EWM24840.1, cds5834 (CDS) Nannochloropsis gaditana

Overview
NameEWM24840.1
Unique Namecds5834
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:988301..988340 +
Alignment locationCM002466.1:988582..988662 +
Alignment locationCM002466.1:988772..988848 +
Alignment locationCM002466.1:989077..989181 +
Alignment locationCM002466.1:989247..989333 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24840.1
Productubiquitin-conjugating enzyme
Orig transcript idgnl|cribi|Naga_100887g2.5891.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:988301..988340 +
CM002466.1supercontigCM002466.1:988582..988662 +
CM002466.1supercontigCM002466.1:988772..988848 +
CM002466.1supercontigCM002466.1:989077..989181 +
CM002466.1supercontigCM002466.1:989247..989333 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR023313UBQ-conjugating_AS
IPR000608UBQ-conjugat_E2
IPR016135UBQ-conjugating_enzyme/RWD
Homology
[Close]
BLAST of EWM24840.1 vs. NCBI_GenBank
Match: gi|585106439|gb|EWM24840.1| (ubiquitin-conjugating enzyme [Nannochloropsis gaditana])

HSP 1 Score: 266.544 bits (680), Expect = 2.372e-90
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 
Query:    1 MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPDDSPYSGAVFFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTVSKVLLSICSLLTDPNPDDPLGSRNRPTLPH 129
            MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPDDSPYSGAVFFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTVSKVLLSICSLLTDPNPDDPLGSRNRPTLPH
Sbjct:    1 MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPDDSPYSGAVFFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTVSKVLLSICSLLTDPNPDDPLGSRNRPTLPH 129
[Close]
BLAST of EWM24840.1 vs. NCBI_GenBank
Match: gi|669150424|ref|XP_008610774.1| (ubiquitin-conjugating enzyme E2 4 [Saprolegnia diclina VS20] >gi|813142035|ref|XP_012199157.1| ubiquitin-conjugating enzyme E2 4 [Saprolegnia parasitica CBS 223.65] >gi|530737770|gb|EQC36012.1| ubiquitin-conjugating enzyme E2 4 [Saprolegnia diclina VS20] >gi|641536078|gb|KDO29974.1| ubiquitin-conjugating enzyme E2 4 [Saprolegnia parasitica CBS 223.65] >gi|1173950705|gb|OQR98652.1| ubiquitin-conjugating enzyme E2 [Achlya hypogyna])

HSP 1 Score: 239.58 bits (610), Expect = 2.105e-79
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 0 
Query:    1 MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPDDSPYSGAVFFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTVSKVLLSICSLLTDPNPDDPL 119
            MALKRINKELQDLG+DPPANCSAGPVGDDLFHWQATIMGP+DSPY+G V+FLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALT+SKVLLSICSLLTD NPDDPL
Sbjct:    1 MALKRINKELQDLGKDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVYFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDANPDDPL 119
[Close]
BLAST of EWM24840.1 vs. NCBI_GenBank
Match: gi|301122749|ref|XP_002909101.1| (ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4] >gi|675185161|ref|XP_008901465.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica INRA-310] >gi|695426840|ref|XP_009529522.1| hypothetical protein PHYSODRAFT_354820 [Phytophthora sojae] >gi|23394352|gb|AAN31466.1| ubiquitin-conjugating enzyme [Phytophthora infestans] >gi|262099863|gb|EEY57915.1| ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4] >gi|348675955|gb|EGZ15773.1| hypothetical protein PHYSODRAFT_354820 [Phytophthora sojae] >gi|566029745|gb|ETI52656.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica P1569] >gi|567967365|gb|ETK92544.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica] >gi|567995824|gb|ETL45952.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica] >gi|568025091|gb|ETL99111.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica] >gi|568055516|gb|ETM52261.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica] >gi|568098718|gb|ETN13445.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica INRA-310] >gi|570333350|gb|ETO81298.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica P1976] >gi|570957383|gb|ETP22362.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica CJ01A1] >gi|570992827|gb|ETP50243.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica P10297] >gi|725825431|gb|AIY34487.1| ubiquitin-conjugating enzyme [Phytophthora cactorum] >gi|970652363|gb|KUF91041.1| Isocitrate lyase [Phytophthora nicotianae] >gi|970663897|gb|KUG00959.1| Ubiquitin-conjugating enzyme [Phytophthora nicotianae] >gi|1214713580|gb|OWZ24467.1| Ubiquitin-conjugating enzyme E2 4 [Phytophthora megakarya])

