|
|
Properties
| Property Name | Value |
|---|
| Product | adp-ribosylation factor 1 |
| Orig transcript id | gnl|cribi|Naga_100234g4.1038.mrna |
| Orig protein id | gnl|cribi|Naga_100234g4.1038 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:1003436..1004928 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5857 ID=rna5857|Name=rna5857|organism=Nannochloropsis gaditana|type=mRNA|length=1355bp
CTTGTCAATTATCCCACCAGCTATTTCCACCAACATGGCTCCCTTTTACC
CTTTTCGAACGTTCACAGCATTAAAAAAATATGGGACAGCTCATGACGCG
GGTCCTTGACGTCCTTTGGGGCAAAGAAGACAGACGTTTGTTGATGCTGG
GCCTCGACGCGGCGGGAAAGACCACCATCCTCTACCGCCTCCAGCTGGGC
GAGGACGTGCACTCCATCCCCACGATCGGGTTCAACGTTGAGAAAGTCGA
GTATCGGAATATTTCGTTCACAATTTGGGACGTTGGAGGTCAAGATCGCT
TGCGAAAGCTATGGCGGCACTACTACAAGGACAACGACGCCCTCATCTTC
GTCATCGATTCTGCCGACCGCGCGCGCCTGCACGAGGCGCGGTCCGAACT
CCACCACTTGCTCTCTGAGCCCCAGCTCCTGGACTCCATCCTCCTTGTCT
ACGCCAACAAGGCAGATTTACCGCAGGCGATTTCCGTGCAAGAAATGGCG
CGGCTGTTGCAATTAGACAATGTAGGGGCTCTTTTGGAGGGAGGGAGGGA
GGAAGGGAAAGGATACAGAGATGTGGACAGAGACGCGGACCATTATTTGA
GAGAGGATGAAGGCTCCCTTGTGATGCTTTGTCGGCCGCTTGATGAGCTC
ACTCTGTGTATTGTTTAGTCCCATTGACTGCTTTGAACTGGATTTTGACT
CCCCTCTCGCCGGCCTCCCCGTGCCCTCCAACCCTTTCCTGCCCCCCTCT
CCCCGTCCCGCCCTCCCTCCCTCCTCCCCTCCGCCTCCCCAGGTCGCCAA
GGGCAGGCCATGGTACATTCAACCTTCGTGCGCAATGACCGGTGACGGCC
TGGTCGAGGGCCTGGACTGGCTCTCCGAGAAACTCAAGGAGGTGGGCTCT
CACACGTATCACGGGATCAGACAGGACGAGACGATCCAGCCGGCAGCTGC
CTTTAGACCGGCCGCGGGCTCGTTGGAAGGGCCTGCGGGGGGGGGATGGT
AGGAGCGGAAGGAGGACAGGAGGAAGGGAGGGAGGATGTGCGGTAGGAGG
ACGCGAGGGAGGGTGGAAGGAGGGCAGGAACCAGTTTGCCCCGCCGCCTG
GAGCGATGAGGGTTCAGGGGGGCGAGTGGTTGGGAGGAAAGCGAGAGGAC
GTGCACCTGGCGGTGGCCGAGTGTGGTTTGGGGCTGTTGGGTTTGCTGGG
GGAGGCTTCTGTGTCGATAGAAGGAGGGAGAGAAGGCGGCGGAGGGATCG
GGGGCGGGGGGAGGGGGAAGGACCCACAACAGAAGCGTACAACATAGACA
GGGCGAGCGTCGGGAAGGGGACCGACAGAAAGCTGACAGAAATAATTCAT
GTTGA back to topprotein sequence of rna5857 >rna5857-protein ID=rna5857-protein|Name=rna5857|organism=Nannochloropsis gaditana|type=polypeptide|length=192bp
MGGLLSRVLDTLSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIP
TIGFNVETVNYKNICFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADR
DRFDEAKTELLSLLSEHQLSHSTILVFANKADLPTAIPVVEIAQLLQLDR
AAKGRHWYIQPSCATTGDGLVEGLDWLSCKLKEAGPRPPSSA back to topmRNA from alignment at CM002466.1:1003436..1004928+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5857 ID=rna5857|Name=rna5857|organism=Nannochloropsis gaditana|type=mRNA|length=1493bp|location=Sequence derived from alignment at CM002466.1:1003436..1004928+ (Nannochloropsis gaditana)
ATGGGAGGCTTGTTGTCGCGGGTCCTGGACACGCTGTCcgcgctgggagg
gaagcaggaaaagcgAATTCTGTAAGTGGATGGTCACGCAGGGAAGCAAG
CGAAAAACGTGTCTTGGGTAAAGATGTTTCAATGGGCATCTCAAGCTTTT
CCTGCACATGTGTGGAGCGTGCAACGAACCATATAAGACTTAtaaagtgg
aggaaagggccatGCAAAACATCGCCGGGCAGGTGCCCTCTGGATGTAAA
AGCCTCCATGCCCCTAATCTCACACACGTGCTCGGCACTCCCGGCCATCG
ATCAATCCCTGTGCAGGATGCTGGGCCTGGACGCGGCAGGAAAGACCACC
ATCCTCTACCGCCTCCagctgggcgaggacgtgcaCTCCATCCCCACGAT
CGGGTAGGTCAACATGGGCATTGGCCCCTGCTGCGTGAAAGCGAATAAAA
CTTGTGCAGTGTTTCTTTATGCTGCTTGTGGCTATCGGGACTACCTGTGG
CGTCAGGACTCGACCGAAGTGCAGCGGTGTATGACGCGATTCTCACACTT
CCGTGCCCTGCCCCCTCACCCCCGACCTCCGTGCTTCTTCCCACCacccc
atgcctccctcgcccgacTTCTCGGGTCCGGCAGGTTCAACGTGGAGACG
GTCAACTACAAGAATATCTGCTTCACTATCTGGGACGTGGGGGGTCAAGA
CCGCTTGCGAAAGTAGGAAGAaacgaggggaaggtggagggggggtaGGA
GAATGCATGGCGACACTGAAATTCTGAGGCACATgcactctctccctttt
aCCCACGTGCACTCTCCCCCTTTTACCCAGGCTCTGGCGGCACTACTACA
AGGACAATGACGCCCTTATCTTCGTCATCGATTCTGCCGACCGCGACGTA
CGTGCCTGTTCGCTTTGCAGtcattcctctttcccttccctcccccctct
tccttccctccctttgcggATAACTGCCTTTCTAGCTGCTTCCTCACCTc
tcacccctccccttcttttctcccacTCGCCCCCCTTGCCATCCAGCGCT
TCGATGAGGCCAAAACAgagcttctctccctcctctccgagcACCAACTC
TCTCACAGCACCATCCTTGTCTTCGCCAACAAGGCCGACCTGCCCACGGC
CATTCCCGTCGTCGAGATCGCTCAGCTTCTCCAGCTTGACAGGGTAcgtg
gtcctcctccttcccatcccccccccttcctccctccctccctcccctcc
ccctcctaccttcctcccgcgcccgctCGTTCCACCAACCCTttattctc
cttccctctgtctcccctcttccgacccttccctccccctcctcccaccc
gcctcctccctcaggccgCCAAAGGACGGCATTGGTACATCCAACCCTCG
TGTGCGACGACGGGGGacgggctggtggagggcctggaCTGGCTATCATG
CAAGCTGAAGGAAGCGGGTCCTCGCCCGCCGAGCTCCGCCTGA back to topCoding sequence (CDS) from alignment at CM002466.1:1003436..1004928+ >rna5857 ID=rna5857|Name=rna5857|organism=Nannochloropsis gaditana|type=CDS|length=3474bp|location=Sequence derived from alignment at CM002466.1:1003436..1004928+ (Nannochloropsis gaditana)
ATGGGAGGCTTGTTGTCGCGGGTCCTGGACACGCTGTCcgcgctgggagg
gaagcaggaaaagcgAATTCTGATGCTGGGCCTGGACGCGGCAGGAAAGA
CCACCATCCTCTACCGCCTCCagctgggcgaggacgtgcaCTCCATCCCC
ACGATCGGGTTCAACGTGGAGACGGTCAACTACAAGAATATCTGCTTCAC
TATCTGGGACGTGGGGGGTCAAGACCGCTTGCGAAAGCTCTGGCGGCACT
ACTACAAGGACAATGACGCCCTTATCTTCGTCATCGATTCTGCCGACCGC
GACCGCTTCGATGAGGCCAAAACAgagcttctctccctcctctccgagcA
CCAACTCTCTCACAGCACCATCCTTGTCTTCGCCAACAAGGCCGACCTGC
CCACGGCCATTCCCGTCGTCGAGATCGCTCAGCTTCTCCAGCTTGACAGG
gccgCCAAAGGACGGCATTGGTACATCCAACCCTCGTGTGCGACGACGGG
GGacgggctggtggagggcctggaCTGGCTATCATGCAAGCTGAAGGAAG
CGGGTCCTCGCCCGCCGAGCTCCGCCTGAATGGGAGGCTTGTTGTCGCGG
GTCCTGGACACGCTGTCcgcgctgggagggaagcaggaaaagcgAATTCT
GATGCTGGGCCTGGACGCGGCAGGAAAGACCACCATCCTCTACCGCCTCC
agctgggcgaggacgtgcaCTCCATCCCCACGATCGGGTTCAACGTGGAG
ACGGTCAACTACAAGAATATCTGCTTCACTATCTGGGACGTGGGGGGTCA
AGACCGCTTGCGAAAGCTCTGGCGGCACTACTACAAGGACAATGACGCCC
TTATCTTCGTCATCGATTCTGCCGACCGCGACCGCTTCGATGAGGCCAAA
ACAgagcttctctccctcctctccgagcACCAACTCTCTCACAGCACCAT
CCTTGTCTTCGCCAACAAGGCCGACCTGCCCACGGCCATTCCCGTCGTCG
AGATCGCTCAGCTTCTCCAGCTTGACAGGgccgCCAAAGGACGGCATTGG
TACATCCAACCCTCGTGTGCGACGACGGGGGacgggctggtggagggcct
ggaCTGGCTATCATGCAAGCTGAAGGAAGCGGGTCCTCGCCCGCCGAGCT
CCGCCTGAATGGGAGGCTTGTTGTCGCGGGTCCTGGACACGCTGTCcgcg
ctgggagggaagcaggaaaagcgAATTCTGATGCTGGGCCTGGACGCGGC
AGGAAAGACCACCATCCTCTACCGCCTCCagctgggcgaggacgtgcaCT
CCATCCCCACGATCGGGTTCAACGTGGAGACGGTCAACTACAAGAATATC
TGCTTCACTATCTGGGACGTGGGGGGTCAAGACCGCTTGCGAAAGCTCTG
GCGGCACTACTACAAGGACAATGACGCCCTTATCTTCGTCATCGATTCTG
CCGACCGCGACCGCTTCGATGAGGCCAAAACAgagcttctctccctcctc
tccgagcACCAACTCTCTCACAGCACCATCCTTGTCTTCGCCAACAAGGC
CGACCTGCCCACGGCCATTCCCGTCGTCGAGATCGCTCAGCTTCTCCAGC
TTGACAGGgccgCCAAAGGACGGCATTGGTACATCCAACCCTCGTGTGCG
ACGACGGGGGacgggctggtggagggcctggaCTGGCTATCATGCAAGCT
GAAGGAAGCGGGTCCTCGCCCGCCGAGCTCCGCCTGAATGGGAGGCTTGT
TGTCGCGGGTCCTGGACACGCTGTCcgcgctgggagggaagcaggaaaag
cgAATTCTGATGCTGGGCCTGGACGCGGCAGGAAAGACCACCATCCTCTA
CCGCCTCCagctgggcgaggacgtgcaCTCCATCCCCACGATCGGGTTCA
ACGTGGAGACGGTCAACTACAAGAATATCTGCTTCACTATCTGGGACGTG
GGGGGTCAAGACCGCTTGCGAAAGCTCTGGCGGCACTACTACAAGGACAA
TGACGCCCTTATCTTCGTCATCGATTCTGCCGACCGCGACCGCTTCGATG
AGGCCAAAACAgagcttctctccctcctctccgagcACCAACTCTCTCAC
AGCACCATCCTTGTCTTCGCCAACAAGGCCGACCTGCCCACGGCCATTCC
CGTCGTCGAGATCGCTCAGCTTCTCCAGCTTGACAGGgccgCCAAAGGAC
GGCATTGGTACATCCAACCCTCGTGTGCGACGACGGGGGacgggctggtg
gagggcctggaCTGGCTATCATGCAAGCTGAAGGAAGCGGGTCCTCGCCC
GCCGAGCTCCGCCTGAATGGGAGGCTTGTTGTCGCGGGTCCTGGACACGC
TGTCcgcgctgggagggaagcaggaaaagcgAATTCTGATGCTGGGCCTG
GACGCGGCAGGAAAGACCACCATCCTCTACCGCCTCCagctgggcgagga
cgtgcaCTCCATCCCCACGATCGGGTTCAACGTGGAGACGGTCAACTACA
AGAATATCTGCTTCACTATCTGGGACGTGGGGGGTCAAGACCGCTTGCGA
AAGCTCTGGCGGCACTACTACAAGGACAATGACGCCCTTATCTTCGTCAT
CGATTCTGCCGACCGCGACCGCTTCGATGAGGCCAAAACAgagcttctct
ccctcctctccgagcACCAACTCTCTCACAGCACCATCCTTGTCTTCGCC
AACAAGGCCGACCTGCCCACGGCCATTCCCGTCGTCGAGATCGCTCAGCT
TCTCCAGCTTGACAGGgccgCCAAAGGACGGCATTGGTACATCCAACCCT
CGTGTGCGACGACGGGGGacgggctggtggagggcctggaCTGGCTATCA
TGCAAGCTGAAGGAAGCGGGTCCTCGCCCGCCGAGCTCCGCCTGAATGGG
AGGCTTGTTGTCGCGGGTCCTGGACACGCTGTCcgcgctgggagggaagc
aggaaaagcgAATTCTGATGCTGGGCCTGGACGCGGCAGGAAAGACCACC
ATCCTCTACCGCCTCCagctgggcgaggacgtgcaCTCCATCCCCACGAT
CGGGTTCAACGTGGAGACGGTCAACTACAAGAATATCTGCTTCACTATCT
GGGACGTGGGGGGTCAAGACCGCTTGCGAAAGCTCTGGCGGCACTACTAC
AAGGACAATGACGCCCTTATCTTCGTCATCGATTCTGCCGACCGCGACCG
CTTCGATGAGGCCAAAACAgagcttctctccctcctctccgagcACCAAC
TCTCTCACAGCACCATCCTTGTCTTCGCCAACAAGGCCGACCTGCCCACG
GCCATTCCCGTCGTCGAGATCGCTCAGCTTCTCCAGCTTGACAGGgccgC
CAAAGGACGGCATTGGTACATCCAACCCTCGTGTGCGACGACGGGGGacg
ggctggtggagggcctggaCTGGCTATCATGCAAGCTGAAGGAAGCGGGT
CCTCGCCCGCCGAGCTCCGCCTGA back to top
|