EWM24845.1, cds5831 (CDS) Nannochloropsis gaditana

Overview
NameEWM24845.1
Unique Namecds5831
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:984351..984625 -
Alignment locationCM002466.1:983193..984207 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24845.1
Productsensitivity to red light reduced protein
Orig transcript idgnl|cribi|Naga_100322g9.5906.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:984351..984625 -
CM002466.1supercontigCM002466.1:983193..984207 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR012942SRR1-like
Homology
BLAST of EWM24845.1 vs. NCBI_GenBank
Match: gi|585106445|gb|EWM24845.1| (sensitivity to red light reduced protein [Nannochloropsis gaditana])

HSP 1 Score: 885.174 bits (2286), Expect = 0.000e+0
Identity = 429/429 (100.00%), Postives = 429/429 (100.00%), Query Frame = 0
Query:    1 MPLMGGRKQWGGWPARQCSVLSAYTNSPVRNHDIKHEMIGSDDEDEEARERASWTTVTSRKKGKGGKERGRRLSYGSQADTSSFHHQTHYSRDRDRALSSPEDIAEEGSRLLVAVEAAKSCLASTTFFLNLENALLTRSTKKVADNEEENNTREIRSLVCYGLGSIQSTNSHALWQLACVCLIKDRLNVHLSPPRPSTTLPSHPPSTSSSVCPLSPSSTSQVQYLTLPLVEAEMFDPVFDDVDSYLLNRLGWRVIPHNEECKRPARVPTLFFMPCCHRRLYSNLLWANWSPESLKNVVVVGNSLKSYQERAWALEEDLDPTDCVLPLLPWVREMPLSWRTRTGSGGTTGCWPGMGREEEKGGPKGEARGMDDRVVKTAFVDMRVVDFVNLPPPVGEAGGSEEKDVAKRSLWHRRPPEYRAGTASSKGGV 429
            MPLMGGRKQWGGWPARQCSVLSAYTNSPVRNHDIKHEMIGSDDEDEEARERASWTTVTSRKKGKGGKERGRRLSYGSQADTSSFHHQTHYSRDRDRALSSPEDIAEEGSRLLVAVEAAKSCLASTTFFLNLENALLTRSTKKVADNEEENNTREIRSLVCYGLGSIQSTNSHALWQLACVCLIKDRLNVHLSPPRPSTTLPSHPPSTSSSVCPLSPSSTSQVQYLTLPLVEAEMFDPVFDDVDSYLLNRLGWRVIPHNEECKRPARVPTLFFMPCCHRRLYSNLLWANWSPESLKNVVVVGNSLKSYQERAWALEEDLDPTDCVLPLLPWVREMPLSWRTRTGSGGTTGCWPGMGREEEKGGPKGEARGMDDRVVKTAFVDMRVVDFVNLPPPVGEAGGSEEKDVAKRSLWHRRPPEYRAGTASSKGGV
Sbjct:    1 MPLMGGRKQWGGWPARQCSVLSAYTNSPVRNHDIKHEMIGSDDEDEEARERASWTTVTSRKKGKGGKERGRRLSYGSQADTSSFHHQTHYSRDRDRALSSPEDIAEEGSRLLVAVEAAKSCLASTTFFLNLENALLTRSTKKVADNEEENNTREIRSLVCYGLGSIQSTNSHALWQLACVCLIKDRLNVHLSPPRPSTTLPSHPPSTSSSVCPLSPSSTSQVQYLTLPLVEAEMFDPVFDDVDSYLLNRLGWRVIPHNEECKRPARVPTLFFMPCCHRRLYSNLLWANWSPESLKNVVVVGNSLKSYQERAWALEEDLDPTDCVLPLLPWVREMPLSWRTRTGSGGTTGCWPGMGREEEKGGPKGEARGMDDRVVKTAFVDMRVVDFVNLPPPVGEAGGSEEKDVAKRSLWHRRPPEYRAGTASSKGGV 429          
BLAST of EWM24845.1 vs. NCBI_GenBank
Match: gi|950900942|ref|XP_014530248.1| (biofilm pga synthesis protein [Blastocystis sp. subtype 4] >gi|902864859|gb|KNB46805.1| biofilm pga synthesis protein [Blastocystis sp. subtype 4])

HSP 1 Score: 113.62 bits (283), Expect = 1.810e-23
Identity = 64/184 (34.78%), Postives = 93/184 (50.54%), Query Frame = 0
Query:  154 EIRSLVCYGLGSIQSTNSHALWQLACVCLIKDRLNVHLSPPRPSTTLPSHPPSTSSSVCPLSPSSTSQVQYLTLPLVEAEMFDPVFDDVDSYLLNRLGWRVIPHNEECKRPARVPTLFFMPCCHRRLYSNLLWANWSPESLKNVVVVGNSLKSYQERAWALEEDLDPTDCVLPLLPWVREMPLS 337
            +I S++ YGLGS+   N  + +Q AC   +++ LN++ S                                        E++DP     D+ + + LG  VIPHNEE KR     TLFFMP C   LY+ L+W+NW  E +KN+VVVGNS   Y +   A E++ DPT+ + PLLP++ E P+S
Sbjct:   31 KIESMIAYGLGSVND-NLISQYQFACALALRNELNINAS---------------------------------------LEIYDPAMGREDAAIASELGCEVIPHNEEAKRVVLRKTLFFMPHCGFNLYNGLMWSNWG-EHMKNLVVVGNSFSQYAQLMTA-EQNKDPTNAIYPLLPYISEAPIS 172          
BLAST of EWM24845.1 vs. NCBI_GenBank
Match: gi|754345938|ref|XP_004364036.2| (SRR1-like protein [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 105.916 bits (263), Expect = 5.642e-22
Identity = 72/190 (37.89%), Postives = 94/190 (49.47%), Query Frame = 0
Query:  155 IRSLVCYGLGSIQSTNSHALWQLACVCLIKDRLNVHLSPPRPSTTLPSHPPSTSSSVCPLSPSSTSQVQYLTLPLVEAEMFDPVFDDVDSYLLNRLGWRVIPHNEECKRPARVPTLFFMPCCHRRLYSNLLWANWSPESLKNVVVVGNSLKSYQERA--WALEEDLDPTDCVLPLLPWVREMPL-SWRTR 341
            IR +VCYG+GS+ S +  A +Q A +CL    L  HL  P                                    +  +FDPVF   D   + +LG  +I  NEE KR A VPTLF+MP C  RLY+NLLWANWSP +L  V+++GN L  Y ER    + +  L     +  +LP VRE PL S+R R
Sbjct:  118 IREIVCYGIGSL-SDSVLARYQFA-LCL---ALQEHLKIPG-----------------------------------QVHVFDPVFTVQDIAAVQQLGGAIISENEEAKRKASVPTLFYMPHCGGRLYNNLLWANWSPAALARVLILGNPLSRYAERMSNASFQTAL---PYIAQVLPAVRETPLPSFRVR 264          
BLAST of EWM24845.1 vs. NCBI_GenBank
Match: gi|765551561|gb|KJE92182.1| (SRR1-like protein [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 101.293 bits (251), Expect = 1.543e-20
Identity = 54/114 (47.37%), Postives = 70/114 (61.40%), Query Frame = 0
Query:  231 EAEMFDPVFDDVDSYLLNRLGWRVIPHNEECKRPARVPTLFFMPCCHRRLYSNLLWANWSPESLKNVVVVGNSLKSYQERA--WALEEDLDPTDCVLPLLPWVREMPL-SWRTR 341
            +  +FDPVF   D   + +LG  +I  NEE KR A VPTLF+MP C  RLY+NLLWANWSP +L  V+++GN L  Y ER    + +  L     +  +LP VRE PL S+R R
Sbjct:  135 QVHVFDPVFTVQDIAAVQQLGGAIISENEEAKRKASVPTLFYMPHCGGRLYNNLLWANWSPAALARVLILGNPLSRYAERMSNASFQTAL---PYIAQVLPAVRETPLPSFRVR 245          
BLAST of EWM24845.1 vs. NCBI_GenBank
Match: gi|1032151737|gb|OAO15273.1| (Biotin--protein ligase [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 101.679 bits (252), Expect = 1.893e-19
Identity = 60/187 (32.09%), Postives = 92/187 (49.20%), Query Frame = 0
Query:  151 NTREIRSLVCYGLGSIQSTNSHALWQLACVCLIKDRLNVHLSPPRPSTTLPSHPPSTSSSVCPLSPSSTSQVQYLTLPLVEAEMFDPVFDDVDSYLLNRLGWRVIPHNEECKRPARVPTLFFMPCCHRRL-YSNLLWANWSPESLKNVVVVGNSLKSYQERAWALEEDLDPTDCVLPLLPWVREMPL 336
            N  +I S+V YGLGS+   N  + +Q AC   +++ L ++ S                                        E+FDP     D+ + + LG  VIPHNEE KR     TLFFMP C   L Y+ L+W+NW  +S++NV ++GNS  +Y E    + ++ + T+ + PL+P++RE PL
Sbjct:   28 NVGKIESMVAYGLGSVND-NLTSQYQFACALALRENLGINGS---------------------------------------IEIFDPAMGKEDAAIASELGCEVIPHNEEAKRVVLRKTLFFMPHCGFNLWYNGLMWSNWG-KSMRNVCLIGNSFNAYSESLSEMHKNSE-TNAITPLIPYIREFPL 172          
BLAST of EWM24845.1 vs. NCBI_GenBank
Match: gi|765551562|gb|KJE92183.1| (SRR1-like protein, variant [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 95.1301 bits (235), Expect = 2.046e-18
Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 0
Query:  231 EAEMFDPVFDDVDSYLLNRLGWRVIPHNEECKRPARVPTLFFMPCCHRRLYSNLLWANWSPESLKNVVVVGNSLKSYQER 310
            +  +FDPVF   D   + +LG  +I  NEE KR A VPTLF+MP C  RLY+NLLWANWSP +L  V+++GN L  Y ER
Sbjct:  135 QVHVFDPVFTVQDIAAVQQLGGAIISENEEAKRKASVPTLFYMPHCGGRLYNNLLWANWSPAALARVLILGNPLSRYAER 214          
BLAST of EWM24845.1 vs. NCBI_GenBank
Match: gi|567983554|gb|ETL33944.1| (hypothetical protein L916_13713 [Phytophthora parasitica])

HSP 1 Score: 91.6633 bits (226), Expect = 6.365e-17
Identity = 62/204 (30.39%), Postives = 102/204 (50.00%), Query Frame = 0
Query:  139 STKKVADNEEEN-NTREIR----SLVCYGLGSIQSTNSHALWQLACVCLIKDRLNVHLSPPRPSTTLPSHPPSTSSSVCPLSPSSTSQVQYLTLPLVEAEMFDPVFDDVDSYLLNRLGWRVIPHNEECKRPARVPTLFFMPCCHRRLYSNLLWANWSPESLKNVVVVGNSLKSYQERAWALEEDLDPTDCVLPLLPWVREMPLS 337
            + KK  D + E  +T E+     +LV YGLGS  ++ S+AL QL  +  +++ L   L                      L+  S+  +Q+       AE+FDP  +  D+ +      ++I  NE  +R     T+FFMP C + LY N+L  NW P ++KN+V++GNS  +Y +R    +E  +    ++ +LP+V E+PLS
Sbjct:   88 TVKKSVDKDVEGVDTEEVTDHSPTLVGYGLGSFCAS-SNALHQLGFLVALRESLESRLRKSNGDV---------------LAVESSDTIQHC------AEIFDPAMNKSDAVIAEHFQLKIILENEHGRRQVDSNTVFFMPHCGKTLYQNVLACNWGP-AIKNLVIIGNSFSAYGDRVLGSKERDEL--LLVSVLPYVDEVPLS 266          
BLAST of EWM24845.1 vs. NCBI_GenBank
Match: gi|390345817|ref|XP_003726417.1| (PREDICTED: SRR1-like protein [Strongylocentrotus purpuratus])

HSP 1 Score: 88.9669 bits (219), Expect = 1.533e-16
Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 0
Query:  234 MFDPVFDDVDSYLLNRLGWRVIPHNEECKRPARVPTLFFMPCCHRRLYSNLLWANWSPESLKNVVVVGNSLKSYQERAWA--LEEDLDPTDCVLP 326
            ++DP F DV+  +L +LG+ +I  NEE KR    PTLFFMP C + LY+NLLWANW  + L N++++GNS  ++ ER  A  L+E++     ++P
Sbjct:   92 LYDPNFSDVEKQVLEKLGYSLIDKNEEGKRQVTEPTLFFMPHCGKPLYNNLLWANWG-QRLSNLIILGNSFNNFSERFTARQLKEEVPYIHKIIP 185          
BLAST of EWM24845.1 vs. NCBI_GenBank
Match: gi|260782072|ref|XP_002586116.1| (hypothetical protein BRAFLDRAFT_255349 [Branchiostoma floridae] >gi|229271207|gb|EEN42127.1| hypothetical protein BRAFLDRAFT_255349, partial [Branchiostoma floridae])

HSP 1 Score: 85.1149 bits (209), Expect = 1.737e-16
Identity = 51/152 (33.55%), Postives = 75/152 (49.34%), Query Frame = 0
Query:  159 VCYGLGSIQSTNSHALWQLACVCLIKDRLNVHLSPPRPSTTLPSHPPSTSSSVCPLSPSSTSQVQYLTLPLVEAEMFDPVFDDVDSYLLNRLGWRVIPHNEECKRPARVPTLFFMPCCHRRLYSNLLWANWSPESLKNVVVVGNSLKSYQER 310
            VCYGLG   S  + A +QL  + +++D L V      P +                                   ++DP+F   +  LL +LG+++I  NEE KRP    TLF+MP C + LY+NLLW+NW P+ L N+V++GNSL +   R
Sbjct:    1 VCYGLGRFSSCVT-ARYQLGFLLMLRDVLKV------PGSCF---------------------------------VYDPLFSPSEKQLLEKLGFQLIQKNEEGKRPVNKRTLFYMPHCGKPLYNNLLWSNWGPQ-LSNLVILGNSLSNMALR 111          
BLAST of EWM24845.1 vs. NCBI_GenBank
Match: gi|1176117261|ref|XP_020629791.1| (SRR1-like protein isoform X1 [Orbicella faveolata])

HSP 1 Score: 89.7373 bits (221), Expect = 1.854e-16
Identity = 68/249 (27.31%), Postives = 112/249 (44.98%), Query Frame = 0
Query:   96 RALSSPEDIAEEGSRLLVAVEAAKSCLASTTFFLNLE----NALLTRSTKKVADNEEENN----TREIRSLVCYGLGSIQSTNSHALWQLACVCLIKDRLNVHLSPPRPSTTLPSHPPSTSSSVCPLSPSSTSQVQYLTLPLVEAEMFDPVFDDVDSYLLNRLGWRVIPHNEECKRPARVPTLFFMPCCHRRLYSNLLWANWSPESLKNVVVVGNSLKSYQERAWALEEDLDPTDCVLPLLPWVREMPL 336
            ++ +S E I  + + L   +E  ++ ++ + FF ++     N     +T  VA++E  N           +VCYG+G + S    A +Q A + L+K+ L +                                         +  +++P F   D  L+   G  +I HNEE KR     TLFFM  C + LY+++LWANW P  L NVV++GN L SYQER  + +   + T  +  +LP++ E P+
Sbjct:   32 KSRTSSETITCDANELRTKIEKCRAEVSGSDFFTSVRELFYNGYCVDNTSNVAESERPNTKVIPQEPFTDIVCYGIGKLTSC-PIARYQFAFLLLLKEFLQI---------------------------------------AGQCFIYEPQFSKDDKSLVGDFGCSLIEHNEEGKRKVDSSTLFFMLHCGKPLYNSVLWANWGP-GLSNVVILGNRLTSYQERLPSRQLRTE-TPYIYNILPYMMETPI 238          
The following BLAST results are available for this feature:
BLAST of EWM24845.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106445|gb|EWM24845.1|0.000e+0100.00sensitivity to red light reduced protein [Nannochl... [more]
gi|950900942|ref|XP_014530248.1|1.810e-2334.78biofilm pga synthesis protein [Blastocystis sp. su... [more]
gi|754345938|ref|XP_004364036.2|5.642e-2237.89SRR1-like protein [Capsaspora owczarzaki ATCC 3086... [more]
gi|765551561|gb|KJE92182.1|1.543e-2047.37SRR1-like protein [Capsaspora owczarzaki ATCC 3086... [more]
gi|1032151737|gb|OAO15273.1|1.893e-1932.09Biotin--protein ligase [Blastocystis sp. ATCC 5017... [more]
gi|765551562|gb|KJE92183.1|2.046e-1853.75SRR1-like protein, variant [Capsaspora owczarzaki ... [more]
gi|567983554|gb|ETL33944.1|6.365e-1730.39hypothetical protein L916_13713 [Phytophthora para... [more]
gi|390345817|ref|XP_003726417.1|1.533e-1644.21PREDICTED: SRR1-like protein [Strongylocentrotus p... [more]
gi|260782072|ref|XP_002586116.1|1.737e-1633.55hypothetical protein BRAFLDRAFT_255349 [Branchiost... [more]
gi|1176117261|ref|XP_020629791.1|1.854e-1627.31SRR1-like protein isoform X1 [Orbicella faveolata][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5846rna5846Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications