rna5850, rna5850 (mRNA) Nannochloropsis gaditana

Overview
Namerna5850
Unique Namerna5850
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1084
Alignment locationCM002466.1:989989..991643 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100887g5.5889.mrna
Orig protein idgnl|cribi|Naga_100887g5.5889
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:989989..991643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100887g5gene5647Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5850rna5850-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24838.1cds5835Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5850 ID=rna5850|Name=rna5850|organism=Nannochloropsis gaditana|type=mRNA|length=1084bp
CCACCGTGTTTAAGGTCCCTACACCAGCGACACCAGATGTGATCCTCCAA
ACAGACGAATTTCAGTGTGCAAAGCGCCTGGACTCAACCATGTTGCAGAA
GCAGGATATAACAAACATTTACACGAAAGGAGATGGCACTAAAGAGGATT
AACAAGGAGCTCCAGGACCTAGGACGAGACCCGCCCGCTAATTGCTCAGC
AGGCCCCGTAGGCGATGACCTTTTCCATTGGCAAGCCACCATCATGGGGC
CAGACGACTCGCCCTACAGCGGAGCAGTTTTTTTCTTGAACATCCATTTT
CCTGCAGACTATCCTTTCAAGCCTCCCAAGGTGAATTTTACGACCCGCAT
CTACCACTGCAACATCAACGCCAACGGTGGCATTTGCCTCGACATCCTTA
AGGATCAGTGGAGCCCGGCGTTGACCGTCTCCAAGGTCCTCCTCTCCATT
TGCTCCTTGCTGACGGACCCAAACCCCGACGACCCCCTCGGTTCCCGAAA
TCGCCCAACTCTACCGCACTGACCGGGGGAGACACGACGCCACCGCGCGA
GAATGGACGGCCAAGTATGCCATGTAGTCGTTACTGAGCCCCCTCTTCTT
TGATGGAAGTGGAGAAGGAGGGGTGGTGTCGGGCGGCACTGTGAGGATTT
GAAGGGAAACACAAAGCGATGGAGGGGGAAGGAAAATTGGCACGGGAGTG
TCACGAGCTAGTGGAAAAAGCGAGGGAATGAGGAGCTAGGGAGGGAAAGG
GGCAAGCCTGCAGTGTACATATGACCCTCCAAAAGCGGGCGTTGAAGAGA
TGAGAGCCAAGGGGGGGAGGAATCAGCGGATCGGAACGGTTGGACACAGA
GGTTCGGGAGCGCTGGCGGTGGGATGGCTGGTGACAAGGAAGGAGAGGGT
GAGCGTGCTTCTTTTTCGCCTCGGGCGACTCGCGTGTCTCCCTCTGGCTC
GCTAGACGTTTTTTGTTTTGCTGCCAGCCACCCTTGCACCTCCTGTCCTT
CTCTCCTCTTCCCATCCGAATGGAAAAAGGATGGCACTTGAAGGGATCTT
TAAGAAAGAAAAAAGCGGAGCTCGGTAGTAATTG
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protein sequence of rna5850

>rna5850-protein ID=rna5850-protein|Name=rna5850|organism=Nannochloropsis gaditana|type=polypeptide|length=138bp
EVGGGGEDTEVQRLPFPVSLFLLLMLPSQVRSINIKENLATDGRSIEEKQ
AAVRAELQAKTDAAARQEAIAHFRAILLETTQTETEKMQESVSWAKFGEN
SLKDFKWSLIQEAIAAAEGIDFSEVPSFLLRENPVVWT
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mRNA from alignment at CM002466.1:989989..991643-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5850 ID=rna5850|Name=rna5850|organism=Nannochloropsis gaditana|type=mRNA|length=1655bp|location=Sequence derived from alignment at CM002466.1:989989..991643- (Nannochloropsis gaditana)
GAAGTAGGTGGGGGGGGGGAAGACACAGAGGTGCAGCGACTGCCCTTTCC
GGTCTCTTTATTTTTGCTTCTAATGCTTCCATCACAGGTGCGCAGCATTA
ATATAAAGGAAAATCTCGCGACAGACGGGCGGTCGATCGAGGAAAAACAA
GCCGCTGTCCGGGCGGAGCTTCAGGCGAAGGTGAGAAGGGGGGAAGAAAC
GGAGGGGGGAAAGGAGGAAAAACGGAGAAGAAGCAGGCCCATGCCAGGGG
GACGGGGCCTTTGTGTCGATTCACGCTCTTGGGCGGGCCCAGAAAGCACG
AGACACCGCGTTGGCCCTGAGGCTTGCTCACGGCTTGCGCCGCTCCTTCC
CTCCCACACAGACGGATGCGGCGGCCCGCCAAGAGGCCATCGCCCATTTT
CGCGCCATTTTGTTGGAAACGACCCAGACAGAGACGGAGAAAATGCAGGA
GTCTGTGAGCTGGGCTAAATTTGGGGAGAACAGTCTGAAGGTAGGGAAGA
AGGGTTGGAGGGAGGGAGGGAGAGGGAGGGAGGGGTGTGTGTGCGGGGTA
TGAGAAGCAGTAACAAGGGTCTTGTCCCACGGGAGATGCATTCTTTCCTG
CGCTCGTGGAAGCTCATCCGTCGATCGAGGCTGCTCACGGCCGTCCGCCC
TAGATTCTCCCCCTCGTCCACCGTGCTGCCTGTGTCGGTCATGGCGCTGT
CGGATCCAGATCCTGGCGGATGGTGCTTGTGCCGCGCTCCTCCTTATCTT
CTCCTCTCTCCCCCCTTAACCTTGCCCCCCCCCATGCTTTCTCCCTGGCC
CCTCCTTTAAATTTTCCCCCCTGGGCGTCTTCCCGCAGGACTTCAAGTGG
AGCTTGATTCAGGAGGCGATTGCGGCGGCCGAAGGCATCGATTTCAGCGA
AGTCCCGTCATTTTTGCTGAGGGAAAATCCGGTCGTGTGGACGTAACGAC
GGGCGGCTTTGGAGTAGGAGGGGGAGGGAAGCGAAAGAAGAGGTGGGAAC
GAGAAGAGGGTCGATTGTTGTGCAAGTGGGTAAGTGGATAGGAAAGGATG
TCCGGGTAGGGATCAGCGCAGCGGGCGCATATTGGTTTTGCAATGAGATG
AGACGAGATTAAGCAATTATGCATTGGCGCGCAAAATTGTGAGGGTGAGA
CGTTCGATGAGCTTTGAGAAAAAAGTTTGTGCCCGGAAAAATTTTGGTCG
TACCAAGGAAGAGGGGCCAGTGAGGCAGTGGATGGATGGTGCGGTTTGTT
GTCGGAGTTTTGTCCAGCCAGCGTGAAGAGACGGTGTTAGCAAGGATATC
GCCGGGACGAGATAGGCTCAGATGCGGTCTTTTCTCGAAGCGAAGGAAAA
AGGATAATTTTCCGGGTATGCGTGAACGTTAAAGGGCGGACCTGAACGTA
TCGAGGCGAATGGGATGGTGTGCAACGGGGAAGACTACCTTCATTGACTC
GTCGTTCTCATGCTGGAGGAGGCGTCAGCGGGGCCTTCGGTATGAGAGCC
GAGCCTCAGAAGCTGGTTTCATCTTGGGCAGCTCTCCTCGTCCACTACAC
AACTTGCATCTCGAAAGTTACCAGTCTCTAAAAACGAACCAGGTTTCCAA
GACAGAAGCAAAGACGAAGCAACGAGAAAATGAACCAATTACTACCGAGC
TCCGC
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Coding sequence (CDS) from alignment at CM002466.1:989989..991643-

>rna5850 ID=rna5850|Name=rna5850|organism=Nannochloropsis gaditana|type=CDS|length=1251bp|location=Sequence derived from alignment at CM002466.1:989989..991643- (Nannochloropsis gaditana)
GACTTCAAGTGGAGCTTGATTCAGGAGGCGATTGCGGCGGCCGAAGGCAT
CGATTTCAGCGAAGTCCCGTCATTTTTGCTGAGGGAAAATCCGGTCGTGT
GGACGTAAACGGATGCGGCGGCCCGCCAAGAGGCCATCGCCCATTTTCGC
GCCATTTTGTTGGAAACGACCCAGACAGAGACGGAGAAAATGCAGGAGTC
TGTGAGCTGGGCTAAATTTGGGGAGAACAGTCTGAAGGAAGTAGGTGGGG
GGGGGGAAGACACAGAGGTGCAGCGACTGCCCTTTCCGGTCTCTTTATTT
TTGCTTCTAATGCTTCCATCACAGGTGCGCAGCATTAATATAAAGGAAAA
TCTCGCGACAGACGGGCGGTCGATCGAGGAAAAACAAGCCGCTGTCCGGG
CGGAGCTTCAGGCGAAGGACTTCAAGTGGAGCTTGATTCAGGAGGCGATT
GCGGCGGCCGAAGGCATCGATTTCAGCGAAGTCCCGTCATTTTTGCTGAG
GGAAAATCCGGTCGTGTGGACGTAAACGGATGCGGCGGCCCGCCAAGAGG
CCATCGCCCATTTTCGCGCCATTTTGTTGGAAACGACCCAGACAGAGACG
GAGAAAATGCAGGAGTCTGTGAGCTGGGCTAAATTTGGGGAGAACAGTCT
GAAGGAAGTAGGTGGGGGGGGGGAAGACACAGAGGTGCAGCGACTGCCCT
TTCCGGTCTCTTTATTTTTGCTTCTAATGCTTCCATCACAGGTGCGCAGC
ATTAATATAAAGGAAAATCTCGCGACAGACGGGCGGTCGATCGAGGAAAA
ACAAGCCGCTGTCCGGGCGGAGCTTCAGGCGAAGGACTTCAAGTGGAGCT
TGATTCAGGAGGCGATTGCGGCGGCCGAAGGCATCGATTTCAGCGAAGTC
CCGTCATTTTTGCTGAGGGAAAATCCGGTCGTGTGGACGTAAACGGATGC
GGCGGCCCGCCAAGAGGCCATCGCCCATTTTCGCGCCATTTTGTTGGAAA
CGACCCAGACAGAGACGGAGAAAATGCAGGAGTCTGTGAGCTGGGCTAAA
TTTGGGGAGAACAGTCTGAAGGAAGTAGGTGGGGGGGGGGAAGACACAGA
GGTGCAGCGACTGCCCTTTCCGGTCTCTTTATTTTTGCTTCTAATGCTTC
CATCACAGGTGCGCAGCATTAATATAAAGGAAAATCTCGCGACAGACGGG
CGGTCGATCGAGGAAAAACAAGCCGCTGTCCGGGCGGAGCTTCAGGCGAA
G
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Synonyms
Publications