HSP 1 Score: 239.195 bits (609), Expect = 2.199e-79
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 0 
Query:    1 MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPDDSPYSGAVFFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTVSKVLLSICSLLTDPNPDDPL 119
            MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGP+DSPY+G V+FLNI+FPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALT+SKVLLSICSLLTD NPDDPL
Sbjct:    1 MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVYFLNIYFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDANPDDPL 119
[Close]
BLAST of EWM24840.1 vs. NCBI_GenBank
Match: gi|585111683|gb|EWM29163.1| (ubiquitin conjugating enzyme [Nannochloropsis gaditana])

HSP 1 Score: 238.81 bits (608), Expect = 3.228e-79
Identity = 110/119 (92.44%), Postives = 117/119 (98.32%), Query Frame = 0 
Query:    1 MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPDDSPYSGAVFFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTVSKVLLSICSLLTDPNPDDPL 119
            MALKR+NKELQD+ RDPPANCSAGPVGDDLFHWQATIMGP+DSPY+G V++LNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALT+SKVLLSICSLLTDPNPDDPL
Sbjct:    1 MALKRVNKELQDISRDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVYYLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPL 119
[Close]
BLAST of EWM24840.1 vs. NCBI_GenBank
Match: gi|1173944482|gb|OQR93212.1| (ubiquitin-conjugating enzyme E2 [Thraustotheca clavata])

HSP 1 Score: 238.424 bits (607), Expect = 4.792e-79
Identity = 111/119 (93.28%), Postives = 117/119 (98.32%), Query Frame = 0 
Query:    1 MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPDDSPYSGAVFFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTVSKVLLSICSLLTDPNPDDPL 119
            MALKRINKELQDLG+DPPANCSAGPVG+DLFHWQATIMGP+DSPY+G V+FLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALT+SKVLLSICSLLTD NPDDPL
Sbjct:    1 MALKRINKELQDLGKDPPANCSAGPVGEDLFHWQATIMGPEDSPYAGGVYFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDANPDDPL 119
[Close]
BLAST of EWM24840.1 vs. NCBI_GenBank
Match: gi|673013810|ref|XP_008860866.1| (ubiquitin-conjugating enzyme E2-17 kDa [Aphanomyces invadans] >gi|574482464|gb|ETW09455.1| ubiquitin-conjugating enzyme E2-17 kDa [Aphanomyces invadans])

HSP 1 Score: 237.654 bits (605), Expect = 9.670e-79
Identity = 112/119 (94.12%), Postives = 116/119 (97.48%), Query Frame = 0 
Query:    1 MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPDDSPYSGAVFFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTVSKVLLSICSLLTDPNPDDPL 119
            MALKRINKEL DLG+DPPANCSAGPVGDDLFHWQATIMGP+DSPYSG V+FLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALT+SKVLLSICSLLTD NPDDPL
Sbjct:    1 MALKRINKELLDLGKDPPANCSAGPVGDDLFHWQATIMGPEDSPYSGGVYFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDANPDDPL 119
[Close]
BLAST of EWM24840.1 vs. NCBI_GenBank
Match: gi|299473248|emb|CBN77648.1| (conserved unknown protein (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 237.654 bits (605), Expect = 1.068e-78
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 0 
Query:    1 MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPDDSPYSGAVFFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTVSKVLLSICSLLTDPNPDDPL 119
            MALKRINKELQDLG+DPPANCSAGPV DDL+HWQATIMGPDDSPY+G VFFLNIHFPADYPFKPPKVNFTTRIYHCNIN+NGGICLDILKDQWSPALT+SKVLLSICSLLTDPNPDDPL
Sbjct:    1 MALKRINKELQDLGKDPPANCSAGPVTDDLYHWQATIMGPDDSPYAGGVFFLNIHFPADYPFKPPKVNFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPL 119
[Close]
BLAST of EWM24840.1 vs. NCBI_GenBank
Match: gi|698794030|ref|XP_009830044.1| (ubiquitin-conjugating enzyme E2-17 kDa [Aphanomyces astaci] >gi|574114633|gb|ETV80120.1| ubiquitin-conjugating enzyme E2-17 kDa [Aphanomyces astaci])

HSP 1 Score: 237.269 bits (604), Expect = 1.272e-78
Identity = 112/119 (94.12%), Postives = 116/119 (97.48%), Query Frame = 0 
Query:    1 MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPDDSPYSGAVFFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTVSKVLLSICSLLTDPNPDDPL 119
            MALKRINKEL DLG+DPPANCSAGPVGDDLFHWQATIMGP+DSPYSG V+FLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALT+SKVLLSICSLLTD NPDDPL
Sbjct:    1 MALKRINKELLDLGKDPPANCSAGPVGDDLFHWQATIMGPEDSPYSGGVYFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDANPDDPL 119
[Close]
BLAST of EWM24840.1 vs. NCBI_GenBank
Match: gi|944186131|dbj|BAT25234.1| (host ubiquitin conjugating E2 [Nitzschia sp. IriIs04])

HSP 1 Score: 234.572 bits (597), Expect = 1.870e-77
Identity = 109/119 (91.60%), Postives = 117/119 (98.32%), Query Frame = 0 
Query:    1 MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPDDSPYSGAVFFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTVSKVLLSICSLLTDPNPDDPL 119
            M+LKRINKEL DLG+DPPANCSAGPVGDD+FHWQATIMGPDDSPY+G VFFL+IHFPADYPFKPPKV+FTTRIYHCNIN+NGGICLDILKDQWSPALT+SKVLLSICSLLTDPNPDDPL
Sbjct:    1 MSLKRINKELVDLGKDPPANCSAGPVGDDMFHWQATIMGPDDSPYAGGVFFLDIHFPADYPFKPPKVHFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPL 119
[Close]
BLAST of EWM24840.1 vs. NCBI_GenBank
Match: gi|676385027|ref|XP_009035792.1| (ubiquitin-conjugating enzyme [Aureococcus anophagefferens] >gi|323453880|gb|EGB09751.1| ubiquitin-conjugating enzyme [Aureococcus anophagefferens])

HSP 1 Score: 234.572 bits (597), Expect = 1.875e-77
Identity = 114/125 (91.20%), Postives = 116/125 (92.80%), Query Frame = 0 
Query:    1 MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPDDSPYSGAVFFLNIHFPADYPFKPPK------VNFTTRIYHCNINANGGICLDILKDQWSPALTVSKVLLSICSLLTDPNPDDPL 119
            MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPDDSPY+G VFFLNIHFPADYPFKPPK        FTTRIYHCNINANGGICLDILKDQWSPALT+SKVLLSICSLLTDPNPDDPL
Sbjct:    1 MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPDDSPYTGGVFFLNIHFPADYPFKPPKARGPRPARFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPL 125
The following BLAST results are available for this feature:
BLAST of EWM24840.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106439|gb|EWM24840.1|2.372e-90100.00ubiquitin-conjugating enzyme [Nannochloropsis gadi... [more]
gi|669150424|ref|XP_008610774.1|2.105e-7994.12ubiquitin-conjugating enzyme E2 4 [Saprolegnia dic... [more]
gi|301122749|ref|XP_002909101.1|2.199e-7994.12ubiquitin-conjugating enzyme E2, putative [Phytoph... [more]
gi|585111683|gb|EWM29163.1|3.228e-7992.44ubiquitin conjugating enzyme [Nannochloropsis gadi... [more]
gi|1173944482|gb|OQR93212.1|4.792e-7993.28ubiquitin-conjugating enzyme E2 [Thraustotheca cla... [more]
gi|673013810|ref|XP_008860866.1|9.670e-7994.12ubiquitin-conjugating enzyme E2-17 kDa [Aphanomyce... [more]
gi|299473248|emb|CBN77648.1|1.068e-7894.12conserved unknown protein (Partial), partial [Ecto... [more]
gi|698794030|ref|XP_009830044.1|1.272e-7894.12ubiquitin-conjugating enzyme E2-17 kDa [Aphanomyce... [more]
gi|944186131|dbj|BAT25234.1|1.870e-7791.60host ubiquitin conjugating E2 [Nitzschia sp. IriIs... [more]
gi|676385027|ref|XP_009035792.1|1.875e-7791.20ubiquitin-conjugating enzyme [Aureococcus anophage... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5849rna5849Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications