rna5846, rna5846 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5846
Unique Name	rna5846
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2603
Alignment location	CM002466.1:983104..984706 -

Link to JBrowse

Properties


Property Name	Value
Product	sensitivity to red light reduced protein
Orig transcript id	gnl\|cribi\|Naga_100322g9.5906.mrna
Orig protein id	gnl\|cribi\|Naga_100322g9.5906
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:983104..984706 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100322g9	gene5643	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5846	rna5846-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24845.1	cds5831	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:983104..984706-
coding sequence from alignment at CM002466.1:983104..984706-

mRNA sequence

>rna5846 ID=rna5846|Name=rna5846|organism=Nannochloropsis gaditana|type=mRNA|length=2603bp
CTCTTCTTAACATGCTACTCGGGTTCGTTCCTCTCTCTCCCGCGTCACCC
GTCCCCTACCCTCAGGCTATTCCCCTGGAAACCGTCAAGGCGCTCTGGGA
CACCTCCGACAGACTTTCCATTTTCAATGTGGAGACGGTCAACAGTACCG
TGCGCTTTGGGATCTCTTACTGGCTGAACGCAGATGCCAATATGCGAGAC
ACTCTCTTAGCGCGATTCCGCCTTAACACATACCAATACACGATGCTGAC
GACGTACCTGCGCAGGATTTATGACTCGCCACTGCTGGAGACGTTCATCA
TCAAAAATTTCCTCAGCGGGCTGCCCCCTGGAGAAGTTGGCCTGGCTACT
GCCGAGATAGCGGACTGGTCCAGGTAGGGAGGGAGGAGAGGTGGACAGGC
TTTGTTTTAGACAGCTGGAACGTTCTCCCTGAAGGGTCTATTCAACAATT
AGTTGGAGTCATTGCGGGGAGTGAGACTGTCAGGATTATACCCGGATGTG
CGCATACTCATCCCTTCTTCAACCGTTTCTCGCACCCCGCAGCCTGACGT
GGCGACAATGGGCCGTTGGCGACGTCCTCCAGACTTTCAGTGGGGCGGCA
CTGCCTGAATCGGTCCTCCCGGAGACACCCCCTGAGCTGTCCTTCTACAT
GGCTGCCGTCGGAAAGCCCGTGTGGACCCCGGTCGGCATTGTCGTCGGTG
AGAACGAGGTCCCTCCGCCCATCAGCCCCGCGCGGTGGTCCCTGAAGCAA
ACGAAATGCATGCGGGACCTGATCTTGCGCGAGACAGACGCGGACTTCTT
CGCGGAAACCGTCCTGGGCTTGCCTCCCTCGCCCACTCAGACCTCTCGCA
AGACCTTCCTGGACGTCGAGTCCGCCATGGCCCGGTCCCCCGAGGCGAGC
AAGGCGGCGCTGGAGCAATGCCTGGTGTCTCAGGGCGCCTGGTCGGTCAT
GCTGGGGTACTTTGACTACCTGGGCCGCACTTTCGCAGGGCCTCACCTTC
GCGAGCACGTCGTCGAGGCTAACGGAGGTCTGATCGTCACTCGCTCTGTG
CAGTCCTGGCTGGAAGGGCGGCCAGAGCCCATCCTCAGCTCATCCTTGCC
GCCAAACGACCCCCGAATCTGGTTTGGGATCATGACGGAGGACGAGAAGA
TGGAGGCCCCTGGGAAGTGTGTGCAGGTCTCGGACATTGAAAACATGTAC
TCAGCTTGCAGCCCGGTCACCGCCCCCACCGACCCCACCACCCTGCTGTA
CTACAAGAAAGTGGCCAACACGTACCACACCGGCAAGAAACACCCGGACC
GTCTGGGAGCGATGGCGAAATACAAGGGCGACGATGTCGCCTGGGGTATC
TGGCCTCGGGGGAAAATTCCCATCCTGGGCGGGGCGGAAGCAGGGCAAGG
AAGCGTTGTGCAGTACGGCTACTCCGAGGGGGAGCAGTTCCCGCCCTTGA
ACCGCATTTTGCGCGCGACGGAGGCCTACGTGGGTCCTGGCCTGGTGGCG
GGGCTGGAGAAGACCTTCAACAGCCTCGCAGCGACCGGGAACGCCACCAC
AACCACGGCCTTGGCCGCCATGACGGAGGAAACGGTCGAGTCGCCCACAG
ACATGCTGGTGTTCATGTCGAACTTTGTCCTCCCCGTGCGGTTCCAATAC
CGTGGTCCCAGGGCACCGATCCAGGGGCTTACTGGCCTGCACCGCTTTGG
CCTCTCCCCCTTAAACTTCTCCCCTCGGCGACGCGACGCAGCCCTTTATT
CCATGGACGGACCCCGGGCACGCGAAGGTTTGTTGAACATGACGGATATC
AAAGGGGCGCCGTTTTTCCTGAGCCCTCCCCACTACTTGGGCTGTCCGAA
GCTGCAGTCCTTGGAATGCCTGAGCGCGGTCGCAACCATCCCCCAGGGGG
AGTCAGAGGCCGCGGTCGGAAGCCACTTGGACATCGAACCGTACACGGGC
AGGACCCTCTCTGCCTCCGTGAGCCTACAGGTCTCCTCCTCCACCATGGG
GGCTGCCCGCGTCTACGACGTTTTCCACGCAGAGACATACACGGCCGAGG
TGGTGCCCTTGCTCTGGATGACGCACCAGGCGGAGGTCGGGCCTGAGGAC
GCGGCGCTCTTCCAAGAGCTCGTGAATGCGCCCTTGGACTTTGTGACCAA
AGTGCAGAGGCTGACCCTGCTCGTGGGGATCCTAACGGCAGGCGTCGGGC
TCTTCCTCGCGTTGCTCGGCTTCTTTTGTTTGTGTAGGAAGAGTGGAAGG
GGGAGCAAGACAGAGAGCGACGCGCGTCGGGCGAGGGGGCACTTCATTTG
AGAATTTGGGGTGCAGGAAGGTGAATGAGGATGGAGGGTGGGAAGTGTGG
CGACGGCGGTAAGACCTCACTCCCCCCTGCGATGGGAGGGAGTAGCCTGA
CGCGCTTTTGAAGTGAGAGGCCAACCTTTTGAATGAGGGAGGGGGGCGTT
CGGAACGCCCTGTATGTCGCCGCAGGGAATGTAAAGAAAAAAAGGGAGGC
GTGTATGTGATCCATGTTTACGAGTCAAGGAGAGAATGGGGAGATGTTGT
GGAAGTGGAGCCGACAATTGATGAAAGAATGAATCGAAAGCATATCGGAA
GGA

protein sequence of rna5846

>rna5846-protein ID=rna5846-protein|Name=rna5846|organism=Nannochloropsis gaditana|type=polypeptide|length=429bp
MPLMGGRKQWGGWPARQCSVLSAYTNSPVRNHDIKHEMIGSDDEDEEARE
RASWTTVTSRKKGKGGKERGRRLSYGSQADTSSFHHQTHYSRDRDRALSS
PEDIAEEGSRLLVAVEAAKSCLASTTFFLNLENALLTRSTKKVADNEEEN
NTREIRSLVCYGLGSIQSTNSHALWQLACVCLIKDRLNVHLSPPRPSTTL
PSHPPSTSSSVCPLSPSSTSQVQYLTLPLVEAEMFDPVFDDVDSYLLNRL
GWRVIPHNEECKRPARVPTLFFMPCCHRRLYSNLLWANWSPESLKNVVVV
GNSLKSYQERAWALEEDLDPTDCVLPLLPWVREMPLSWRTRTGSGGTTGC
WPGMGREEEKGGPKGEARGMDDRVVKTAFVDMRVVDFVNLPPPVGEAGGS
EEKDVAKRSLWHRRPPEYRAGTASSKGGV

mRNA from alignment at CM002466.1:983104..984706-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5846 ID=rna5846|Name=rna5846|organism=Nannochloropsis gaditana|type=mRNA|length=1603bp|location=Sequence derived from alignment at CM002466.1:983104..984706- (Nannochloropsis gaditana)
CTCTCGTTTCATACGGCTTGCTTCGCGGTGCATCAACGGCCCGCAGATCT
GTCCCTTACATTTTCAGCATGCGGGTAGCTTATGCCTTTGATGGGAGGAA
GGAAGCAGTGGGGAGGTTGGCCTGCTCGACAATGTTCAGTACTTTCAGCG
TATACCAACTCACCAGTACGCAACCACGACATAAAGCATGAAATGATCGG
TAGTGATGACGAAGATGAGGAAGCCAGGGAACGCGCGTCATGGACGACCG
TCACGTCTCGCAAAAAAGGGAAGGGTGGCAAGGAACGGGGGAGACGACTT
TCTTATGGCAGCCAAGCGGACACGTCGTCCTTTCACCACCAGACCCACTA
TTCGAGGTAAAGCATGAGAAGAATAAATGGTGATATTATTTTCCTGCCGT
GTCTTTCAGCGTTCGATGCAGTTTTTATCCTACACCTGGTGCATCATGTC
GTCTCACCTCCGTTTTACGTGCGTAACCGTGTCCTAACTCTTTCGAAAGG
GACAGAGACAGGGCTTTAAGTTCACCCGAAGATATAGCAGAAGAGGGCTC
TCGCCTGCTGGTAGCTGTGGAAGCGGCGAAGTCTTGTCTCGCTTCAACGA
CCTTTTTCCTTAACCTTGAGAACGCCCTCTTGACTCGCAGCACAAAAAAA
GTCGCCGATAATGAAGAAGAAAACAACACCAGGGAGATCCGTTCCTTGGT
CTGCTACGGTCTTGGTAGCATTCAGAGCACGAACAGTCATGCATTGTGGC
AGCTGGCATGCGTCTGTTTGATCAAGGATCGGCTTAATGTTCATCTCTCC
CCGCCTAGGCCAAGCACCACTCTGCCCTCCCACCCCCCCTCGACCTCTTC
CAGCGTCTGCCCTCTCTCTCCTTCCTCAACATCCCAAGTTCAGTATCTTA
CATTGCCCTTGGTGGAGGCTGAGATGTTCGATCCAGTCTTCGACGATGTA
GACAGCTACCTTCTCAATCGTCTTGGCTGGCGCGTTATCCCGCACAACGA
GGAATGCAAACGGCCCGCGCGAGTCCCCACTCTCTTCTTCATGCCATGCT
GCCACCGTCGCCTGTATAGCAATCTGTTGTGGGCAAACTGGTCGCCGGAA
TCGTTGAAGAACGTGGTGGTGGTGGGGAATAGTCTGAAGAGCTACCAAGA
GCGGGCGTGGGCGCTGGAGGAGGACCTGGACCCTACCGATTGCGTGCTTC
CCCTCCTGCCCTGGGTGAGAGAGATGCCCCTCTCCTGGAGAACGAGGACA
GGGTCGGGTGGCACGACGGGATGCTGGCCAGGGATGGGGAGGGAGGAGGA
GAAGGGAGGGCCGAAGGGAGAGGCGCGGGGGATGGACGACAGGGTGGTCA
AGACGGCTTTTGTGGATATGCGTGTGGTCGACTTTGTGAATCTACCTCCA
CCTGTGGGAGAAGCAGGCGGAAGTGAGGAAAAGGACGTGGCGAAGAGAAG
CCTTTGGCACCGGCGCCCCCCCGAGTACCGTGCCGGGACAGCCTCCAGCA
AGGGGGGAGTATGACTTCAACCATGGGGAGGGCGTGTGCCTGAACGAGGA
GGTCGAGGGAAGGAGGTTCAACATGGGCTGAAAGTACTCTTTATCACCTG
GAA

Coding sequence (CDS) from alignment at CM002466.1:983104..984706-

>rna5846 ID=rna5846|Name=rna5846|organism=Nannochloropsis gaditana|type=CDS|length=2580bp|location=Sequence derived from alignment at CM002466.1:983104..984706- (Nannochloropsis gaditana)
GGACAGAGACAGGGCTTTAAGTTCACCCGAAGATATAGCAGAAGAGGGCT
CTCGCCTGCTGGTAGCTGTGGAAGCGGCGAAGTCTTGTCTCGCTTCAACG
ACCTTTTTCCTTAACCTTGAGAACGCCCTCTTGACTCGCAGCACAAAAAA
AGTCGCCGATAATGAAGAAGAAAACAACACCAGGGAGATCCGTTCCTTGG
TCTGCTACGGTCTTGGTAGCATTCAGAGCACGAACAGTCATGCATTGTGG
CAGCTGGCATGCGTCTGTTTGATCAAGGATCGGCTTAATGTTCATCTCTC
CCCGCCTAGGCCAAGCACCACTCTGCCCTCCCACCCCCCCTCGACCTCTT
CCAGCGTCTGCCCTCTCTCTCCTTCCTCAACATCCCAAGTTCAGTATCTT
ACATTGCCCTTGGTGGAGGCTGAGATGTTCGATCCAGTCTTCGACGATGT
AGACAGCTACCTTCTCAATCGTCTTGGCTGGCGCGTTATCCCGCACAACG
AGGAATGCAAACGGCCCGCGCGAGTCCCCACTCTCTTCTTCATGCCATGC
TGCCACCGTCGCCTGTATAGCAATCTGTTGTGGGCAAACTGGTCGCCGGA
ATCGTTGAAGAACGTGGTGGTGGTGGGGAATAGTCTGAAGAGCTACCAAG
AGCGGGCGTGGGCGCTGGAGGAGGACCTGGACCCTACCGATTGCGTGCTT
CCCCTCCTGCCCTGGGTGAGAGAGATGCCCCTCTCCTGGAGAACGAGGAC
AGGGTCGGGTGGCACGACGGGATGCTGGCCAGGGATGGGGAGGGAGGAGG
AGAAGGGAGGGCCGAAGGGAGAGGCGCGGGGGATGGACGACAGGGTGGTC
AAGACGGCTTTTGTGGATATGCGTGTGGTCGACTTTGTGAATCTACCTCC
ACCTGTGGGAGAAGCAGGCGGAAGTGAGGAAAAGGACGTGGCGAAGAGAA
GCCTTTGGCACCGGCGCCCCCCCGAGTACCGTGCCGGGACAGCCTCCAGC
AAGGGGGGAGTATGAATGCCTTTGATGGGAGGAAGGAAGCAGTGGGGAGG
TTGGCCTGCTCGACAATGTTCAGTACTTTCAGCGTATACCAACTCACCAG
TACGCAACCACGACATAAAGCATGAAATGATCGGTAGTGATGACGAAGAT
GAGGAAGCCAGGGAACGCGCGTCATGGACGACCGTCACGTCTCGCAAAAA
AGGGAAGGGTGGCAAGGAACGGGGGAGACGACTTTCTTATGGCAGCCAAG
CGGACACGTCGTCCTTTCACCACCAGACCCACTATTCGAGGGACAGAGAC
AGGGCTTTAAGTTCACCCGAAGATATAGCAGAAGAGGGCTCTCGCCTGCT
GGTAGCTGTGGAAGCGGCGAAGTCTTGTCTCGCTTCAACGACCTTTTTCC
TTAACCTTGAGAACGCCCTCTTGACTCGCAGCACAAAAAAAGTCGCCGAT
AATGAAGAAGAAAACAACACCAGGGAGATCCGTTCCTTGGTCTGCTACGG
TCTTGGTAGCATTCAGAGCACGAACAGTCATGCATTGTGGCAGCTGGCAT
GCGTCTGTTTGATCAAGGATCGGCTTAATGTTCATCTCTCCCCGCCTAGG
CCAAGCACCACTCTGCCCTCCCACCCCCCCTCGACCTCTTCCAGCGTCTG
CCCTCTCTCTCCTTCCTCAACATCCCAAGTTCAGTATCTTACATTGCCCT
TGGTGGAGGCTGAGATGTTCGATCCAGTCTTCGACGATGTAGACAGCTAC
CTTCTCAATCGTCTTGGCTGGCGCGTTATCCCGCACAACGAGGAATGCAA
ACGGCCCGCGCGAGTCCCCACTCTCTTCTTCATGCCATGCTGCCACCGTC
GCCTGTATAGCAATCTGTTGTGGGCAAACTGGTCGCCGGAATCGTTGAAG
AACGTGGTGGTGGTGGGGAATAGTCTGAAGAGCTACCAAGAGCGGGCGTG
GGCGCTGGAGGAGGACCTGGACCCTACCGATTGCGTGCTTCCCCTCCTGC
CCTGGGTGAGAGAGATGCCCCTCTCCTGGAGAACGAGGACAGGGTCGGGT
GGCACGACGGGATGCTGGCCAGGGATGGGGAGGGAGGAGGAGAAGGGAGG
GCCGAAGGGAGAGGCGCGGGGGATGGACGACAGGGTGGTCAAGACGGCTT
TTGTGGATATGCGTGTGGTCGACTTTGTGAATCTACCTCCACCTGTGGGA
GAAGCAGGCGGAAGTGAGGAAAAGGACGTGGCGAAGAGAAGCCTTTGGCA
CCGGCGCCCCCCCGAGTACCGTGCCGGGACAGCCTCCAGCAAGGGGGGAG
TATGAATGCCTTTGATGGGAGGAAGGAAGCAGTGGGGAGGTTGGCCTGCT
CGACAATGTTCAGTACTTTCAGCGTATACCAACTCACCAGTACGCAACCA
CGACATAAAGCATGAAATGATCGGTAGTGATGACGAAGATGAGGAAGCCA
GGGAACGCGCGTCATGGACGACCGTCACGTCTCGCAAAAAAGGGAAGGGT
GGCAAGGAACGGGGGAGACGACTTTCTTATGGCAGCCAAGCGGACACGTC
GTCCTTTCACCACCAGACCCACTATTCGAG

Synonyms

Publications