EWM24833.1, cds5847 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|585106429|gb|EWM24833.1| (uncharacterized protein ycf23-like isoform 1 [Nannochloropsis gaditana]) HSP 1 Score: 799.66 bits (2064), Expect = 0.000e+0 Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 0
Query: 1 MTYDEILLLLLYTGKSACFGLESFRPPLATYPAPSCPHALALPQPQLEHGISGHAVLSTGATARLHSPHVNMLGFELCRPNCTECFVIFASWLIPYSWSPHSAPIPFPRALINMMRLITFTTFCIASTSAFNLFMATPAAGPRFHKETLRPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRALQRNKAHMQN 392
MTYDEILLLLLYTGKSACFGLESFRPPLATYPAPSCPHALALPQPQLEHGISGHAVLSTGATARLHSPHVNMLGFELCRPNCTECFVIFASWLIPYSWSPHSAPIPFPRALINMMRLITFTTFCIASTSAFNLFMATPAAGPRFHKETLRPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRALQRNKAHMQN
Sbjct: 1 MTYDEILLLLLYTGKSACFGLESFRPPLATYPAPSCPHALALPQPQLEHGISGHAVLSTGATARLHSPHVNMLGFELCRPNCTECFVIFASWLIPYSWSPHSAPIPFPRALINMMRLITFTTFCIASTSAFNLFMATPAAGPRFHKETLRPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRALQRNKAHMQN 392
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|499306389|ref|WP_010997164.1| (hypothetical protein [Nostoc sp. PCC 7120] >gi|17132107|dbj|BAB74712.1| all3013 [Nostoc sp. PCC 7120] >gi|1210149546|dbj|BAY68638.1| hypothetical protein NIES23_14260 [Anabaena variabilis NIES-23]) HSP 1 Score: 235.343 bits (599), Expect = 2.739e-72 Identity = 126/235 (53.62%), Postives = 159/235 (67.66%), Query Frame = 0
Query: 150 RPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRALQ 384
R F GR KVI+GL NFD +SV I +AA LGGAT VD+AAD LV L KK + VSA+DPEKFV VEAG D++E+GNFD FYA G RF + ++L LT++TR L P LSVT+PH+L +++Q QLA L G D+IQTEG S G IEKAAP LA+ Y +SRA++ V+ ASG++ VTAP+A+ SGA GVGVGSAI +L+SE M VR +V AL+
Sbjct: 9 RAFTNGRVLKVISGLNNFDADSVAAIIKAAELGGATFVDIAADAGLVQLAKK-LINLPVCVSAVDPEKFVTAVEAGADLIEIGNFDTFYAQGRRFEAAEVLALTKQTRALLPEITLSVTVPHILELDQQVQLAEELVKAGADIIQTEGGTSSQPTHPGSLGLIEKAAPTLAAAYEISRAVS--VPVLCASGISNVTAPLAIASGAAGVGVGSAINQLNSEVAMIAAVRGLVEALK 240
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|75700846|gb|ABA20522.1| (Protein of unknown function DUF561 [Anabaena variabilis ATCC 29413]) HSP 1 Score: 234.958 bits (598), Expect = 3.830e-72 Identity = 125/234 (53.42%), Postives = 160/234 (68.38%), Query Frame = 0
Query: 150 RPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRAL 383
R F GR KVI+GL NFD +SV I +AA LGGAT VD+AAD LV L K+ + VSA+DPEKFV VEAG D++E+GNFD+FYA G RF + ++L LT++TR L P LSVT+PH+L +++Q QLA L G D+IQTEG S +G IEKAAP LA+ Y +SRA++ V+ ASG++ VTAP+A+ SGA GVGVGSAI +L+SE M VR +V AL
Sbjct: 9 RAFTNGRVLKVISGLNNFDADSVAAIIKAAELGGATFVDIAADAGLVRLAKR-LINLPVCVSAVDPEKFVTVVEAGADLIEIGNFDSFYAQGRRFEAAEVLALTKQTRALLPEITLSVTVPHILELDQQVQLAEELVKAGADIIQTEGGTSSQPTHSGSLGLIEKAAPTLAAAYEISRAVS--VPVLCASGISNVTAPLAIASGAAGVGVGSAINQLNSEVAMIAAVRGLVEAL 239
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|298705612|emb|CBJ28863.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 236.113 bits (601), Expect = 4.408e-72 Identity = 137/250 (54.80%), Postives = 177/250 (70.80%), Query Frame = 0
Query: 134 FMATPAAGPRFHKETLRPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRAL 383
F +PA R + L PF+ G+A KVI+GL FD + V ++ARAAA GG TH+D+A DPDLV K S V VSA+DPE F CV+AG +M+ELGNFD FY GL FS+ D+L++TR+TR L P TPLSVT+PH L +++Q LA+ L LGVDVIQTEG S+ GIQ +IE+AAP LA+ + +S+A++ VMAASG+++VTAPMAL +GARGVGVGSA+ KL+SE GM VR I A+
Sbjct: 19 FCFSPA---RMSGDVLAPFQAGKALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDPDLVRAAKA-VSNVPVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQGLTFSAEDVLEMTRKTRALLPTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVS--IPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAM 262
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|1057113375|ref|WP_068509130.1| (DUF561 domain-containing protein [Leptolyngbya sp. O-77] >gi|984536629|dbj|BAU41609.1| hypothetical protein O77CONTIG1_01421 [Leptolyngbya sp. O-77]) HSP 1 Score: 232.646 bits (592), Expect = 3.153e-71 Identity = 125/232 (53.88%), Postives = 160/232 (68.97%), Query Frame = 0
Query: 152 FREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRAL 383
++ A KVI+GLTNF+ + V I RAA GGAT VD+AA DLV VK S + VSA+DPE FVPCVEAG D++E+GNFDAFYA G RF + ++L+LTRRTR L P+ LSVT+PHVL +++Q QLA L G D+IQTEG S G +EKAAP LA+ Y +S+A+ R V+ ASG++ VTAP+A+ +GA GVGVGSAI +L+SE M VR IV A+
Sbjct: 11 LQQRTALKVISGLTNFEGDRVCAIVRAAEQGGATFVDIAASADLVRRVKGLIS-LPVCVSAVDPEAFVPCVEAGADLIEIGNFDAFYAQGRRFEAAEVLELTRRTRALLPQVTLSVTVPHVLTLDQQVQLAEELVNAGADLIQTEGGTSSQPTHPGTLGLMEKAAPTLAAAYEISKAV--RVPVLCASGLSSVTAPLAIAAGASGVGVGSAINQLNSEVAMVAAVRSIVEAI 239
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|505021214|ref|WP_015208316.1| (DUF561 domain-containing protein [Cylindrospermum stagnale] >gi|428259113|gb|AFZ25063.1| tryptophan synthase alpha chain [Cylindrospermum stagnale PCC 7417]) HSP 1 Score: 232.261 bits (591), Expect = 3.872e-71 Identity = 123/244 (50.41%), Postives = 162/244 (66.39%), Query Frame = 0
Query: 144 FHKETLRPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRALQRNK 387
H R F KVI+GL NF+ E+VG IA++A +GGAT VD+AADPDLV LVK + VSA++PEKFV V AG D++E+GNFD+FYA G RF + ++L LT++TR L P LSVT+PH+L +++Q QLA L G D+IQTEG S G IEKAAP LA+ Y ++RA++ V+ ASG++ VTAP+A+ SGA G+GVGSAI +L+SE M VR +V AL K
Sbjct: 3 MHSSLQRAFTNRSVLKVISGLNNFNAENVGAIAKSAEIGGATFVDIAADPDLVRLVKS-LINLPVCVSAVEPEKFVASVAAGADLIEIGNFDSFYAQGRRFEAEEVLALTQQTRALLPEITLSVTVPHILTLDQQVQLAEELVKAGADIIQTEGGTSSQPTHAGTLGLIEKAAPTLAAAYEIARAVS--VPVLCASGISSVTAPLAIASGASGIGVGSAINQLNSEIAMIAAVRGLVEALATAK 243
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|1210191897|dbj|BAZ10951.1| (hypothetical protein NIES4071_27750 [Calothrix sp. NIES-4071] >gi|1210238078|dbj|BAZ57097.1| hypothetical protein NIES4105_27690 [Calothrix sp. NIES-4105]) HSP 1 Score: 232.261 bits (591), Expect = 5.342e-71 Identity = 124/240 (51.67%), Postives = 159/240 (66.25%), Query Frame = 0
Query: 144 FHKETLRPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRAL 383
H R F RA KVI+GL NFDP +V + RAA LGGAT VD+AADP LV L K + + VSA++PEKF+ V AG D++E+GNFD+FYA G RF + ++L LT +TREL P LSVT+PH+L +++Q QLA L G D+IQTEG + G IEKAAP LA+ Y +SRA+A V+ ASG++ VTAP+A +GA GVGVGSA+ +L+SE M VR IV AL
Sbjct: 3 MHSTLQRAFTIRRALKVISGLNNFDPYNVAAVVRAAELGGATFVDIAADPKLVKLAKS-LTNLPICVSAVEPEKFISSVAAGADLIEIGNFDSFYAQGRRFEAAEVLALTNQTRELLPNVTLSVTVPHILTLDKQVQLAEDLVQAGADIIQTEGGINTKPTHGGTIGLIEKAAPTLAAAYEISRAVA--VPVLCASGISSVTAPLATSAGAAGVGVGSAVNQLNSEVAMIAAVRGIVEAL 239
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|1213734875|gb|OWY67547.1| (hypothetical protein B7486_31195 [cyanobacterium TDX16]) HSP 1 Score: 231.876 bits (590), Expect = 7.158e-71 Identity = 124/242 (51.24%), Postives = 162/242 (66.94%), Query Frame = 0
Query: 142 PRFHKETLRPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRAL 383
P H+ F +GRA K+I+GL N D +SV AA GGAT VD+AAD +LV +VKK + + VSA+DPEKFV CV AG D++E+GNFD+FYA G RF + ++L LT TR L P LSVT+PH+L ++ Q QLA L G D+IQTEG S S + +G +EKAAP LA+ Y +SRA++ V+ ASG++ VTAPMA+ SGA GVGVGSAI +L+SE M VR +V +L
Sbjct: 5 PLLHQ----AFAQGRALKIISGLNNLDRQSVAATVNAADRGGATFVDIAADVELVQMVKK-LTNLPICVSAVDPEKFVTCVAAGADLIEIGNFDSFYAQGRRFEAEEVLALTEITRSLLPEITLSVTVPHILELDRQVQLAEELVKAGADIIQTEGGTSSSPVHSGTLGLVEKAAPTLAAAYEISRAVS--VPVLCASGISNVTAPMAIASGAAGVGVGSAINQLNSEVAMIAAVRSLVESL 239
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|505008249|ref|WP_015195351.1| (DUF561 domain-containing protein [Stanieria cyanosphaera] >gi|428271756|gb|AFZ37697.1| protein of unknown function DUF561 [Stanieria cyanosphaera PCC 7437]) HSP 1 Score: 231.491 bits (589), Expect = 8.523e-71 Identity = 121/240 (50.42%), Postives = 162/240 (67.50%), Query Frame = 0
Query: 144 FHKETLRPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRAL 383
H + F + A KVI+GL NFD V I +AAA GGAT VD+AA+P LV +++ + VSA++P+ FV VEAG D++E+GNFD+FYA G RF + ++LDLT +TR L P LSVT+PH+LA++EQ QLA L G ++IQTEG SI G+Q IEKAAP LA+T+ +SRA+ V+ ASG++ VTAP+A+ +GA GVG+GSAI +LD+E M VR IV AL
Sbjct: 3 MHPHLRKAFEQNNALKVISGLNNFDGARVATIVKAAAAGGATFVDIAAEPSLVESIRQ-LINLPICVSAVEPKLFVSAVEAGADLIEIGNFDSFYAQGRRFEAPEVLDLTYKTRALLPDVTLSVTVPHILALDEQVQLAEELVKAGANIIQTEGGTSIHPTHPGVQGLIEKAAPTLAATHAISRAV--DVPVLCASGLSSVTAPLAIAAGASGVGIGSAINQLDNEIAMVAAVRSIVEAL 239
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|1214781165|ref|WP_088892319.1| (hypothetical protein [Leptolyngbya ohadii]) HSP 1 Score: 230.72 bits (587), Expect = 1.936e-70 Identity = 119/232 (51.29%), Postives = 160/232 (68.97%), Query Frame = 0
Query: 152 FREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRAL 383
F++ A KVI+GLTNFD + V + +AA GGAT VD+AADPDLV L K+ + + VSA+DPEKFV +EAG D++E+GNFD FYA G+RF + ++L+LT+RTR L P LSVT+PH+L +++Q QLA +L G D+IQTEG S G IEKAAP LA+ +SRA+ V+ ASG++ VTAP+A+ +GA G+GVGSAI +L+ E M VR +V AL
Sbjct: 11 FQQANALKVISGLTNFDADRVAAVVKAADRGGATFVDIAADPDLVRLAKQ-LTHLPVCVSAVDPEKFVAAIEAGADLIEIGNFDPFYAQGIRFEAAEVLELTQRTRALLPHVTLSVTVPHILELDQQVQLAEALVQAGADIIQTEGGTSSQPTHPGTLGLIEKAAPTLAAASEISRAVT--VPVLCASGLSSVTAPLAIAAGASGIGVGSAINRLNDEIAMVAVVRSLVEAL 239 The following BLAST results are available for this feature:
BLAST of EWM24833.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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