EWM24838.1, cds5835 (CDS) Nannochloropsis gaditana

Overview
NameEWM24838.1
Unique Namecds5835
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:991464..991643 -
Alignment locationCM002466.1:991154..991282 -
Alignment locationCM002466.1:990698..990805 -

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Properties
Property NameValue
Protein idEWM24838.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100887g5.5889.mrna
GbkeyCDS
End range.
End range991643
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:991464..991643 -
CM002466.1supercontigCM002466.1:991154..991282 -
CM002466.1supercontigCM002466.1:990698..990805 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24838.1 vs. NCBI_GenBank
Match: gi|585106437|gb|EWM24838.1| (hypothetical protein Naga_100887g5, partial [Nannochloropsis gaditana])

HSP 1 Score: 277.33 bits (708), Expect = 1.875e-94
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
Query:    1 EVGGGGEDTEVQRLPFPVSLFLLLMLPSQVRSINIKENLATDGRSIEEKQAAVRAELQAKTDAAARQEAIAHFRAILLETTQTETEKMQESVSWAKFGENSLKDFKWSLIQEAIAAAEGIDFSEVPSFLLRENPVVWT 138
            EVGGGGEDTEVQRLPFPVSLFLLLMLPSQVRSINIKENLATDGRSIEEKQAAVRAELQAKTDAAARQEAIAHFRAILLETTQTETEKMQESVSWAKFGENSLKDFKWSLIQEAIAAAEGIDFSEVPSFLLRENPVVWT
Sbjct:    1 EVGGGGEDTEVQRLPFPVSLFLLLMLPSQVRSINIKENLATDGRSIEEKQAAVRAELQAKTDAAARQEAIAHFRAILLETTQTETEKMQESVSWAKFGENSLKDFKWSLIQEAIAAAEGIDFSEVPSFLLRENPVVWT 138          
BLAST of EWM24838.1 vs. NCBI_GenBank
Match: gi|971514088|dbj|GAQ84143.1| (hypothetical protein KFL_001770290 [Klebsormidium nitens])

HSP 1 Score: 79.337 bits (194), Expect = 7.722e-15
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = 0
Query:    3 GGGGEDTEVQRLPFPVSLFLLLM------LPSQVRSINIKENLATDGRSIEEKQAAVRAELQAKTDAAARQEAI----AHFRAILLETTQTETEKMQESVSWAKFGENSLKDFKWSLIQEAIAAAEGIDFSEVPSFLLRENPVVWT 138
            G G E+++   L FP     + +          V  I IK+ L  D R     +AA+RA+++A   A A ++         R +LLET++ + +K+  SVSWAKFGE SL+DFKW+L+ E +A  E I+F E  +FL R+  V +T
Sbjct:  207 GMGQEESKSFTLTFPADYKAVPLRNVAARFTVTVHEIGIKKMLEKDPRP----EAAIRADIEADLRATAERKTNDLIDQEVRRVLLETSEADVDKVAASVSWAKFGEKSLQDFKWNLLLEEVARNEKIEFEEAKAFLRRQATVNFT 348          
BLAST of EWM24838.1 vs. NCBI_GenBank
Match: gi|298712982|emb|CBJ26884.1| (FKBP-type peptidyl-prolyl cis-trans isomerase [Ectocarpus siliculosus])

HSP 1 Score: 66.6254 bits (161), Expect = 1.363e-10
Identity = 53/145 (36.55%), Postives = 76/145 (52.41%), Query Frame = 0
Query:    2 VGGGGEDTEVQRLPFPVSLFLLLMLPSQ------VRSINIKENLATDGRSIEEKQAAVRAE----LQAKTDAAARQEAIAHFRAILLETTQTETEKMQESVSWAKFGENSLKDFKWSLIQEAIAAAEGIDFSEVPSFLLRENPVV 136
            VG G  +T+V    FP    +  +   Q      V++I  KE    + RS +E +AA+R +    ++ +TD A   EA+  F   LL +     +K+  +VSWAKFGE S  DFKW+ I+E IA AEGI+   V  FL  E  V+
Sbjct:  109 VGMGQMETKVFPATFPEDFEIEGLRGKQALVQAVVKNIARKEVKEPETRSDDEVRAALRVKGEQTVKNRTDKAV-DEAVKKF---LLSSCNVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLRDEAEVI 249          
The following BLAST results are available for this feature:
BLAST of EWM24838.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585106437|gb|EWM24838.1|1.875e-94100.00hypothetical protein Naga_100887g5, partial [Nanno... [more]
gi|971514088|dbj|GAQ84143.1|7.722e-1536.30hypothetical protein KFL_001770290 [Klebsormidium ... [more]
gi|298712982|emb|CBJ26884.1|1.363e-1036.55FKBP-type peptidyl-prolyl cis-trans isomerase [Ect... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5850rna5850Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications