rna5853, rna5853 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5853
Unique Name	rna5853
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1115
Alignment location	CM002466.1:995544..997434 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100234g1.1029.mrna
Orig protein id	gnl\|cribi\|Naga_100234g1.1029
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:995544..997434 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100234g1	gene5650	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5853	rna5853-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24825.1	cds5838	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:995544..997434+
coding sequence from alignment at CM002466.1:995544..997434+

mRNA sequence

>rna5853 ID=rna5853|Name=rna5853|organism=Nannochloropsis gaditana|type=mRNA|length=1115bp
GTTGCCAACCTTTCCATGCTAATCGACACTAAAAGAGGGTGAAATGTGTC
AATTGTCACAGGTCCTCCATGCACGGAATGACTGTCGTGCAATGAATTTG
GTAAGAGAGGTTCATAAGCGCGTATGGCAGAGGCGGAGGACTGCGGCGTT
CACAGGTGATGAATCCCATCTGATGCTGTCACGGCGCCAGTCACACCGGC
AAAGCCGCGTAAATATGTCAAGAAATTGTCTCATAGGCGTCGGTGGGCTT
CTCTTTGTCCATTGGACGTCGCTCTCCATGTCCCTCTCCTCATTGCCCGG
GGACCGTTATCCCTCGATACAAACCTCGACTGCCTTCTTTCCTCGTCGAT
ACGCCTCTACCGGCTTTCTTTACTCTATCCGGCCCCATCAACCACCGTTA
TTGTTGGGTCGTTCACAGCATTGCCGCCCCCGCGCCCAGACTCGGCGGGA
CGATGGAAGCTCTTACCCCTTTTTAAGCCGCTGGCGTCGCGGGCCCGATT
GGAGCGTGAGACTGGCGTCGACTGACGGAGTGCAGGGAACGGGGGAGACG
GACTTTTATTTCTCGTACCCTGCCTCAGGGGGGGAAAGAAAGGAGGAGGG
AGGTGGGGAAGGAGGGAAGGAGGGGCCGGGGGAGGGAGCGAAGGTGCCAG
ACGAGAACGCGCGGGCCCGGCAGAGATCAGATTCGAACGTCGTCCATCGG
CAGAATGAGGCGGAGGAGGAGGACCTGGCGGAGATAGTGGGAAAGGCGGG
GGAGTCGGTGCGGGAGGAGGCGCGGAGGCCGGGGGGGAGCCCGAGGGCGG
GAGGGAAGGAGGGGAGGAAGGCCGCGAGGGAGGGCGGGCCGCAGGGAGGG
CTTGGCGAGATTGAGGAGTCGAAGAGCCCTCCGGTGACGGTAGTTCCCGG
CCCCGCTCGCGCCCCTGAGGATGATTTAGCCAGACTAGGAGCAGGACAAG
AGGGAAGGAGTGCGACGAGGAGGGCGACAAAGCGCTGGGAGCTGGAGAGG
GGGGGATGAGACGGGGGGGGATGAGGAGGAGCCCCTGATCAACAGGGTGG
TGGGGGGCATGCTGAACGGCCTGGACTTGTCTGCCGGGGCCTACACGCTC
TCGACGCCCGGGGAG

protein sequence of rna5853

>rna5853-protein ID=rna5853-protein|Name=rna5853|organism=Nannochloropsis gaditana|type=polypeptide|length=303bp
MREVAVQIETLPPPMQEKSYKLMNRTVVNLQDKLGFILASGVSWETILRL
IQAELRAFREEGIDPLSESVARELFFVAASKVFPDLPLDEWNRNVESLSD
RTRKLWWESQMKMDDLLPPSSSYPSSTLEGPPSLPSAMRLRSPSSLYSSY
SSSNRTLAAAATGNDLKRWLESLEAALILAGVGIVDDSGKTPTAALREVG
ENLERLKQQSEDLLLLIEDEIRYIAKGGKPETSIKHLGESVKRYASEYTR
LVPEEWRKSLNLPPASPLPPPPYKKREEIVHEIIEIDEEELEAMVGDEEG
DWF

mRNA from alignment at CM002466.1:995544..997434+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5853 ID=rna5853|Name=rna5853|organism=Nannochloropsis gaditana|type=mRNA|length=1891bp|location=Sequence derived from alignment at CM002466.1:995544..997434+ (Nannochloropsis gaditana)
ATGAGAGAGGTGGCGGTGCAGATCGAAACGCTGCCCCCTCCGATGCAGGA
AAAGAGCTACAAGCTCATGAACAGGACTGTGGTCAACCTGCAAGACAAGg
tgtgccctccctccctccctgcctctctccctcccttcctccctcccttc
ttcctgctgccccctccttcgatcccgttctctttctcgctttttccccc
tgtttTTCTCCGGTCTGACTGGGAGGGATTCCAACATGCCCCTTTACCTC
ACTCCCTCATcgtctcgtttcctcccttccccaccgtctcctccgtcgac
ccactctcttcccctcatcGCCAGCTGGGCTTTATCTTGGCATCGGGTGT
GTCGTGGGAAACGATCTTAAGGTTGATTCAAGCCGAGCTCCGAGCGTTCC
GAGAGGAGGGTATCGACCCTTTGTCCGAGTCTGTGGCGCGGGAATTGTTT
TTTGTGGCCGCCAgcaaggtggggatggggggcagggggaaggaagggag
ggagggcgggaggaagggagggggggaggggagttgCTGGATGAATTTGG
GGAGAGAAAGGTCTTGCTCGAAGGGTGTAGACGATGAAGGGGATCAGGAT
GACGTTGCCACCCTTTCTCTTGTTCGGGAAAGTGTACTGATGACATCATT
GTTGTGAGGAGATCCGATCCGCCCACCATTGGGAGCAcccgccctcgtcc
aacatcccccatttctccctccctctcccgcgtcctccctcccttcctcc
ctcctgcaggTCTTCCCTGACCTGCCCCTGGATGAATGGAACCGAAACGT
CGAGTCCCTGAGCGACCGCACCCGCAAACTTTGGTGGGAGAGTCAAATGA
AggcaagggtggggaggggggaaacgagggggggggaactcGGTGCGAAT
GCATGCTCGTACAACGCGTGTGTTTCCACCTCATTCTCTTTGCCCCTTCG
ATTTTCTCGTTATTAATCAACGACAGATGGACGACTTGTTGccgccgtcc
tcttcctacccctcctccactctcgAGggcccaccctctctcccgtccgC
CATGCGTCTCAggtccccgtcttccctctaCTCCTCCTACTCCTCCTCAA
ACCGCACccttgccgctgctgccacaGGCAATGACCTGAAAAGATGGTTG
GAGAGTCTGGAGGCAGCCTTGATTCTTGGTATGCAGtaagagggagacag
ggaggcaggggggaggggagggagggaaggaggtgaaatTGTGATCGGAT
TGCGGGCTTATCATAGCATACGACAACTGATGCCAATCCgttgctttttt
cccttttctttctatcCTGATCTCGTCTACGCCTCAGCCGGGGTGGGCAT
TGTCGATGACAGCGGCAAAACTCCGACCGCCGCGCTGAGGGAAGTAGGGG
AAAATTTGGAGCGATTGAAACAGCAATCGGAGGACCTCCTTCTCTTGATT
GAGGACGAAATCCGTTACATCGCTAAGGGTGGCAAGCCGGAGGTATGATT
TGTTggccgggaggggtgggCTCATGTCATGGGACacgggagagggatgc
aGCTTACCGTTGCATACCTGTCGACTCCATCTTGCGAGTCATGACGGCAC
TGCTCTAGCTTTTGGTATCTCTATGTGCATTTCGCTAATATATACATCCT
TTCCTCGATTTTTTTATCTTAGACATCTATAAAGCACCTGGGGGAGAGCG
TCAAAAGGTACGCGAGCGAATACACGCGCCTCGTTCCCGAGGAGTGGAGA
AAATCACTCAaccttcctccagcttctccactacctcctcctccgtacaa
aaaaagggaggagatcgtGCATGAAATCATAGAAATAGATGAAGAGGAGT
TAGAGGCTATGGTaggcgatgaggagggagactggTTTTAG

Coding sequence (CDS) from alignment at CM002466.1:995544..997434+

>rna5853 ID=rna5853|Name=rna5853|organism=Nannochloropsis gaditana|type=CDS|length=5472bp|location=Sequence derived from alignment at CM002466.1:995544..997434+ (Nannochloropsis gaditana)
ATGAGAGAGGTGGCGGTGCAGATCGAAACGCTGCCCCCTCCGATGCAGGA
AAAGAGCTACAAGCTCATGAACAGGACTGTGGTCAACCTGCAAGACAAGC
TGGGCTTTATCTTGGCATCGGGTGTGTCGTGGGAAACGATCTTAAGGTTG
ATTCAAGCCGAGCTCCGAGCGTTCCGAGAGGAGGGTATCGACCCTTTGTC
CGAGTCTGTGGCGCGGGAATTGTTTTTTGTGGCCGCCAgcaaggTCTTCC
CTGACCTGCCCCTGGATGAATGGAACCGAAACGTCGAGTCCCTGAGCGAC
CGCACCCGCAAACTTTGGTGGGAGAGTCAAATGAAgATGGACGACTTGTT
GccgccgtcctcttcctacccctcctccactctcgAGggcccaccctctc
tcccgtccgCCATGCGTCTCAggtccccgtcttccctctaCTCCTCCTAC
TCCTCCTCAAACCGCACccttgccgctgctgccacaGGCAATGACCTGAA
AAGATGGTTGGAGAGTCTGGAGGCAGCCTTGATTCTTGCCGGGGTGGGCA
TTGTCGATGACAGCGGCAAAACTCCGACCGCCGCGCTGAGGGAAGTAGGG
GAAAATTTGGAGCGATTGAAACAGCAATCGGAGGACCTCCTTCTCTTGAT
TGAGGACGAAATCCGTTACATCGCTAAGGGTGGCAAGCCGGAGACATCTA
TAAAGCACCTGGGGGAGAGCGTCAAAAGGTACGCGAGCGAATACACGCGC
CTCGTTCCCGAGGAGTGGAGAAAATCACTCAaccttcctccagcttctcc
actacctcctcctccgtacaaaaaaagggaggagatcgtGCATGAAATCA
TAGAAATAGATGAAGAGGAGTTAGAGGCTATGGTaggcgatgaggaggga
gactggTTTTAGATGAGAGAGGTGGCGGTGCAGATCGAAACGCTGCCCCC
TCCGATGCAGGAAAAGAGCTACAAGCTCATGAACAGGACTGTGGTCAACC
TGCAAGACAAGCTGGGCTTTATCTTGGCATCGGGTGTGTCGTGGGAAACG
ATCTTAAGGTTGATTCAAGCCGAGCTCCGAGCGTTCCGAGAGGAGGGTAT
CGACCCTTTGTCCGAGTCTGTGGCGCGGGAATTGTTTTTTGTGGCCGCCA
gcaaggTCTTCCCTGACCTGCCCCTGGATGAATGGAACCGAAACGTCGAG
TCCCTGAGCGACCGCACCCGCAAACTTTGGTGGGAGAGTCAAATGAAgAT
GGACGACTTGTTGccgccgtcctcttcctacccctcctccactctcgAGg
gcccaccctctctcccgtccgCCATGCGTCTCAggtccccgtcttccctc
taCTCCTCCTACTCCTCCTCAAACCGCACccttgccgctgctgccacaGG
CAATGACCTGAAAAGATGGTTGGAGAGTCTGGAGGCAGCCTTGATTCTTG
CCGGGGTGGGCATTGTCGATGACAGCGGCAAAACTCCGACCGCCGCGCTG
AGGGAAGTAGGGGAAAATTTGGAGCGATTGAAACAGCAATCGGAGGACCT
CCTTCTCTTGATTGAGGACGAAATCCGTTACATCGCTAAGGGTGGCAAGC
CGGAGACATCTATAAAGCACCTGGGGGAGAGCGTCAAAAGGTACGCGAGC
GAATACACGCGCCTCGTTCCCGAGGAGTGGAGAAAATCACTCAaccttcc
tccagcttctccactacctcctcctccgtacaaaaaaagggaggagatcg
tGCATGAAATCATAGAAATAGATGAAGAGGAGTTAGAGGCTATGGTaggc
gatgaggagggagactggTTTTAGATGAGAGAGGTGGCGGTGCAGATCGA
AACGCTGCCCCCTCCGATGCAGGAAAAGAGCTACAAGCTCATGAACAGGA
CTGTGGTCAACCTGCAAGACAAGCTGGGCTTTATCTTGGCATCGGGTGTG
TCGTGGGAAACGATCTTAAGGTTGATTCAAGCCGAGCTCCGAGCGTTCCG
AGAGGAGGGTATCGACCCTTTGTCCGAGTCTGTGGCGCGGGAATTGTTTT
TTGTGGCCGCCAgcaaggTCTTCCCTGACCTGCCCCTGGATGAATGGAAC
CGAAACGTCGAGTCCCTGAGCGACCGCACCCGCAAACTTTGGTGGGAGAG
TCAAATGAAgATGGACGACTTGTTGccgccgtcctcttcctacccctcct
ccactctcgAGggcccaccctctctcccgtccgCCATGCGTCTCAggtcc
ccgtcttccctctaCTCCTCCTACTCCTCCTCAAACCGCACccttgccgc
tgctgccacaGGCAATGACCTGAAAAGATGGTTGGAGAGTCTGGAGGCAG
CCTTGATTCTTGCCGGGGTGGGCATTGTCGATGACAGCGGCAAAACTCCG
ACCGCCGCGCTGAGGGAAGTAGGGGAAAATTTGGAGCGATTGAAACAGCA
ATCGGAGGACCTCCTTCTCTTGATTGAGGACGAAATCCGTTACATCGCTA
AGGGTGGCAAGCCGGAGACATCTATAAAGCACCTGGGGGAGAGCGTCAAA
AGGTACGCGAGCGAATACACGCGCCTCGTTCCCGAGGAGTGGAGAAAATC
ACTCAaccttcctccagcttctccactacctcctcctccgtacaaaaaaa
gggaggagatcgtGCATGAAATCATAGAAATAGATGAAGAGGAGTTAGAG
GCTATGGTaggcgatgaggagggagactggTTTTAGATGAGAGAGGTGGC
GGTGCAGATCGAAACGCTGCCCCCTCCGATGCAGGAAAAGAGCTACAAGC
TCATGAACAGGACTGTGGTCAACCTGCAAGACAAGCTGGGCTTTATCTTG
GCATCGGGTGTGTCGTGGGAAACGATCTTAAGGTTGATTCAAGCCGAGCT
CCGAGCGTTCCGAGAGGAGGGTATCGACCCTTTGTCCGAGTCTGTGGCGC
GGGAATTGTTTTTTGTGGCCGCCAgcaaggTCTTCCCTGACCTGCCCCTG
GATGAATGGAACCGAAACGTCGAGTCCCTGAGCGACCGCACCCGCAAACT
TTGGTGGGAGAGTCAAATGAAgATGGACGACTTGTTGccgccgtcctctt
cctacccctcctccactctcgAGggcccaccctctctcccgtccgCCATG
CGTCTCAggtccccgtcttccctctaCTCCTCCTACTCCTCCTCAAACCG
CACccttgccgctgctgccacaGGCAATGACCTGAAAAGATGGTTGGAGA
GTCTGGAGGCAGCCTTGATTCTTGCCGGGGTGGGCATTGTCGATGACAGC
GGCAAAACTCCGACCGCCGCGCTGAGGGAAGTAGGGGAAAATTTGGAGCG
ATTGAAACAGCAATCGGAGGACCTCCTTCTCTTGATTGAGGACGAAATCC
GTTACATCGCTAAGGGTGGCAAGCCGGAGACATCTATAAAGCACCTGGGG
GAGAGCGTCAAAAGGTACGCGAGCGAATACACGCGCCTCGTTCCCGAGGA
GTGGAGAAAATCACTCAaccttcctccagcttctccactacctcctcctc
cgtacaaaaaaagggaggagatcgtGCATGAAATCATAGAAATAGATGAA
GAGGAGTTAGAGGCTATGGTaggcgatgaggagggagactggTTTTAGAT
GAGAGAGGTGGCGGTGCAGATCGAAACGCTGCCCCCTCCGATGCAGGAAA
AGAGCTACAAGCTCATGAACAGGACTGTGGTCAACCTGCAAGACAAGCTG
GGCTTTATCTTGGCATCGGGTGTGTCGTGGGAAACGATCTTAAGGTTGAT
TCAAGCCGAGCTCCGAGCGTTCCGAGAGGAGGGTATCGACCCTTTGTCCG
AGTCTGTGGCGCGGGAATTGTTTTTTGTGGCCGCCAgcaaggTCTTCCCT
GACCTGCCCCTGGATGAATGGAACCGAAACGTCGAGTCCCTGAGCGACCG
CACCCGCAAACTTTGGTGGGAGAGTCAAATGAAgATGGACGACTTGTTGc
cgccgtcctcttcctacccctcctccactctcgAGggcccaccctctctc
ccgtccgCCATGCGTCTCAggtccccgtcttccctctaCTCCTCCTACTC
CTCCTCAAACCGCACccttgccgctgctgccacaGGCAATGACCTGAAAA
GATGGTTGGAGAGTCTGGAGGCAGCCTTGATTCTTGCCGGGGTGGGCATT
GTCGATGACAGCGGCAAAACTCCGACCGCCGCGCTGAGGGAAGTAGGGGA
AAATTTGGAGCGATTGAAACAGCAATCGGAGGACCTCCTTCTCTTGATTG
AGGACGAAATCCGTTACATCGCTAAGGGTGGCAAGCCGGAGACATCTATA
AAGCACCTGGGGGAGAGCGTCAAAAGGTACGCGAGCGAATACACGCGCCT
CGTTCCCGAGGAGTGGAGAAAATCACTCAaccttcctccagcttctccac
tacctcctcctccgtacaaaaaaagggaggagatcgtGCATGAAATCATA
GAAATAGATGAAGAGGAGTTAGAGGCTATGGTaggcgatgaggagggaga
ctggTTTTAGATGAGAGAGGTGGCGGTGCAGATCGAAACGCTGCCCCCTC
CGATGCAGGAAAAGAGCTACAAGCTCATGAACAGGACTGTGGTCAACCTG
CAAGACAAGCTGGGCTTTATCTTGGCATCGGGTGTGTCGTGGGAAACGAT
CTTAAGGTTGATTCAAGCCGAGCTCCGAGCGTTCCGAGAGGAGGGTATCG
ACCCTTTGTCCGAGTCTGTGGCGCGGGAATTGTTTTTTGTGGCCGCCAgc
aaggTCTTCCCTGACCTGCCCCTGGATGAATGGAACCGAAACGTCGAGTC
CCTGAGCGACCGCACCCGCAAACTTTGGTGGGAGAGTCAAATGAAgATGG
ACGACTTGTTGccgccgtcctcttcctacccctcctccactctcgAGggc
ccaccctctctcccgtccgCCATGCGTCTCAggtccccgtcttccctcta
CTCCTCCTACTCCTCCTCAAACCGCACccttgccgctgctgccacaGGCA
ATGACCTGAAAAGATGGTTGGAGAGTCTGGAGGCAGCCTTGATTCTTGCC
GGGGTGGGCATTGTCGATGACAGCGGCAAAACTCCGACCGCCGCGCTGAG
GGAAGTAGGGGAAAATTTGGAGCGATTGAAACAGCAATCGGAGGACCTCC
TTCTCTTGATTGAGGACGAAATCCGTTACATCGCTAAGGGTGGCAAGCCG
GAGACATCTATAAAGCACCTGGGGGAGAGCGTCAAAAGGTACGCGAGCGA
ATACACGCGCCTCGTTCCCGAGGAGTGGAGAAAATCACTCAaccttcctc
cagcttctccactacctcctcctccgtacaaaaaaagggaggagatcgtG
CATGAAATCATAGAAATAGATGAAGAGGAGTTAGAGGCTATGGTaggcga
tgaggagggagactggTTTTAG

Synonyms

Publications