EWM24834.1, cds5842 (CDS) Nannochloropsis gaditana

Overview
NameEWM24834.1
Unique Namecds5842
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:1003436..1003506 +
Alignment locationCM002466.1:1003752..1003838 +
Alignment locationCM002466.1:1004070..1004147 +
Alignment locationCM002466.1:1004266..1004332 +
Alignment locationCM002466.1:1004482..1004628 +
Alignment locationCM002466.1:1004800..1004928 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24834.1
Productadp-ribosylation factor 1
Orig transcript idgnl|cribi|Naga_100234g4.1038.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:1003436..1003506 +
CM002466.1supercontigCM002466.1:1003752..1003838 +
CM002466.1supercontigCM002466.1:1004070..1004147 +
CM002466.1supercontigCM002466.1:1004266..1004332 +
CM002466.1supercontigCM002466.1:1004482..1004628 +
CM002466.1supercontigCM002466.1:1004800..1004928 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005886plasma membrane
GO:0005737cytoplasm
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0007165signal transduction
GO:0015031protein transport
GO:0006886intracellular protein transport
GO:0007264small GTPase mediated signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
IPR003579Small_GTPase_Rab_type
IPR006687Small_GTPase_SAR1
IPR024156Small_GTPase_ARF
IPR006689Small_GTPase_ARF/SAR
Homology
BLAST of EWM24834.1 vs. NCBI_GenBank
Match: gi|585106430|gb|EWM24834.1| (adp-ribosylation factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 394.815 bits (1013), Expect = 3.828e-139
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0
Query:    1 MGGLLSRVLDTLSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVETVNYKNICFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRDRFDEAKTELLSLLSEHQLSHSTILVFANKADLPTAIPVVEIAQLLQLDRAAKGRHWYIQPSCATTGDGLVEGLDWLSCKLKEAGPRPPSSA 192
            MGGLLSRVLDTLSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVETVNYKNICFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRDRFDEAKTELLSLLSEHQLSHSTILVFANKADLPTAIPVVEIAQLLQLDRAAKGRHWYIQPSCATTGDGLVEGLDWLSCKLKEAGPRPPSSA
Sbjct:    1 MGGLLSRVLDTLSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVETVNYKNICFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRDRFDEAKTELLSLLSEHQLSHSTILVFANKADLPTAIPVVEIAQLLQLDRAAKGRHWYIQPSCATTGDGLVEGLDWLSCKLKEAGPRPPSSA 192          
BLAST of EWM24834.1 vs. NCBI_GenBank
Match: gi|585106427|gb|EWM24831.1| (adp-ribosylation factor [Nannochloropsis gaditana])

HSP 1 Score: 288.886 bits (738), Expect = 6.865e-97
Identity = 145/185 (78.38%), Postives = 158/185 (85.41%), Query Frame = 0
Query:    1 MGGLLSRVLDTLSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVETVNYKNICFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRDRFDEAKTELLSLLSEHQLSHSTILVFANKADLPTAIPVVEIAQLLQLDRAAKGRHWYIQPSCATTGDGLVEGLDWLSCKLKEAG 185
            MG L++RVLD L    GK+++R+LMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVE V Y+NI FTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADR R  EA++EL  LLSE QL  S +LV+ANKADLP AI V E+A+LLQLD  AKGR WYIQPSCA TGDGLVEGLDWLS KLKE G
Sbjct:    1 MGQLMTRVLDVLW---GKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVAKGRPWYIQPSCAMTGDGLVEGLDWLSEKLKEVG 182          
BLAST of EWM24834.1 vs. NCBI_GenBank
Match: gi|157093559|gb|ABV22434.1| (ADP-ribosylation factor 1 [Oxyrrhis marina])

HSP 1 Score: 232.646 bits (592), Expect = 3.232e-75
Identity = 112/181 (61.88%), Postives = 137/181 (75.69%), Query Frame = 0
Query:    1 MGGLLSRVLDTLSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVETVNYKNICFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRDRFDEAKTELLSLLSEHQLSHSTILVFANKADLPTAIPVVEIAQLLQLDRAAKGRHWYIQPSCATTGDGLVEGLDWLSCKL 181
            MG   SR+    S L  KQE RILM+GLDAAGKTTILY+L+LGE V +IPTIGFNVETV YKNI FT+WDVGGQD++R LWRHYY++   LIFV+DS DR+R D+A+ EL  +LSE ++  + +LVFANK DLP A+P  E+ + L+L  +   R WYIQ +CATTGDGL EGLDWLS  L
Sbjct:    1 MGLAFSRLF---SRLFSKQEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRALWRHYYQNTQGLIFVVDSNDRERVDDAREELHKILSEDEMKDAVLLVFANKQDLPQAMPAAEVTEKLKLT-SMSNRQWYIQSTCATTGDGLYEGLDWLSRTL 177          
BLAST of EWM24834.1 vs. NCBI_GenBank
Match: gi|1168929878|ref|XP_020508130.1| (ADP-ribosylation factor 1-like [Labrus bergylta])

HSP 1 Score: 232.261 bits (591), Expect = 5.904e-75
Identity = 110/174 (63.22%), Postives = 137/174 (78.74%), Query Frame = 0
Query:   11 TLSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVETVNYKNICFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRDRFDEAKTELLSLLSEHQLSHSTILVFANKADLPTAIPVVEIAQLLQLDRAAKGRHWYIQPSCATTGDGLVEGLDWLSCKLKEA 184
             LS L GK+E RILM+GLDAAGKTTILY+L+LGE V +IPTIGFNVETV+YKNI FT+WDVGGQD++R LWRHY+++   LIFV+DS DR+R  EAK EL+ +L+E +L    +LVFANK DLP A+   EI   LQL ++ +GR WYIQ +CAT+GDGL EGL+WLS +LK  
Sbjct:    8 VLSRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVDYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAKDELMRMLAEDELRDCVVLVFANKQDLPNAMNAAEITDKLQL-QSLRGRSWYIQATCATSGDGLYEGLEWLSNELKNV 180          
BLAST of EWM24834.1 vs. NCBI_GenBank
Match: gi|209882857|ref|XP_002142864.1| (ADP ribosylation factor [Cryptosporidium muris RN66] >gi|209558470|gb|EEA08515.1| ADP ribosylation factor, putative [Cryptosporidium muris RN66] >gi|1098425341|gb|OII73476.1| ADP ribosylation factor [Cryptosporidium andersoni])

HSP 1 Score: 230.72 bits (587), Expect = 1.947e-74
Identity = 111/183 (60.66%), Postives = 143/183 (78.14%), Query Frame = 0
Query:    1 MGGLLSRVLDTLSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVETVNYKNICFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRDRFDEAKTELLSLLSEHQLSHSTILVFANKADLPTAIPVVEIAQLLQLDRAAKGRHWYIQPSCATTGDGLVEGLDWLSCKLKE 183
            MG  LSR+ + L    GK+E RILM+GLDAAGKTTILY+L+LGE V +IPTIGFNVETV YKNI FT+WDVGGQD++R LWRHYY + D LIFV+DS DRDR ++++ EL+ +LSE +L  + ++V ANK DLP A+ V E+ + LQL  + + R+WYIQ +CATTGDGL EGLDWL+  L++
Sbjct:    1 MGLALSRIWNRLF---GKREMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYTNTDGLIFVVDSNDRDRINDSRDELMRMLSEDELRDACLVVLANKQDLPNAMSVTEVTEKLQLS-SIRHRNWYIQSTCATTGDGLYEGLDWLARNLEK 179          
BLAST of EWM24834.1 vs. NCBI_GenBank
Match: gi|443710208|gb|ELU04506.1| (hypothetical protein CAPTEDRAFT_151740 [Capitella teleta])

HSP 1 Score: 230.72 bits (587), Expect = 2.011e-74
Identity = 110/182 (60.44%), Postives = 138/182 (75.82%), Query Frame = 0
Query:    1 MGGLLSRVLDTLSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVETVNYKNICFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRDRFDEAKTELLSLLSEHQLSHSTILVFANKADLPTAIPVVEIAQLLQLDRAAKGRHWYIQPSCATTGDGLVEGLDWLSCKLK 182
            MG +  R+      L GK+E RILM+GLDAAGKTTILY+L+LGE V +IPTIGFNVETV YKNI FT+WDVGGQD++R LWRHY+++   LIFV+DS DR+R  EA+ EL+ +L+E +L  + +LVFANK DLP A+   EI   L L  + + RHWYIQ +CAT+GDGL EGLDWLS +LK
Sbjct:    1 MGNMFERIF---KGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIAEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL-HSLRHRHWYIQATCATSGDGLYEGLDWLSNQLK 178          
BLAST of EWM24834.1 vs. NCBI_GenBank
Match: gi|498929250|ref|XP_004518598.1| (ADP-ribosylation factor 2 [Ceratitis capitata] >gi|751437250|ref|XP_011184949.1| PREDICTED: ADP-ribosylation factor 2 [Zeugodacus cucurbitae] >gi|751437252|ref|XP_011185750.1| PREDICTED: ADP-ribosylation factor 2 [Zeugodacus cucurbitae] >gi|751790982|ref|XP_011205067.1| PREDICTED: ADP-ribosylation factor 2 [Bactrocera dorsalis] >gi|929367270|ref|XP_014093371.1| PREDICTED: ADP-ribosylation factor 2 [Bactrocera oleae] >gi|1048035448|ref|XP_017491838.1| PREDICTED: ADP-ribosylation factor 2 [Rhagoletis zephyria] >gi|1098678073|ref|XP_018798872.1| PREDICTED: ADP-ribosylation factor 2 [Bactrocera latifrons] >gi|1184336024|ref|XP_020716326.1| ADP-ribosylation factor 2 [Ceratitis capitata])

HSP 1 Score: 230.72 bits (587), Expect = 2.395e-74
Identity = 106/170 (62.35%), Postives = 136/170 (80.00%), Query Frame = 0
Query:   12 LSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVETVNYKNICFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRDRFDEAKTELLSLLSEHQLSHSTILVFANKADLPTAIPVVEIAQLLQLDRAAKGRHWYIQPSCATTGDGLVEGLDWLSCKL 181
            L+ L GK++ RILM+GLDAAGKTTILY+L+LGE V +IPTIGFNVETV YKNICFT+WDVGGQD++R LWRHY+++   LIFV+DS DRDR +EA+ EL ++L E +L  + +LVFANK DLP A+   E+   L+L++  + RHWYIQ +CAT G+GL EGLDWLS +L
Sbjct:    9 LTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRINEAEKELQNMLQEDELRDAVLLVFANKQDLPNAMSAAELTDKLRLNQ-LRNRHWYIQAACATQGNGLYEGLDWLSAEL 177          
BLAST of EWM24834.1 vs. NCBI_GenBank
Match: gi|1209684977|gb|OWR41595.1| (ADP-ribosylation factor [Danaus plexippus plexippus])

HSP 1 Score: 230.335 bits (586), Expect = 2.794e-74
Identity = 109/184 (59.24%), Postives = 139/184 (75.54%), Query Frame = 0
Query:    1 MGGLLSRVLDTLSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVETVNYKNICFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRDRFDEAKTELLSLLSEHQLSHSTILVFANKADLPTAIPVVEIAQLLQLDRAAKGRHWYIQPSCATTGDGLVEGLDWLSCKLKEA 184
            MG + + +      L GK+E RILM+GLDAAGKTTILY+L+LGE V +IPTIGFNVETV YKNI FT+WDVGGQD++R LWRHY+++   LIFV+DS DR+R  EA+ EL+ +LSE +L  + +L+FANK DLP A+   EI   L L  + + R+WYIQ +CAT+GDGL EGLDWLS +LK A
Sbjct:    1 MGNMFANLF---KGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEITDKLSL-HSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKNA 180          
BLAST of EWM24834.1 vs. NCBI_GenBank
Match: gi|1132468020|gb|OLY83737.1| (ADP-ribosylation factor [Smittium mucronatum])

HSP 1 Score: 230.335 bits (586), Expect = 2.823e-74
Identity = 111/171 (64.91%), Postives = 134/171 (78.36%), Query Frame = 0
Query:   12 LSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVETVNYKNICFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRDRFDEAKTELLSLLSEHQLSHSTILVFANKADLPTAIPVVEIAQLLQLDRAAKGRHWYIQPSCATTGDGLVEGLDWLSCKLK 182
            LS L GK+E RILM+GLDAAGKTTILY+L+LGE V +IPTIGFNVETV YKNI FT+WDVGGQD++R LWRHYY++   +IFV+DS DR+R +EA+ EL  LL+E +L  S +LVFANK DLP A+   EI   L L R+ + R WYIQ +CAT+GDGL EGLDWLS  LK
Sbjct:    9 LSGLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNINFTVWDVGGQDKIRPLWRHYYQNTQGVIFVVDSNDRERVNEARDELTRLLNEDELRDSILLVFANKQDLPNAMDSAEITDKLGL-RSMRNRIWYIQSACATSGDGLYEGLDWLSTNLK 178          
BLAST of EWM24834.1 vs. NCBI_GenBank
Match: gi|156387456|ref|XP_001634219.1| (predicted protein [Nematostella vectensis] >gi|156221300|gb|EDO42156.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 230.335 bits (586), Expect = 2.982e-74
Identity = 110/184 (59.78%), Postives = 140/184 (76.09%), Query Frame = 0
Query:    1 MGGLLSRVLDTLSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVETVNYKNICFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRDRFDEAKTELLSLLSEHQLSHSTILVFANKADLPTAIPVVEIAQLLQLDRAAKGRHWYIQPSCATTGDGLVEGLDWLSCKLKEA 184
            MGG+ +++    + L GK+E RILM+GLDAAGKTTILY+L+LGE V +IPTIGFNVETV YKNI FT+WDVGGQD++R LWRHY+++   LIFV+DS DR+R  EA+ EL  +L+E +L  + +LVFANK DLP A+   EI   L L  + + R WYIQ +CAT+GDGL EGLDWLS +LK A
Sbjct:    1 MGGMFAKLF---AGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELNRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL-HSLRNRQWYIQATCATSGDGLYEGLDWLSSQLKNA 180          
The following BLAST results are available for this feature:
BLAST of EWM24834.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106430|gb|EWM24834.1|3.828e-139100.00adp-ribosylation factor 1 [Nannochloropsis gaditan... [more]
gi|585106427|gb|EWM24831.1|6.865e-9778.38adp-ribosylation factor [Nannochloropsis gaditana][more]
gi|157093559|gb|ABV22434.1|3.232e-7561.88ADP-ribosylation factor 1 [Oxyrrhis marina][more]
gi|1168929878|ref|XP_020508130.1|5.904e-7563.22ADP-ribosylation factor 1-like [Labrus bergylta][more]
gi|209882857|ref|XP_002142864.1|1.947e-7460.66ADP ribosylation factor [Cryptosporidium muris RN6... [more]
gi|443710208|gb|ELU04506.1|2.011e-7460.44hypothetical protein CAPTEDRAFT_151740 [Capitella ... [more]
gi|498929250|ref|XP_004518598.1|2.395e-7462.35ADP-ribosylation factor 2 [Ceratitis capitata] >gi... [more]
gi|1209684977|gb|OWR41595.1|2.794e-7459.24ADP-ribosylation factor [Danaus plexippus plexippu... [more]
gi|1132468020|gb|OLY83737.1|2.823e-7464.91ADP-ribosylation factor [Smittium mucronatum][more]
gi|156387456|ref|XP_001634219.1|2.982e-7459.78predicted protein [Nematostella vectensis] >gi|156... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5857rna5857Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications