rna585, rna585 (mRNA) Nannochloropsis gaditana

Overview
Namerna585
Unique Namerna585
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length702
Alignment locationCM002455.1:1461934..1463076 +

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Properties
Property NameValue
ProductPyridoxal phosphate-dependent transferase, major domain protein
Orig transcript idgnl|cribi|Naga_100729g1.10073.mrna
Orig protein idgnl|cribi|Naga_100729g1.10073
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1461934..1463076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100729g1gene562Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna585rna585-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30089.1cds585Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna585 ID=rna585|Name=rna585|organism=Nannochloropsis gaditana|type=mRNA|length=702bp
ATGGTCTCTGTCACCCTGATCGAGGCCTCAGACCACATCCTGGGCTCCTT
CGATCGGCGGCTCGTCGATTACGTCGGACGTGTCTTCCAGGAGCGTCACG
TCCGCGTCTTGACGGACACCAGCGTCGAGAAGGTGGAGCCCAACGTGGCA
TGGCTCAAAGATGGAACGCCCCTCCATTTCGGTCTCTGTGTGTGGAGCAC
GGGAGTCAAAGCCACCCCCCTTGTCCAGGCCCTGCCCCCCTCCTTGTCCA
AAGGCCCAGGGGGCCGTCTCCTGGTTGACGGACGCCTCCGTCTCCAAGGC
CACGATCAGAAAGGTGTTTTTGCGGTCGGTGATTGTGCAATATCTGAAAC
AAGGCCCTTGCCGTGTCTGGCGCAGGTAGCGCAGCAACAAGCCAAGTATT
TGGGCGGAGTGTTGAACAAATATTCGGAGCCGCATGTGAACAAAGAAGTG
CCCCCATTCGAGTATCGGCATCTGGGGAGCATGGCACAGTTGGGCATGTG
GAAAGGGGTGGTTGATTCGGCGAAATTAGACGATAAAAAAGGGGACGAGG
ATGGCAAGAAAAGTGTGCTGACGGGTTGGACGGCTTTCCTACTCTGGCGT
GCGGCGTATTGGACGAAAAGTGTCTCATGGGCGAACAAGATTCTTATCCC
CATGTACTGGTTAAAAAGCTGGATATTTGGACGAGATATTTCCCGATTCT
GA
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protein sequence of rna585

>rna585-protein ID=rna585-protein|Name=rna585|organism=Nannochloropsis gaditana|type=polypeptide|length=168bp
MPTLDERLAAMDMDKSADDGPHLMSRQSTIAHPLEATYGYSFGYAYCART
MRKSVPKYRMPDAPLPANVVKTLIDDEMVLDGTPRMNLATFVTTYMEKEC
EDLMMEAARKNYIDIDEYPQTYEIQKRCVNILSHLWNAPLGAEEEGTGTS
TVGSSEAIMGNRMTSRIW
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mRNA from alignment at CM002455.1:1461934..1463076+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna585 ID=rna585|Name=rna585|organism=Nannochloropsis gaditana|type=mRNA|length=1143bp|location=Sequence derived from alignment at CM002455.1:1461934..1463076+ (Nannochloropsis gaditana)
ATGCCGACTCTTGACGAGCGCTTAGCTGCCATGGATATGGACAAAAGTGC
CGACGATGGGCCCCATCTCATGTCGCGACAGTCCACCATCGCCCACCCCC
TGGAGGCGACGTATGGATACAGGTAAGACAAAGTTAAAAAATAAAACATC
CGTTGGACGTACAGTAATCGATGCGCCTGACAATAATTTATGGGCTATGA
TGCGCGTTGCGTCGTTTGGTTCTCGGGAAACCTAAGGATTGGGATATGGC
AAAGAGTCTTCTAGGTGCTGCTGCTCACTTGCAACCCTCCACGTCCGACT
GAACTCTTTCTTCAGTTTTGGCTACGCGTACTGCGCTCGAACCATGCGGA
AATCTGTTCCTAAGTACCGCATGCCTGATGCTCCTTTGCCCGCCAACGTG
GTGAAGACCTTGATTGACGATGAGATGGTCCTGGATGGGACGCCACGCAT
GAATCTGGCCACGTTTGTGACGACGTAcatggagaaggaatgcGAGGACC
TCATGATGGAGGCCGCCAGGAAGAATTATATCGGTGAGGGGGGCATCTTT
GGTGGCTAAACATTTGTTTTGGAGGACTCAAATGGGTGGGAGACATGGCC
CCCCTGCACTCGCGAGCCACAACCTTTAATCCTTTGCACCACGACAGATA
TTGACGAGTACCCTCAAACGTACGAGATCCAGAAGCGGTGCGTGAACATT
CTTTCGCACCTCTGGAACGCACCTttgggagcggaggaaggtgagaaggg
agggaggggggaagggaggcaggaaaggagagagatagggagggaggaat
gagaaATGAGAGCGCAGAGCGCGGGTCAAATCCATCGAGATGGATGAAAG
CGCGCAGAAAGGGTGTTCATTACCTCTGCAGTGTTATCTTgaaaggggca
ggaggaggggaggaaggtcagTGGGATCGTGTGGCTCGATCTCAAGAGGT
TGAAGCGTCTTGGCCCAGACGTTGGAGACCGGGCGCAAGGTCTCAGAATC
CGAGCATTCCCCCACAGAGGGCACGGGCACGTCCACGGTGGGCTCGTCCG
AGGCCATTATGTTGGCGGTCCTCAACATGAAATGGGCCTGGCGAAAGAAG
CGCATCGCACAGGGGAAACCGCATGACAAGCCGAATTTGGTAG
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Coding sequence (CDS) from alignment at CM002455.1:1461934..1463076+

>rna585 ID=rna585|Name=rna585|organism=Nannochloropsis gaditana|type=CDS|length=2535bp|location=Sequence derived from alignment at CM002455.1:1461934..1463076+ (Nannochloropsis gaditana)
ATGCCGACTCTTGACGAGCGCTTAGCTGCCATGGATATGGACAAAAGTGC
CGACGATGGGCCCCATCTCATGTCGCGACAGTCCACCATCGCCCACCCCC
TGGAGGCGACGTATGGATACAGTTTTGGCTACGCGTACTGCGCTCGAACC
ATGCGGAAATCTGTTCCTAAGTACCGCATGCCTGATGCTCCTTTGCCCGC
CAACGTGGTGAAGACCTTGATTGACGATGAGATGGTCCTGGATGGGACGC
CACGCATGAATCTGGCCACGTTTGTGACGACGTAcatggagaaggaatgc
GAGGACCTCATGATGGAGGCCGCCAGGAAGAATTATATCGATATTGACGA
GTACCCTCAAACGTACGAGATCCAGAAGCGGTGCGTGAACATTCTTTCGC
ACCTCTGGAACGCACCTttgggagcggaggaagAGGGCACGGGCACGTCC
ACGGTGGGCTCGTCCGAGGCCATTATGGGAAACCGCATGACAAGCCGAAT
TTGGTAGATGCCGACTCTTGACGAGCGCTTAGCTGCCATGGATATGGACA
AAAGTGCCGACGATGGGCCCCATCTCATGTCGCGACAGTCCACCATCGCC
CACCCCCTGGAGGCGACGTATGGATACAGTTTTGGCTACGCGTACTGCGC
TCGAACCATGCGGAAATCTGTTCCTAAGTACCGCATGCCTGATGCTCCTT
TGCCCGCCAACGTGGTGAAGACCTTGATTGACGATGAGATGGTCCTGGAT
GGGACGCCACGCATGAATCTGGCCACGTTTGTGACGACGTAcatggagaa
ggaatgcGAGGACCTCATGATGGAGGCCGCCAGGAAGAATTATATCGATA
TTGACGAGTACCCTCAAACGTACGAGATCCAGAAGCGGTGCGTGAACATT
CTTTCGCACCTCTGGAACGCACCTttgggagcggaggaagAGGGCACGGG
CACGTCCACGGTGGGCTCGTCCGAGGCCATTATGGGAAACCGCATGACAA
GCCGAATTTGGTAGATGCCGACTCTTGACGAGCGCTTAGCTGCCATGGAT
ATGGACAAAAGTGCCGACGATGGGCCCCATCTCATGTCGCGACAGTCCAC
CATCGCCCACCCCCTGGAGGCGACGTATGGATACAGTTTTGGCTACGCGT
ACTGCGCTCGAACCATGCGGAAATCTGTTCCTAAGTACCGCATGCCTGAT
GCTCCTTTGCCCGCCAACGTGGTGAAGACCTTGATTGACGATGAGATGGT
CCTGGATGGGACGCCACGCATGAATCTGGCCACGTTTGTGACGACGTAca
tggagaaggaatgcGAGGACCTCATGATGGAGGCCGCCAGGAAGAATTAT
ATCGATATTGACGAGTACCCTCAAACGTACGAGATCCAGAAGCGGTGCGT
GAACATTCTTTCGCACCTCTGGAACGCACCTttgggagcggaggaagAGG
GCACGGGCACGTCCACGGTGGGCTCGTCCGAGGCCATTATGGGAAACCGC
ATGACAAGCCGAATTTGGTAGATGCCGACTCTTGACGAGCGCTTAGCTGC
CATGGATATGGACAAAAGTGCCGACGATGGGCCCCATCTCATGTCGCGAC
AGTCCACCATCGCCCACCCCCTGGAGGCGACGTATGGATACAGTTTTGGC
TACGCGTACTGCGCTCGAACCATGCGGAAATCTGTTCCTAAGTACCGCAT
GCCTGATGCTCCTTTGCCCGCCAACGTGGTGAAGACCTTGATTGACGATG
AGATGGTCCTGGATGGGACGCCACGCATGAATCTGGCCACGTTTGTGACG
ACGTAcatggagaaggaatgcGAGGACCTCATGATGGAGGCCGCCAGGAA
GAATTATATCGATATTGACGAGTACCCTCAAACGTACGAGATCCAGAAGC
GGTGCGTGAACATTCTTTCGCACCTCTGGAACGCACCTttgggagcggag
gaagAGGGCACGGGCACGTCCACGGTGGGCTCGTCCGAGGCCATTATGGG
AAACCGCATGACAAGCCGAATTTGGTAGATGCCGACTCTTGACGAGCGCT
TAGCTGCCATGGATATGGACAAAAGTGCCGACGATGGGCCCCATCTCATG
TCGCGACAGTCCACCATCGCCCACCCCCTGGAGGCGACGTATGGATACAG
TTTTGGCTACGCGTACTGCGCTCGAACCATGCGGAAATCTGTTCCTAAGT
ACCGCATGCCTGATGCTCCTTTGCCCGCCAACGTGGTGAAGACCTTGATT
GACGATGAGATGGTCCTGGATGGGACGCCACGCATGAATCTGGCCACGTT
TGTGACGACGTAcatggagaaggaatgcGAGGACCTCATGATGGAGGCCG
CCAGGAAGAATTATATCGATATTGACGAGTACCCTCAAACGTACGAGATC
CAGAAGCGGTGCGTGAACATTCTTTCGCACCTCTGGAACGCACCTttggg
agcggaggaagAGGGCACGGGCACGTCCACGGTGGGCTCGTCCGAGGCCA
TTATGGGAAACCGCATGACAAGCCGAATTTGGTAG
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Synonyms
Publications