rna5849, rna5849 (mRNA) Nannochloropsis gaditana

Overview
Namerna5849
Unique Namerna5849
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length315
Alignment locationCM002466.1:987812..990008 +

Link to JBrowse

Properties
Property NameValue
Productubiquitin-conjugating enzyme
Orig transcript idgnl|cribi|Naga_100887g2.5891.mrna
Orig protein idgnl|cribi|Naga_100887g2.5891
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:987812..990008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100887g2gene5646Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5849rna5849-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24840.1cds5834Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5849 ID=rna5849|Name=rna5849|organism=Nannochloropsis gaditana|type=mRNA|length=315bp
ATGCTCAATTATGTGGAGGAACTTGCCAGGCTCATGCACGTCAACGAAAA
AGGAAGGAAAGCGTCAGGAGGAGAGCACGGTGACGAGAAGGACGAAGAAG
GGGCGCCCATGGAGGGTGGCAGGGAGCCGAATGAAGGCAATTTAGAGGGG
CCGACAGGCGTGGGGTTGAGTGCTTTGAGAGCCACGACCCTGGGGGAAGA
GGCATTACCCGGCGCCTTGAGTCTCTATGTAAAGCGGGCGGGGTGGGTAG
TGGAGAAGGAAACTGCGTACGGCAAGGAGGGAGAAGTTCTGTACCATCTT
TGTAAACAGCTTTGA
back to top

protein sequence of rna5849

>rna5849-protein ID=rna5849-protein|Name=rna5849|organism=Nannochloropsis gaditana|type=polypeptide|length=129bp
MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPDDSPYSGAVF
FLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTVS
KVLLSICSLLTDPNPDDPLGSRNRPTLPH
back to top

mRNA from alignment at CM002466.1:987812..990008+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5849 ID=rna5849|Name=rna5849|organism=Nannochloropsis gaditana|type=mRNA|length=2197bp|location=Sequence derived from alignment at CM002466.1:987812..990008+ (Nannochloropsis gaditana)
CCACCGTGTTTAAGGTCCCTACACCAGCGACACCAGATGTGATCCTCCAA
ACAGACGAATTTCAGTGTGCAAAGCGCCTGGACTCAACCATGTTGCAGAA
GGTACGTCGTTCGGAAGTAGTATCGGAACAAAAACATGGACCAAATTAAT
GTTGGCAAACGGGTTATGGAGGGGCGAGACCGGCCCCACCGGCGCCGGAC
AAGGAGAAAATGGGGCCAGCAAAACGTCCATGGACACGACAAATGTGCAG
GCCGGCATTCGTGTATGCCTTTCCATGAGCTTGTGTGCCGGGTATGGCCA
ACCCTTTGCGCGCCTGCGTCCATGGTGGCTGGGTTGTTGGTCGTGTGCTG
TGGTATAAGCTGACAGCCTGGGGTCGATGGCCTACCACGCACCACCACTC
CTCTCCTTTAAGCATTGCCTTGTACTTACTGTCTCGCACGTCCACTCCAT
GCGTGTAGCAGGATATAACAAACATTTACACGAAAGGAGATGGCACTAAA
GAGGATTAACAAGGAGCTCCAGGACCTAGGTGCGTCTTTTTAGGAACAGA
AAGGCATGGAATAGGGGGAGacgccagggaggagggtaccGGTGCCTTTG
GACGCAAGAATTTTGGGATCCATGGTGGAATACGCGGTTACAAGTGTACA
GGTTTCTTGAAAGTGGACAGAATTGGTCTGATGCGAGGGCTTTTCCGTCT
TTTTTGTGAAATTTTTCGgcgcttttcctcttctctgaCGTTTCTCCGCC
ATCTCATGTTCTGACCCTAGGACGAGACCCGCCCGCTAATTGCTCAGCAG
GCCCCGTAGGCGATGACCTTTTCCATTGGCAAGCCACCATCATGGGGCCA
GGCAAGTACTGGGTTCTGCTGGAAAGTCATGCTCCTTTGCCTGTGAAAGC
TTCGGTTCCGCACCACGTGTTGGAagactccctccctgacaccttctctt
cctcacACAGACGACTCGCCCTACAGCGGAGCAGTTTTTTTCTTGAACAT
CCATTTTCCTGCAGACTATCCTTTCAAGCCTCCCAAGGTACTCGTGAGGG
GCAATcggagggatgaagaaaatgTATCGATAACCCACCGCCGATGGGAT
GAACGGATTGTGTCTTTTTTGAGAATGGCTTTGCGGCTGCGTTTTAACCT
TGATATGCCGCTTCACTGCCTCATCCCTTCCTGTCTGACTCTTTGAAATC
CTTTTGAGTCGGCATCCACATCCTGATCGTGATCTTTGGGTTGCTCTCGT
CTCTATTTGCGCCAGGTGAATTTTACGACCCGCATCTACCACTGCAACAT
CAACGCCAACGGTGGCATTTGCCTCGACATCCTTAAGGATCAGTGGAGCC
CGGCGTTGACCGTCTCCAAGGCACGTCAATCTCTGCCCCTCACCCTCGCG
ATACCATCGGGCtcaccccccctttcctttggcaggtcctcctctccatt
tgCTCCTTGCTGACGGACCCAAACCCCGACGACCCCCTCGGTTCCCGAAA
TCGCCCAACTCTACCGCACTGACCGGGGGAGACACGACGCCACCGCGCGA
GAATGGACGGCCaagtaaggagggagggagggagggaggagttgggggga
gggatggaaaaacGTTCTAGTTTGATCCCTGACTACACCGCCTAGCTAAC
CTGAGTACCGTTCCCTTTTTTCCAAAGGTATGCCATGTAGTCGTTACTGa
gccccctcttctttgatggaagtggagaaggaggggtggtgtCGGGCGGC
ACTGTGAGGATTTGAAGGGAAACACAaagcgatggagggggaaggaaaat
tggCACGGGAGTGTCACGAGCTAGTggaaaaagcgagggaatgaggagct
agggagggaaaggggcaagCCTGCAGTGTACATATGACCCTCCAAAAGCG
GGCGTTGAAGAGATGAGAgccaagggggggaggaatcagcggatcggaac
ggttGGACACAGAGGTTCGGGAGCGCTGGCGGTGGGATGGCTGgtgacaa
ggaaggagagggtgagcgtgcttctttttcgcctCGGGCGACTCGCGTGT
CTCCCTCTGGCTCGCTAGACGTTTTTTGTTTTGCTGCCAGCCACCCTTGC
acctcctgtccttctctcctcttcccatccGAATGGAAAAAGGATGGCAC
TTGAAGGGATCTttaagaaagaaaaaagcggAGCTCGGTAGTAATTG
back to top

Coding sequence (CDS) from alignment at CM002466.1:987812..990008+

>rna5849 ID=rna5849|Name=rna5849|organism=Nannochloropsis gaditana|type=CDS|length=1950bp|location=Sequence derived from alignment at CM002466.1:987812..990008+ (Nannochloropsis gaditana)
ATGGCACTAAAGAGGATTAACAAGGAGCTCCAGGACCTAGGACGAGACCC
GCCCGCTAATTGCTCAGCAGGCCCCGTAGGCGATGACCTTTTCCATTGGC
AAGCCACCATCATGGGGCCAGACGACTCGCCCTACAGCGGAGCAGTTTTT
TTCTTGAACATCCATTTTCCTGCAGACTATCCTTTCAAGCCTCCCAAGGT
GAATTTTACGACCCGCATCTACCACTGCAACATCAACGCCAACGGTGGCA
TTTGCCTCGACATCCTTAAGGATCAGTGGAGCCCGGCGTTGACCGTCTCC
AAGgtcctcctctccatttgCTCCTTGCTGACGGACCCAAACCCCGACGA
CCCCCTCGGTTCCCGAAATCGCCCAACTCTACCGCACTGAATGGCACTAA
AGAGGATTAACAAGGAGCTCCAGGACCTAGGACGAGACCCGCCCGCTAAT
TGCTCAGCAGGCCCCGTAGGCGATGACCTTTTCCATTGGCAAGCCACCAT
CATGGGGCCAGACGACTCGCCCTACAGCGGAGCAGTTTTTTTCTTGAACA
TCCATTTTCCTGCAGACTATCCTTTCAAGCCTCCCAAGGTGAATTTTACG
ACCCGCATCTACCACTGCAACATCAACGCCAACGGTGGCATTTGCCTCGA
CATCCTTAAGGATCAGTGGAGCCCGGCGTTGACCGTCTCCAAGgtcctcc
tctccatttgCTCCTTGCTGACGGACCCAAACCCCGACGACCCCCTCGGT
TCCCGAAATCGCCCAACTCTACCGCACTGAATGGCACTAAAGAGGATTAA
CAAGGAGCTCCAGGACCTAGGACGAGACCCGCCCGCTAATTGCTCAGCAG
GCCCCGTAGGCGATGACCTTTTCCATTGGCAAGCCACCATCATGGGGCCA
GACGACTCGCCCTACAGCGGAGCAGTTTTTTTCTTGAACATCCATTTTCC
TGCAGACTATCCTTTCAAGCCTCCCAAGGTGAATTTTACGACCCGCATCT
ACCACTGCAACATCAACGCCAACGGTGGCATTTGCCTCGACATCCTTAAG
GATCAGTGGAGCCCGGCGTTGACCGTCTCCAAGgtcctcctctccatttg
CTCCTTGCTGACGGACCCAAACCCCGACGACCCCCTCGGTTCCCGAAATC
GCCCAACTCTACCGCACTGAATGGCACTAAAGAGGATTAACAAGGAGCTC
CAGGACCTAGGACGAGACCCGCCCGCTAATTGCTCAGCAGGCCCCGTAGG
CGATGACCTTTTCCATTGGCAAGCCACCATCATGGGGCCAGACGACTCGC
CCTACAGCGGAGCAGTTTTTTTCTTGAACATCCATTTTCCTGCAGACTAT
CCTTTCAAGCCTCCCAAGGTGAATTTTACGACCCGCATCTACCACTGCAA
CATCAACGCCAACGGTGGCATTTGCCTCGACATCCTTAAGGATCAGTGGA
GCCCGGCGTTGACCGTCTCCAAGgtcctcctctccatttgCTCCTTGCTG
ACGGACCCAAACCCCGACGACCCCCTCGGTTCCCGAAATCGCCCAACTCT
ACCGCACTGAATGGCACTAAAGAGGATTAACAAGGAGCTCCAGGACCTAG
GACGAGACCCGCCCGCTAATTGCTCAGCAGGCCCCGTAGGCGATGACCTT
TTCCATTGGCAAGCCACCATCATGGGGCCAGACGACTCGCCCTACAGCGG
AGCAGTTTTTTTCTTGAACATCCATTTTCCTGCAGACTATCCTTTCAAGC
CTCCCAAGGTGAATTTTACGACCCGCATCTACCACTGCAACATCAACGCC
AACGGTGGCATTTGCCTCGACATCCTTAAGGATCAGTGGAGCCCGGCGTT
GACCGTCTCCAAGgtcctcctctccatttgCTCCTTGCTGACGGACCCAA
ACCCCGACGACCCCCTCGGTTCCCGAAATCGCCCAACTCTACCGCACTGA
back to top
Synonyms
Publications