAGTCAGCATGTTTTGGCTTGGAAAGCTTCAGGC
CCCCCCTCGCCACATATCCCGCCCCCTCTTGCCCCCATGCCCTCGCGCTA
CCTCAACCGCAACTTGAGCACGGCATTTCAGGCCACGCGGTCCTATCAAC
AGGTGCTACCGCGCGCCTGCACAGCCCACACGTAAATATGCTTGGCTTCG
AGCTATGCCGTCCAAATTGTACTGAATGTTTTGTCATATTTGCTTCATGG
CTTATTCCTTACTCCTGGTCGCCGCACAGTGCCCCCATTCCCTTTCCCAG
GGCCCTGATCAACATGATGCGCCTTATTACCTTTACTACCTTTTGCATCG
CCTCCACATCGGCTTTCAACCTCTTTATGGCTACTCCGGCCGCGGGTCCA
CGCTTTCACAAAGAGGTGAGTGCAGTTGCTTGCACCTTTTAGATTCTTTG
CTCAAGGCTACTGTCTCTGATGTCCTTTACTTGCTTTGTTCTTTGTTTCT
CCCCTTTCAGCCGATACACATTGCCCATTTTGTTTTCAATTCAAGAGATT
TGCTTTCTCTCTTTTTGCGTGGGAACTTTTCCTCTTGTCAAGGGAATAAA
AATGAGAAAGGCTAGGGATTGATATGGCGGACAGACGAAGAAGAGCCTGA
TTACGCTACGTTTCCTGATGTTTGCTTTCCGTCGTGGATAATTATCTCCG
CTCATTCACTACCTCCTGCAAATCCCAGACCTATCATTTCCCCCCTGGTA
CCATTCTCATTCCCGTGCGCTTCTCGCCTCTCTGCCCTTCCCCAAAGACA
TTGCGCCCTTTCCGAGAGGGTCGGGCCTTCAAGGTGATCGCCGGACTCAC
CAATTTCGACCCGGAATCCGTGGGCCGCATTGCGCGCGCGGCTGCCCTTG
GGGGTGCCACCCACGTGGATCTGGCCGCGGACCCCGATTTGGTCGCTCTT
GTCAAGAAGGATGCTTCCCGTGTGCGCACGGTGGTCTCCGCCATCGACCC
TGAGAAGTTCGTGCCGTGCGTGGAGGCGGGCGTGGACATGCTTGAGCTGG
GTAATTTCGACGCTTTCTACGCCTCGGGCCTGCGCTTCTCCTCCCTGGAC
ATTCTGGACCTGACCAGGCGGACCCGCGAGCTCTGCCCGCGCACGCCCCT
CTCCGTCACCATTCCCCACGTGCTTGCAATGGAGGAGCAGGCGCAGCTGG
CGCTCTCCCTCGCCACTCTGGGGGTGGACGTGATCCAGACGGAGGGTGCC
CCCTCCATTAGCACCATGAGCACCGGCATTCAGGCCTCGATAGAGAAGGC
TGCCCCCGCCCTAGCCTCGACGTATGTGCTCTCCCGGGCCCTGGCCGGCA
GGACGCATGTCATGGCTGCCTCGGGGATGAACGAGGTGACCGCGCCCATG
GCGCTGGTTTCGGGCGCGCGCGGGGTGGGAGTCGGGAGCGCCATCACAAA
GCTGGACTCGGAGGCTGGGATGGCAACGAAAGTGCGGGAGATCGTGCGGG
CGCTGCAACGAAACAAGGCGCACATGCAGAACTAAAGAGGGGATATGAGT
GCAGACGAATTTGAGGTATCTTCTCCCTGTTTTCTTGTGATCGCAGAGAA
AAGGTCTTTTCTTACGTGGAGAGGGAGTATTGTAAGGCTGAGTAGTACGG
AAGGTAGGAGTGAGGAGGGAATCACAAAAGGACCTGATGGAAAGTCTTGC
GGAACCCATCGTGCACGCCCATCATGATTCACAGCGGCAAAAACAATAGC
CGGCGATGGTTTGAAGAAGGTACAGAGAGTTTCGGTCCGTGTCATAGAAG
CAAAGCCATAATGTTCAGATGAGCCTCGTAAAAGGACGGTTCTTTTTTCC
ATTTTGCGTAGCACTGCGTAGCACTTCTTCTTTTCGAACAGAAAAGCATT
TCTACACTCTCTTGACTAATTGTGACGAGTCGTGTAGCCTCCAGCATGGT
CACAGAAAGCGAAAGATGACCTATCCTTGCCCCGAAGGAGAGGAAATTCA
CCCATCATGTACGTCGGGCTCTAACCACTGATTGACGCCTGCGTGACTGT
TTTTCCCTTAACCCCTAAAGACATGAATTCGTAGCACGCACAGAAAAATA
TCGATTCATGACATAAAATTTCACCACATACGATCCGTTATTAATTTTTC
GTAGCCCCTCTGAAACTAAAGAACAGCCATCGGAGAGAAATGCTTTAAAC
AATTGACAATTTGGTACAAGAAGCAAGGCCCATGCT

Coding sequence (CDS) from alignment at CM002466.1:1014752..1017137-

>rna5862 ID=rna5862|Name=rna5862|organism=Nannochloropsis gaditana|type=CDS|length=2358bp|location=Sequence derived from alignment at CM002466.1:1014752..1017137- (Nannochloropsis gaditana)
ACATTGCGCCCTTTCCGAGAGGGTCGGGCCTTCAAGGTGATCGCCGGACT
CACCAATTTCGACCCGGAATCCGTGGGCCGCATTGCGCGCGCGGCTGCCC
TTGGGGGTGCCACCCACGTGGATCTGGCCGCGGACCCCGATTTGGTCGCT
CTTGTCAAGAAGGATGCTTCCCGTGTGCGCACGGTGGTCTCCGCCATCGA
CCCTGAGAAGTTCGTGCCGTGCGTGGAGGCGGGCGTGGACATGCTTGAGC
TGGGTAATTTCGACGCTTTCTACGCCTCGGGCCTGCGCTTCTCCTCCCTG
GACATTCTGGACCTGACCAGGCGGACCCGCGAGCTCTGCCCGCGCACGCC
CCTCTCCGTCACCATTCCCCACGTGCTTGCAATGGAGGAGCAGGCGCAGC
TGGCGCTCTCCCTCGCCACTCTGGGGGTGGACGTGATCCAGACGGAGGGT
GCCCCCTCCATTAGCACCATGAGCACCGGCATTCAGGCCTCGATAGAGAA
GGCTGCCCCCGCCCTAGCCTCGACGTATGTGCTCTCCCGGGCCCTGGCCG
GCAGGACGCATGTCATGGCTGCCTCGGGGATGAACGAGGTGACCGCGCCC
ATGGCGCTGGTTTCGGGCGCGCGCGGGGTGGGAGTCGGGAGCGCCATCAC
AAAGCTGGACTCGGAGGCTGGGATGGCAACGAAAGTGCGGGAGATCGTGC
GGGCGCTGCAACGAAACAAGGCGCACATGCAGAACTAAATGACTTATGAC
GAGATTTTGCTCCTGCTATTATACACGGGAAAGTCAGCATGTTTTGGCTT
GGAAAGCTTCAGGCCCCCCCTCGCCACATATCCCGCCCCCTCTTGCCCCC
ATGCCCTCGCGCTACCTCAACCGCAACTTGAGCACGGCATTTCAGGCCAC
GCGGTCCTATCAACAGGTGCTACCGCGCGCCTGCACAGCCCACACGTAAA
TATGCTTGGCTTCGAGCTATGCCGTCCAAATTGTACTGAATGTTTTGTCA
TATTTGCTTCATGGCTTATTCCTTACTCCTGGTCGCCGCACAGTGCCCCC
ATTCCCTTTCCCAGGGCCCTGATCAACATGATGCGCCTTATTACCTTTAC
TACCTTTTGCATCGCCTCCACATCGGCTTTCAACCTCTTTATGGCTACTC
CGGCCGCGGGTCCACGCTTTCACAAAGAGACATTGCGCCCTTTCCGAGAG
GGTCGGGCCTTCAAGGTGATCGCCGGACTCACCAATTTCGACCCGGAATC
CGTGGGCCGCATTGCGCGCGCGGCTGCCCTTGGGGGTGCCACCCACGTGG
ATCTGGCCGCGGACCCCGATTTGGTCGCTCTTGTCAAGAAGGATGCTTCC
CGTGTGCGCACGGTGGTCTCCGCCATCGACCCTGAGAAGTTCGTGCCGTG
CGTGGAGGCGGGCGTGGACATGCTTGAGCTGGGTAATTTCGACGCTTTCT
ACGCCTCGGGCCTGCGCTTCTCCTCCCTGGACATTCTGGACCTGACCAGG
CGGACCCGCGAGCTCTGCCCGCGCACGCCCCTCTCCGTCACCATTCCCCA
CGTGCTTGCAATGGAGGAGCAGGCGCAGCTGGCGCTCTCCCTCGCCACTC
TGGGGGTGGACGTGATCCAGACGGAGGGTGCCCCCTCCATTAGCACCATG
AGCACCGGCATTCAGGCCTCGATAGAGAAGGCTGCCCCCGCCCTAGCCTC
GACGTATGTGCTCTCCCGGGCCCTGGCCGGCAGGACGCATGTCATGGCTG
CCTCGGGGATGAACGAGGTGACCGCGCCCATGGCGCTGGTTTCGGGCGCG
CGCGGGGTGGGAGTCGGGAGCGCCATCACAAAGCTGGACTCGGAGGCTGG
GATGGCAACGAAAGTGCGGGAGATCGTGCGGGCGCTGCAACGAAACAAGG
CGCACATGCAGAACTAAATGACTTATGACGAGATTTTGCTCCTGCTATTA
TACACGGGAAAGTCAGCATGTTTTGGCTTGGAAAGCTTCAGGCCCCCCCT
CGCCACATATCCCGCCCCCTCTTGCCCCCATGCCCTCGCGCTACCTCAAC
CGCAACTTGAGCACGGCATTTCAGGCCACGCGGTCCTATCAACAGGTGCT
ACCGCGCGCCTGCACAGCCCACACGTAAATATGCTTGGCTTCGAGCTATG
CCGTCCAAATTGTACTGAATGTTTTGTCATATTTGCTTCATGGCTTATTC
CTTACTCCTGGTCGCCGCACAGTGCCCCCATTCCCTTTCCCAGGGCCCTG
ATCAACATGATGCGCCTTATTACCTTTACTACCTTTTGCATCGCCTCCAC
ATCGGCTTTCAACCTCTTTATGGCTACTCCGGCCGCGGGTCCACGCTTTC
ACAAAGAG

Synonyms

Publications