EWM30089.1, cds585 (CDS) Nannochloropsis gaditana

Overview
NameEWM30089.1
Unique Namecds585
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1461934..1462055 +
Alignment locationCM002455.1:1462249..1462466 +
Alignment locationCM002455.1:1462581..1462673 +
Alignment locationCM002455.1:1462951..1462993 +
Alignment locationCM002455.1:1463046..1463076 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30089.1
ProductPyridoxal phosphate-dependent transferase, major domain protein
Orig transcript idgnl|cribi|Naga_100729g1.10073.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1461934..1462055 +
CM002455.1supercontigCM002455.1:1462249..1462466 +
CM002455.1supercontigCM002455.1:1462581..1462673 +
CM002455.1supercontigCM002455.1:1462951..1462993 +
CM002455.1supercontigCM002455.1:1463046..1463076 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0006536glutamate metabolic process
GO:0019752carboxylic acid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005488binding
GO:0004351glutamate decarboxylase activity
GO:0016831carboxy-lyase activity
GO:0030170pyridoxal phosphate binding
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
Vocabulary: INTERPRO
TermDefinition
IPR015424PyrdxlP-dep_Trfase
IPR010107Glutamate_decarboxylase
IPR002129PyrdxlP-dep_de-COase
Homology
BLAST of EWM30089.1 vs. NCBI_GenBank
Match: gi|585112729|gb|EWM30089.1| (Pyridoxal phosphate-dependent transferase, major domain protein [Nannochloropsis gaditana])

HSP 1 Score: 352.829 bits (904), Expect = 3.033e-123
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query:    1 MPTLDERLAAMDMDKSADDGPHLMSRQSTIAHPLEATYGYSFGYAYCARTMRKSVPKYRMPDAPLPANVVKTLIDDEMVLDGTPRMNLATFVTTYMEKECEDLMMEAARKNYIDIDEYPQTYEIQKRCVNILSHLWNAPLGAEEEGTGTSTVGSSEAIMGNRMTSRIW 168
            MPTLDERLAAMDMDKSADDGPHLMSRQSTIAHPLEATYGYSFGYAYCARTMRKSVPKYRMPDAPLPANVVKTLIDDEMVLDGTPRMNLATFVTTYMEKECEDLMMEAARKNYIDIDEYPQTYEIQKRCVNILSHLWNAPLGAEEEGTGTSTVGSSEAIMGNRMTSRIW
Sbjct:    1 MPTLDERLAAMDMDKSADDGPHLMSRQSTIAHPLEATYGYSFGYAYCARTMRKSVPKYRMPDAPLPANVVKTLIDDEMVLDGTPRMNLATFVTTYMEKECEDLMMEAARKNYIDIDEYPQTYEIQKRCVNILSHLWNAPLGAEEEGTGTSTVGSSEAIMGNRMTSRIW 168          
BLAST of EWM30089.1 vs. NCBI_GenBank
Match: gi|553185252|ref|XP_005854222.1| (glutamate decarboxylase, partial [Nannochloropsis gaditana CCMP526] >gi|422294836|gb|EKU22136.1| glutamate decarboxylase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 228.024 bits (580), Expect = 1.925e-73
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0
Query:   51 MRKSVPKYRMPDAPLPANVVKTLIDDEMVLDGTPRMNLATFVTTYMEKECEDLMMEAARKNYIDIDEYPQTYEIQKRCVNILSHLWNAPLGAEEEGTGTSTVGSSEAIM 159
            MRKSVPKYRMPDAPLPANVVKTLIDDEMVLDGTPRMNLATFVTTYMEKECEDLMMEAARKNYIDIDEYPQTYEIQKRCVNILSHLWNAPLGAEEEGTGTSTVGSSEAIM
Sbjct:    1 MRKSVPKYRMPDAPLPANVVKTLIDDEMVLDGTPRMNLATFVTTYMEKECEDLMMEAARKNYIDIDEYPQTYEIQKRCVNILSHLWNAPLGAEEEGTGTSTVGSSEAIM 109          
BLAST of EWM30089.1 vs. NCBI_GenBank
Match: gi|922353928|ref|XP_013452780.1| (glutamate decarboxylase [Medicago truncatula] >gi|657383014|gb|KEH26808.1| glutamate decarboxylase [Medicago truncatula])

HSP 1 Score: 157.147 bits (396), Expect = 1.509e-42
Identity = 70/136 (51.47%), Postives = 100/136 (73.53%), Query Frame = 0
Query:   24 MSRQSTIAHPLEATYGYSFGYAYCARTMRKSVPKYRMPDAPLPANVVKTLIDDEMVLDGTPRMNLATFVTTYMEKECEDLMMEAARKNYIDIDEYPQTYEIQKRCVNILSHLWNAPLGAEEEGTGTSTVGSSEAIM 159
            M   ST++HP E     S    + +R +R+ VPK++MP+  +P +    +I+DE++LDG PR+NLA+FVTT+ME EC+ L+M++  KNY+D+DEYP T E+Q RCVNI++HL+NAP+G+EE   G  TVGSSEAIM
Sbjct:    1 MVISSTVSHPDEQNE--SIACTFASRYVREQVPKFKMPENSIPKDAAYQIINDELMLDGKPRLNLASFVTTWMEPECDKLIMDSLNKNYVDMDEYPVTTELQNRCVNIIAHLFNAPIGSEETAVGVGTVGSSEAIM 134          
BLAST of EWM30089.1 vs. NCBI_GenBank
Match: gi|1142968971|gb|AQM32552.1| (glutamate decarboxylase 2 [Caragana korshinskii])

HSP 1 Score: 157.147 bits (396), Expect = 1.641e-42
Identity = 71/136 (52.21%), Postives = 99/136 (72.79%), Query Frame = 0
Query:   24 MSRQSTIAHPLEATYGYSFGYAYCARTMRKSVPKYRMPDAPLPANVVKTLIDDEMVLDGTPRMNLATFVTTYMEKECEDLMMEAARKNYIDIDEYPQTYEIQKRCVNILSHLWNAPLGAEEEGTGTSTVGSSEAIM 159
            M   ST+ HP E  +G S    + +R MR+SVPK++MP+  +P +    +I+DE++LDG PR+NLA+FVTT+ME EC+ L+M +  KNY+D+DEYP T E+Q RCVNI++HL++AP+G  E   G  TVGSSEAIM
Sbjct:    1 MVITSTVTHPDE--HGQSLDCTFASRYMRESVPKFKMPEGSIPKDAAYQIINDELMLDGKPRLNLASFVTTWMEPECDKLIMASLNKNYVDMDEYPVTTELQNRCVNIIAHLFHAPIGESEVAVGVGTVGSSEAIM 134          
BLAST of EWM30089.1 vs. NCBI_GenBank
Match: gi|388492338|gb|AFK34235.1| (unknown [Medicago truncatula])

HSP 1 Score: 156.762 bits (395), Expect = 2.131e-42
Identity = 70/136 (51.47%), Postives = 100/136 (73.53%), Query Frame = 0
Query:   24 MSRQSTIAHPLEATYGYSFGYAYCARTMRKSVPKYRMPDAPLPANVVKTLIDDEMVLDGTPRMNLATFVTTYMEKECEDLMMEAARKNYIDIDEYPQTYEIQKRCVNILSHLWNAPLGAEEEGTGTSTVGSSEAIM 159
            M   ST++HP E     S    + +R +R+ VPK++MP+  +P +    +I+DE++LDG PR+NLA+FVTT+ME EC+ L+M++  KNY+D+DEYP T E+Q RCVNI++HL+NAP+G+EE   G  TVGSSEAIM
Sbjct:    1 MVISSTVSHPDEQNE--SIACTFASRYVREQVPKFKMPENSIPKDAAYRIINDELMLDGKPRLNLASFVTTWMEPECDKLIMDSLNKNYVDMDEYPVTTELQNRCVNIIAHLFNAPIGSEETAVGVGTVGSSEAIM 134          
BLAST of EWM30089.1 vs. NCBI_GenBank
Match: gi|703116132|ref|XP_010101062.1| (Glutamate decarboxylase 1 [Morus notabilis] >gi|587898330|gb|EXB86772.1| Glutamate decarboxylase 1 [Morus notabilis])

HSP 1 Score: 147.517 bits (371), Expect = 4.111e-42
Identity = 62/114 (54.39%), Postives = 87/114 (76.32%), Query Frame = 0
Query:   46 YCARTMRKSVPKYRMPDAPLPANVVKTLIDDEMVLDGTPRMNLATFVTTYMEKECEDLMMEAARKNYIDIDEYPQTYEIQKRCVNILSHLWNAPLGAEEEGTGTSTVGSSEAIM 159
            + +R +R S+P+++MP+  +P      +I+DE++LDG PR+NLA+FVTT+ME EC+ L+M +  KNY+D+DEYP T E+Q RCVNI++HL+NAPLG  E   G  TVGSSEAIM
Sbjct:   18 FASRYVRTSLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNIIAHLFNAPLGESEAAVGVGTVGSSEAIM 131          
BLAST of EWM30089.1 vs. NCBI_GenBank
Match: gi|1173122927|ref|XP_020526109.1| (glutamate decarboxylase 1-like [Amborella trichopoda])

HSP 1 Score: 147.132 bits (370), Expect = 5.701e-42
Identity = 63/114 (55.26%), Postives = 87/114 (76.32%), Query Frame = 0
Query:   46 YCARTMRKSVPKYRMPDAPLPANVVKTLIDDEMVLDGTPRMNLATFVTTYMEKECEDLMMEAARKNYIDIDEYPQTYEIQKRCVNILSHLWNAPLGAEEEGTGTSTVGSSEAIM 159
            + +R +R S+P++RM +  +P      +I+DE++LDG PR+NLA+FVTT+ME EC+ L+M A  KNY+D+DEYP T E+Q RCVN+++HL+NAPLG EE   G  TVGSSEAIM
Sbjct:   18 FASRYVRASLPRFRMAENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGEEETAVGVGTVGSSEAIM 131          
BLAST of EWM30089.1 vs. NCBI_GenBank
Match: gi|502173062|ref|XP_004515245.1| (PREDICTED: glutamate decarboxylase-like [Cicer arietinum])

HSP 1 Score: 155.606 bits (392), Expect = 5.999e-42
Identity = 70/136 (51.47%), Postives = 100/136 (73.53%), Query Frame = 0
Query:   24 MSRQSTIAHPLEATYGYSFGYAYCARTMRKSVPKYRMPDAPLPANVVKTLIDDEMVLDGTPRMNLATFVTTYMEKECEDLMMEAARKNYIDIDEYPQTYEIQKRCVNILSHLWNAPLGAEEEGTGTSTVGSSEAIM 159
            M   ST+ HP E  +  +    + +R +R+ VPK++MP++ +P +    +I+DE++LDG PR+NLA+FVTT+ME EC+ L+M +  KNY+D+DEYP T E+Q RCVNI++HL+NAP+GAEE   G  TVGSSEAIM
Sbjct:    1 MVITSTVTHPDE--HRQNIDCTFASRYVREPVPKFKMPESSIPKDAAYQIINDELMLDGKPRLNLASFVTTWMEPECDKLIMASLNKNYVDMDEYPVTTELQNRCVNIIAHLFNAPIGAEETAVGVGTVGSSEAIM 134          
BLAST of EWM30089.1 vs. NCBI_GenBank
Match: gi|218194936|gb|EEC77363.1| (hypothetical protein OsI_16068 [Oryza sativa Indica Group])

HSP 1 Score: 148.288 bits (373), Expect = 1.417e-41
Identity = 62/114 (54.39%), Postives = 89/114 (78.07%), Query Frame = 0
Query:   46 YCARTMRKSVPKYRMPDAPLPANVVKTLIDDEMVLDGTPRMNLATFVTTYMEKECEDLMMEAARKNYIDIDEYPQTYEIQKRCVNILSHLWNAPLGAEEEGTGTSTVGSSEAIM 159
            + +R +R ++P++RMP+  +P +    +I+DE++LDG PR+NLA+FVTT+ME EC+ LMM A  KNY+D+DEYP T E+Q RCVN+++HL+NAP+G +E   G  TVGSSEAIM
Sbjct:   17 FASRYVRTALPRFRMPEKSIPKDAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPIGDDETAVGVGTVGSSEAIM 130          
BLAST of EWM30089.1 vs. NCBI_GenBank
Match: gi|1191646251|gb|OTF98224.1| (putative pyridoxal phosphate-dependent decarboxylase, Pyridoxal phosphate-dependent transferase [Helianthus annuus])

HSP 1 Score: 149.058 bits (375), Expect = 2.267e-41
Identity = 65/119 (54.62%), Postives = 89/119 (74.79%), Query Frame = 0
Query:   41 SFGYAYCARTMRKSVPKYRMPDAPLPANVVKTLIDDEMVLDGTPRMNLATFVTTYMEKECEDLMMEAARKNYIDIDEYPQTYEIQKRCVNILSHLWNAPLGAEEEGTGTSTVGSSEAIM 159
            S    + +R +R S+P+++MP+  +P      +I+DE++LDG PR+NLA+FVTT+ME EC+ LMM A  KNY+D+DEYP T E+Q RCVN+++HL+NAPLG EE   G  TVGSSEAIM
Sbjct:   14 SLHSTFASRYVRTSLPRFKMPEESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDEETAVGVGTVGSSEAIM 132          
The following BLAST results are available for this feature:
BLAST of EWM30089.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112729|gb|EWM30089.1|3.033e-123100.00Pyridoxal phosphate-dependent transferase, major d... [more]
gi|553185252|ref|XP_005854222.1|1.925e-73100.00glutamate decarboxylase, partial [Nannochloropsis ... [more]
gi|922353928|ref|XP_013452780.1|1.509e-4251.47glutamate decarboxylase [Medicago truncatula] >gi|... [more]
gi|1142968971|gb|AQM32552.1|1.641e-4252.21glutamate decarboxylase 2 [Caragana korshinskii][more]
gi|388492338|gb|AFK34235.1|2.131e-4251.47unknown [Medicago truncatula][more]
gi|703116132|ref|XP_010101062.1|4.111e-4254.39Glutamate decarboxylase 1 [Morus notabilis] >gi|58... [more]
gi|1173122927|ref|XP_020526109.1|5.701e-4255.26glutamate decarboxylase 1-like [Amborella trichopo... [more]
gi|502173062|ref|XP_004515245.1|5.999e-4251.47PREDICTED: glutamate decarboxylase-like [Cicer ari... [more]
gi|218194936|gb|EEC77363.1|1.417e-4154.39hypothetical protein OsI_16068 [Oryza sativa Indic... [more]
gi|1191646251|gb|OTF98224.1|2.267e-4154.62putative pyridoxal phosphate-dependent decarboxyla... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna585rna585Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications