EWM24833.1, cds5847 (CDS) Nannochloropsis gaditana

Overview
NameEWM24833.1
Unique Namecds5847
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:1016573..1017013 -
Alignment locationCM002466.1:1015453..1016190 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24833.1
Productuncharacterized protein ycf23-like isoform 1
Orig transcript idgnl|cribi|Naga_100234g9.1037.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:1016573..1017013 -
CM002466.1supercontigCM002466.1:1015453..1016190 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR013785Aldolase_TIM
IPR007570Uncharacterised_Ycf23
Homology
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|585106429|gb|EWM24833.1| (uncharacterized protein ycf23-like isoform 1 [Nannochloropsis gaditana])

HSP 1 Score: 799.66 bits (2064), Expect = 0.000e+0
Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 0
Query:    1 MTYDEILLLLLYTGKSACFGLESFRPPLATYPAPSCPHALALPQPQLEHGISGHAVLSTGATARLHSPHVNMLGFELCRPNCTECFVIFASWLIPYSWSPHSAPIPFPRALINMMRLITFTTFCIASTSAFNLFMATPAAGPRFHKETLRPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRALQRNKAHMQN 392
            MTYDEILLLLLYTGKSACFGLESFRPPLATYPAPSCPHALALPQPQLEHGISGHAVLSTGATARLHSPHVNMLGFELCRPNCTECFVIFASWLIPYSWSPHSAPIPFPRALINMMRLITFTTFCIASTSAFNLFMATPAAGPRFHKETLRPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRALQRNKAHMQN
Sbjct:    1 MTYDEILLLLLYTGKSACFGLESFRPPLATYPAPSCPHALALPQPQLEHGISGHAVLSTGATARLHSPHVNMLGFELCRPNCTECFVIFASWLIPYSWSPHSAPIPFPRALINMMRLITFTTFCIASTSAFNLFMATPAAGPRFHKETLRPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRALQRNKAHMQN 392          
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|499306389|ref|WP_010997164.1| (hypothetical protein [Nostoc sp. PCC 7120] >gi|17132107|dbj|BAB74712.1| all3013 [Nostoc sp. PCC 7120] >gi|1210149546|dbj|BAY68638.1| hypothetical protein NIES23_14260 [Anabaena variabilis NIES-23])

HSP 1 Score: 235.343 bits (599), Expect = 2.739e-72
Identity = 126/235 (53.62%), Postives = 159/235 (67.66%), Query Frame = 0
Query:  150 RPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRALQ 384
            R F  GR  KVI+GL NFD +SV  I +AA LGGAT VD+AAD  LV L KK    +   VSA+DPEKFV  VEAG D++E+GNFD FYA G RF + ++L LT++TR L P   LSVT+PH+L +++Q QLA  L   G D+IQTEG  S      G    IEKAAP LA+ Y +SRA++    V+ ASG++ VTAP+A+ SGA GVGVGSAI +L+SE  M   VR +V AL+
Sbjct:    9 RAFTNGRVLKVISGLNNFDADSVAAIIKAAELGGATFVDIAADAGLVQLAKK-LINLPVCVSAVDPEKFVTAVEAGADLIEIGNFDTFYAQGRRFEAAEVLALTKQTRALLPEITLSVTVPHILELDQQVQLAEELVKAGADIIQTEGGTSSQPTHPGSLGLIEKAAPTLAAAYEISRAVS--VPVLCASGISNVTAPLAIASGAAGVGVGSAINQLNSEVAMIAAVRGLVEALK 240          
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|75700846|gb|ABA20522.1| (Protein of unknown function DUF561 [Anabaena variabilis ATCC 29413])

HSP 1 Score: 234.958 bits (598), Expect = 3.830e-72
Identity = 125/234 (53.42%), Postives = 160/234 (68.38%), Query Frame = 0
Query:  150 RPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRAL 383
            R F  GR  KVI+GL NFD +SV  I +AA LGGAT VD+AAD  LV L K+    +   VSA+DPEKFV  VEAG D++E+GNFD+FYA G RF + ++L LT++TR L P   LSVT+PH+L +++Q QLA  L   G D+IQTEG  S     +G    IEKAAP LA+ Y +SRA++    V+ ASG++ VTAP+A+ SGA GVGVGSAI +L+SE  M   VR +V AL
Sbjct:    9 RAFTNGRVLKVISGLNNFDADSVAAIIKAAELGGATFVDIAADAGLVRLAKR-LINLPVCVSAVDPEKFVTVVEAGADLIEIGNFDSFYAQGRRFEAAEVLALTKQTRALLPEITLSVTVPHILELDQQVQLAEELVKAGADIIQTEGGTSSQPTHSGSLGLIEKAAPTLAAAYEISRAVS--VPVLCASGISNVTAPLAIASGAAGVGVGSAINQLNSEVAMIAAVRGLVEAL 239          
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|298705612|emb|CBJ28863.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 236.113 bits (601), Expect = 4.408e-72
Identity = 137/250 (54.80%), Postives = 177/250 (70.80%), Query Frame = 0
Query:  134 FMATPAAGPRFHKETLRPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRAL 383
            F  +PA   R   + L PF+ G+A KVI+GL  FD + V ++ARAAA GG TH+D+A DPDLV   K   S V   VSA+DPE F  CV+AG +M+ELGNFD FY  GL FS+ D+L++TR+TR L P TPLSVT+PH L +++Q  LA+ L  LGVDVIQTEG  S+     GIQ +IE+AAP LA+ + +S+A++    VMAASG+++VTAPMAL +GARGVGVGSA+ KL+SE GM   VR I  A+
Sbjct:   19 FCFSPA---RMSGDVLAPFQAGKALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDPDLVRAAKA-VSNVPVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQGLTFSAEDVLEMTRKTRALLPTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVS--IPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAM 262          
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|1057113375|ref|WP_068509130.1| (DUF561 domain-containing protein [Leptolyngbya sp. O-77] >gi|984536629|dbj|BAU41609.1| hypothetical protein O77CONTIG1_01421 [Leptolyngbya sp. O-77])

HSP 1 Score: 232.646 bits (592), Expect = 3.153e-71
Identity = 125/232 (53.88%), Postives = 160/232 (68.97%), Query Frame = 0
Query:  152 FREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRAL 383
             ++  A KVI+GLTNF+ + V  I RAA  GGAT VD+AA  DLV  VK   S +   VSA+DPE FVPCVEAG D++E+GNFDAFYA G RF + ++L+LTRRTR L P+  LSVT+PHVL +++Q QLA  L   G D+IQTEG  S      G    +EKAAP LA+ Y +S+A+  R  V+ ASG++ VTAP+A+ +GA GVGVGSAI +L+SE  M   VR IV A+
Sbjct:   11 LQQRTALKVISGLTNFEGDRVCAIVRAAEQGGATFVDIAASADLVRRVKGLIS-LPVCVSAVDPEAFVPCVEAGADLIEIGNFDAFYAQGRRFEAAEVLELTRRTRALLPQVTLSVTVPHVLTLDQQVQLAEELVNAGADLIQTEGGTSSQPTHPGTLGLMEKAAPTLAAAYEISKAV--RVPVLCASGLSSVTAPLAIAAGASGVGVGSAINQLNSEVAMVAAVRSIVEAI 239          
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|505021214|ref|WP_015208316.1| (DUF561 domain-containing protein [Cylindrospermum stagnale] >gi|428259113|gb|AFZ25063.1| tryptophan synthase alpha chain [Cylindrospermum stagnale PCC 7417])

HSP 1 Score: 232.261 bits (591), Expect = 3.872e-71
Identity = 123/244 (50.41%), Postives = 162/244 (66.39%), Query Frame = 0
Query:  144 FHKETLRPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRALQRNK 387
             H    R F      KVI+GL NF+ E+VG IA++A +GGAT VD+AADPDLV LVK     +   VSA++PEKFV  V AG D++E+GNFD+FYA G RF + ++L LT++TR L P   LSVT+PH+L +++Q QLA  L   G D+IQTEG  S      G    IEKAAP LA+ Y ++RA++    V+ ASG++ VTAP+A+ SGA G+GVGSAI +L+SE  M   VR +V AL   K
Sbjct:    3 MHSSLQRAFTNRSVLKVISGLNNFNAENVGAIAKSAEIGGATFVDIAADPDLVRLVKS-LINLPVCVSAVEPEKFVASVAAGADLIEIGNFDSFYAQGRRFEAEEVLALTQQTRALLPEITLSVTVPHILTLDQQVQLAEELVKAGADIIQTEGGTSSQPTHAGTLGLIEKAAPTLAAAYEIARAVS--VPVLCASGISSVTAPLAIASGASGIGVGSAINQLNSEIAMIAAVRGLVEALATAK 243          
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|1210191897|dbj|BAZ10951.1| (hypothetical protein NIES4071_27750 [Calothrix sp. NIES-4071] >gi|1210238078|dbj|BAZ57097.1| hypothetical protein NIES4105_27690 [Calothrix sp. NIES-4105])

HSP 1 Score: 232.261 bits (591), Expect = 5.342e-71
Identity = 124/240 (51.67%), Postives = 159/240 (66.25%), Query Frame = 0
Query:  144 FHKETLRPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRAL 383
             H    R F   RA KVI+GL NFDP +V  + RAA LGGAT VD+AADP LV L K   + +   VSA++PEKF+  V AG D++E+GNFD+FYA G RF + ++L LT +TREL P   LSVT+PH+L +++Q QLA  L   G D+IQTEG  +      G    IEKAAP LA+ Y +SRA+A    V+ ASG++ VTAP+A  +GA GVGVGSA+ +L+SE  M   VR IV AL
Sbjct:    3 MHSTLQRAFTIRRALKVISGLNNFDPYNVAAVVRAAELGGATFVDIAADPKLVKLAKS-LTNLPICVSAVEPEKFISSVAAGADLIEIGNFDSFYAQGRRFEAAEVLALTNQTRELLPNVTLSVTVPHILTLDKQVQLAEDLVQAGADIIQTEGGINTKPTHGGTIGLIEKAAPTLAAAYEISRAVA--VPVLCASGISSVTAPLATSAGAAGVGVGSAVNQLNSEVAMIAAVRGIVEAL 239          
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|1213734875|gb|OWY67547.1| (hypothetical protein B7486_31195 [cyanobacterium TDX16])

HSP 1 Score: 231.876 bits (590), Expect = 7.158e-71
Identity = 124/242 (51.24%), Postives = 162/242 (66.94%), Query Frame = 0
Query:  142 PRFHKETLRPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRAL 383
            P  H+     F +GRA K+I+GL N D +SV     AA  GGAT VD+AAD +LV +VKK  + +   VSA+DPEKFV CV AG D++E+GNFD+FYA G RF + ++L LT  TR L P   LSVT+PH+L ++ Q QLA  L   G D+IQTEG  S S + +G    +EKAAP LA+ Y +SRA++    V+ ASG++ VTAPMA+ SGA GVGVGSAI +L+SE  M   VR +V +L
Sbjct:    5 PLLHQ----AFAQGRALKIISGLNNLDRQSVAATVNAADRGGATFVDIAADVELVQMVKK-LTNLPICVSAVDPEKFVTCVAAGADLIEIGNFDSFYAQGRRFEAEEVLALTEITRSLLPEITLSVTVPHILELDRQVQLAEELVKAGADIIQTEGGTSSSPVHSGTLGLVEKAAPTLAAAYEISRAVS--VPVLCASGISNVTAPMAIASGAAGVGVGSAINQLNSEVAMIAAVRSLVESL 239          
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|505008249|ref|WP_015195351.1| (DUF561 domain-containing protein [Stanieria cyanosphaera] >gi|428271756|gb|AFZ37697.1| protein of unknown function DUF561 [Stanieria cyanosphaera PCC 7437])

HSP 1 Score: 231.491 bits (589), Expect = 8.523e-71
Identity = 121/240 (50.42%), Postives = 162/240 (67.50%), Query Frame = 0
Query:  144 FHKETLRPFREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRAL 383
             H    + F +  A KVI+GL NFD   V  I +AAA GGAT VD+AA+P LV  +++    +   VSA++P+ FV  VEAG D++E+GNFD+FYA G RF + ++LDLT +TR L P   LSVT+PH+LA++EQ QLA  L   G ++IQTEG  SI     G+Q  IEKAAP LA+T+ +SRA+     V+ ASG++ VTAP+A+ +GA GVG+GSAI +LD+E  M   VR IV AL
Sbjct:    3 MHPHLRKAFEQNNALKVISGLNNFDGARVATIVKAAAAGGATFVDIAAEPSLVESIRQ-LINLPICVSAVEPKLFVSAVEAGADLIEIGNFDSFYAQGRRFEAPEVLDLTYKTRALLPDVTLSVTVPHILALDEQVQLAEELVKAGANIIQTEGGTSIHPTHPGVQGLIEKAAPTLAATHAISRAV--DVPVLCASGLSSVTAPLAIAAGASGVGIGSAINQLDNEIAMVAAVRSIVEAL 239          
BLAST of EWM24833.1 vs. NCBI_GenBank
Match: gi|1214781165|ref|WP_088892319.1| (hypothetical protein [Leptolyngbya ohadii])

HSP 1 Score: 230.72 bits (587), Expect = 1.936e-70
Identity = 119/232 (51.29%), Postives = 160/232 (68.97%), Query Frame = 0
Query:  152 FREGRAFKVIAGLTNFDPESVGRIARAAALGGATHVDLAADPDLVALVKKDASRVRTVVSAIDPEKFVPCVEAGVDMLELGNFDAFYASGLRFSSLDILDLTRRTRELCPRTPLSVTIPHVLAMEEQAQLALSLATLGVDVIQTEGAPSISTMSTGIQASIEKAAPALASTYVLSRALAGRTHVMAASGMNEVTAPMALVSGARGVGVGSAITKLDSEAGMATKVREIVRAL 383
            F++  A KVI+GLTNFD + V  + +AA  GGAT VD+AADPDLV L K+  + +   VSA+DPEKFV  +EAG D++E+GNFD FYA G+RF + ++L+LT+RTR L P   LSVT+PH+L +++Q QLA +L   G D+IQTEG  S      G    IEKAAP LA+   +SRA+     V+ ASG++ VTAP+A+ +GA G+GVGSAI +L+ E  M   VR +V AL
Sbjct:   11 FQQANALKVISGLTNFDADRVAAVVKAADRGGATFVDIAADPDLVRLAKQ-LTHLPVCVSAVDPEKFVAAIEAGADLIEIGNFDPFYAQGIRFEAAEVLELTQRTRALLPHVTLSVTVPHILELDQQVQLAEALVQAGADIIQTEGGTSSQPTHPGTLGLIEKAAPTLAAASEISRAVT--VPVLCASGLSSVTAPLAIAAGASGIGVGSAINRLNDEIAMVAVVRSLVEAL 239          
The following BLAST results are available for this feature:
BLAST of EWM24833.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106429|gb|EWM24833.1|0.000e+0100.00uncharacterized protein ycf23-like isoform 1 [Nann... [more]
gi|499306389|ref|WP_010997164.1|2.739e-7253.62hypothetical protein [Nostoc sp. PCC 7120] >gi|171... [more]
gi|75700846|gb|ABA20522.1|3.830e-7253.42Protein of unknown function DUF561 [Anabaena varia... [more]
gi|298705612|emb|CBJ28863.1|4.408e-7254.80conserved unknown protein [Ectocarpus siliculosus][more]
gi|1057113375|ref|WP_068509130.1|3.153e-7153.88DUF561 domain-containing protein [Leptolyngbya sp.... [more]
gi|505021214|ref|WP_015208316.1|3.872e-7150.41DUF561 domain-containing protein [Cylindrospermum ... [more]
gi|1210191897|dbj|BAZ10951.1|5.342e-7151.67hypothetical protein NIES4071_27750 [Calothrix sp.... [more]
gi|1213734875|gb|OWY67547.1|7.158e-7151.24hypothetical protein B7486_31195 [cyanobacterium T... [more]
gi|505008249|ref|WP_015195351.1|8.523e-7150.42DUF561 domain-containing protein [Stanieria cyanos... [more]
gi|1214781165|ref|WP_088892319.1|1.936e-7051.29hypothetical protein [Leptolyngbya ohadii][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5862rna5862Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications