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Properties
| Property Name | Value |
|---|
| Product | scavenger receptor class member 2 |
| Orig transcript id | gnl|cribi|Naga_100322g7.5903.mrna |
| Orig protein id | gnl|cribi|Naga_100322g7.5903 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:978748..980164 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5844 ID=rna5844|Name=rna5844|organism=Nannochloropsis gaditana|type=mRNA|length=4304bp
AGGGCTGTCACACGACAAATCACGAAATTGGATGCTTGCTTTTATTACTT
TTGTGTCGTTCACAAATATTTAAGGCTTTGAAGATTTAATCGCATAGTGC
ATAATATAGATATAACAATTTACCACTCCTCCACCCCCTTGACGCATCCC
CCTACTCCTCGCTTTTCCCCCTGTTCTCTCGCGCAACTCCTGCTCTCGAC
AGGAAGCGGACGCCTTTAATTGCATTTTTACGTTCTGTCTGTTTTTCCCT
TGTCAAGTTGAAAATGAATTTGTCTTTTCCGATACTTCTCTCTGCGGAAA
ATTTCAATGAGTGCTATCTCGTCCATTCTTTGCCGCTTGAGCTTTCGCGT
TGAAGCCCATCACGGGATGCAGAGACGCGTGCCAAGCAACCGGCGCAAGA
TGCTCCCAAATTAAAAGGAACAATGAGGCGATACCATGATAACTTCAGTG
GTGTTCTTCTTGCCAATTGCAAGGAAAGAATGTCAGGAACGCTTGCAGAC
TTTTCATGGAAAGAGGAACTTGAAAAGCAAGTAAGATAACAAACCAGCCT
ACAGGTCCCCACTTTGGAAAGTGAAATGACGGATTCATATGCACCGCAGT
GCACTGCAATGGGTTTGGCTTCTCTTCTTCGCATGCCTGCCACCGCACAG
TTGTTCGAGTACACACAGTCCTTCAAATATAGTGCCGCCCCAATACCAGA
CGCCTCCCACTTCCTCAAGCTCAAAGCACGCATATGTCTGCCTTCACCGC
CCTTGATAACCCCCGTCCTGCACGTGGAATGAGGCGCATGTCTGCATCAC
TTGTAAGGCCCATAGGTGAGGCCTCGTCGCTCCATCTCGCGGGCAGAATA
GGGTAAGCGGGGCTGCGGCTGATAGAAAAAGCGGGTCGGATAGCATAAGG
GCCCCTCGTACTTGTCGGGCACGTAGAAGGTGTAGGGTTTCCCGTAGTAA
TCGCGGACCCGCACAGCCGGTATCCGGGGCGGTCGCTGCTGAGGAGGGCT
TGTAGATTTCTTTCGAGCACTCTTGCGTTGACTACGCTTGCTTTCAACAC
TCCCATGGCTTTGGTTACTTGTGCGGCTGCTTCCGCTCTTGTCGAGGCTC
TTGCCGGACATCCCCGACTGCGGTGTGGCCTCCTTGGTTGGCCGTTCCTC
TTCGCTGTGAGTGTTTAGGTCCACAGGGCTCTTGACCTGCTGCTCATTAT
CGGAGGGGCGCCCCGTTGGAGGGGAAGAGGGTGGTGGGATGGCCTCGGGA
TGCACGCTGGCACCGGCAGCCTCTGTCTCGTGTTGGGTGAGGGGTGTAGG
ACCAGCTGGCAAAGCCAGAGCCGGGTCGTCTGTAGGTGCCTTCTGGCCTT
GAAGCGCGGGCTCAAGGGAGGGCACCGCTTGGGGTGGAGAGGAGGGAAGA
GTCCCCGTGAAACTTGGCGTTGCATGCGGGTAGTGCGGTTGCTGCGGGTA
TGGATGCTGGTGGTAGTATGGGAGGGGCAGGGGGGGGGAGACGGGAGGAG
TGAAAGGATGGTGAGGCGGCTGCAGCATAGGAGGCAATCCAGGGGGCGTG
TAGTGATAAATCTCCTGTGGATACATCGCATGTTGCTGCTCGAAATTGAA
TGGCATGGGGGGCGTGTGAGGAGGAGTGAAAGGATGAAGAGGCGGCTGCA
GCAGAGGAGGAGATCCAGGGGGTGCGTATTGCGGATAGGATTCCGGCGAG
GGCTGCCGCTCGTATGACGCTGGTGTCTGCGTATGGTAGTATGGGACAGG
CTGGGGCTGCGACTGCGGCAGGTCGTCGGGGTAGGTGTAATAGACAGCGC
CGTCTCGGTACTCGGACAGGATCGGGGCCGGCGGGGGAATGTAAGTGCCC
ACTTCCTGTGCCTCTTTGGTGGCCCCAGCGCCCTCCGATGGGCCCATGGC
CTCTCCGTGGCTTTCCTTCTCCGCTCCCTCTTGCGCCCTACCCGCCATAT
CGGCGTTTTCTGCAAGTGCACCGTCCACAGGGACATCATCGTCCAAGGGT
TCCTTCTTCGCCGTGCCATGTGCCACGCCCTGTGTGTCGCCGATCTCCCC
AGGCTCTCCCTGCACGGGAATGCGACCCTCTTCGGGCTCGGGCGTCAATG
CACCTGCCATGTTGGAGCCCTCAGTGTCGATGGAAGCAGAGAATTCAAGG
GACTCATCCCCCAGGATGTTTTGATCAGCTTGGAGCGGCGGTGTGGAAGA
AGGGGGCTGGGGATGGCATGCTGGCGCGGGCGGGGACTTGAAGTCCACAG
GCGGGGGGGAAGGGTTCAAGAAATGAACCGGAGGAGCGGGTGAAAAGGCC
AATGTGCCGTATCCACCCGTCACAGGAGGAGGAAGTGGAGAATGATAAGG
CGGAGGCAGAGGGTGAGGCTCGACACTCACCGGGTACGGGAGGTACGTCA
CACTGGTGCCCTCCGCGGCGCCTTCAAAGCCGTAGCCACCCGCCAATGAA
GCCTCACCAAGGCTGTGGGGAGAGCCGTGGCCAGGATGATGGACCCGCCG
GCCGTCCAGAGCGGCGCGCGGGTGTCGTGGGTGGGGCACACGGTGCCCGT
GCTTGCGCTGCCCAGCCAGGGATCCGCCGGGCTGCGATCCAGTCTGAGGT
CGGTACTGACGACGGATGTGTTGGTGGCCCTGTCGAGGAGGGTAGCTTTG
GTGGGAGGGCGGTGGAAAGGTGTGGCTGCGCACGTGATGTTGCGGATGCC
CTCGAGACAGGTCAGGGTAAGGCTTGTGGAATGTGGGGTCTTGGAAGAAG
TGCTGCTGGAATTGATGCGGCTGTTGCTGCATGTGGTAATGACTCTCTCG
TCCTTGCTGCTCCTGGTTCCAATAGCGTTGTTGCTGATGGTGTCCCTGTG
GCTCCCGATGATTGAATTGCGATAAATGCTGTTGGTAAGCGGAGGACTCC
GGCCATAGAGAGGGACGCCCTAATGCTTGCAGCGGGGAGAGATGCCCCTG
CGCCGGCGCTTGATGGAAAGAGCCATGCCTCGTGGGCGATCGCGCCCAAA
AAAGCTTCGAGGGCTGAGGCGACTGCAGCAGATGGTGCTGATTGAGTGGC
TCGATGGGGACCTGGACAGGAGCCAAGGCGGCTTCAGTAGGAGAGTCTTT
AGTGCTGGCGGGGGAGGATCCCCCTGGCAAAGAGGAGGGCTGCGGCTCAG
AGCAATGCTTTGGGACCGCCAAAAGGGATCGTTTCAAAAGTGCCTGCTCG
CGTGCCAGATTTTTCTGCTCCAGGATTGAAGGGTCTAGCTCTTGGCGGCG
GAGCGCTGCCAGGCGTCGTCGTGCGGCCCCTGACAAGCGTTTGCGTGACA
TGGGAGCCGGTGTCGGTTGGGTGGAAAATTGGTTTGGCGTTGTTCTGTTT
CAAGCAGATGAAGACAGAAAATAAGTATGAGGCGACGCAAAAGAAACCCG
CGATATACAGGTGAGACGTAGTGTGTGCGTGAAAGCGCAAACAGTATTTA
GGTCCAGGGGAATGGAGGGGCATGTATTATTATGGGACGTCAAAGACAGT
AGAGAACCCATGCGTCATTTTCCAACGTACGAGAGATGGAGACACCTACC
ATATGTGAATATCTAATAAGCCTACCCTCGTCATCTTACCTCGATGAGGC
CAAGTCTCATTTTTGACACGGAGAGGCTTGAACCTCGTGACATACGTTTG
CAACAACAATTGTGACATGGCAAAGGGCTTCAAAACGTCAGGCCGCAACG
AACGGCGTCCTGCGGGAGAGAAGTAGGGATGGGGCAAGGAACGGTAAAAG
GACGGGCGAGAGAACGACAGGGTCTATAGCCCCTGGTAAGAGCTGTGGAC
CTGGTCCGAGGCCAGGCAGGGTGGCGGTCTCCCGCATATTAGAATATTTG
CGAGCCATAAACTACATAATTCTGATCTAGAATAAATCTCACACACCAAA
CGACGTGTGTTTATGTGGTTTGTTTCATTACCGTCAATCGTGTGGAAGCA
GCTCGATTGTTTCAAACAGTGAAACGTTCTTTCAAAGCTGGTGGATCGAT
TTCCCCCCTCCCAAGGACTACTTTGCAGAAAGTGCAAATAGATTGGATAT
TTTGGTAAAAACTCATGCGTAAGTACTAGTACATTGATCGTTCAACTATT
AAAATTCGCTTTAAGAAAAGAAAAAGGCTCGCCAAAGCCTCCCCTGAGGG
ACAGTCACCTTTCCTTGAAGAAGAACCAGGCCTATCACAAACCTGTGTGC
CTTGTGAGGCATGCGCTAGGAATTGCAAAATATTCACAGAGCCCAGATAA
TGTACATTCGTGCTATGATCATGGCATTTCATGCTCTGCTTCAAATCATA
TAGG back to topprotein sequence of rna5844 >rna5844-protein ID=rna5844-protein|Name=rna5844|organism=Nannochloropsis gaditana|type=polypeptide|length=424bp
MASGHSEADEAWQKPEESRRQQDEILARALTLPPDDDSQMGADDMSSGIR
GHREDSIASDTSSLDPSDSARGYRHASSSDIEAAMSERPSTMSYSSSMTS
SAAYPPTPISYPAAAMAGTAPLRDRSESRLSATTTPPPSRRVTVSRWTRN
IGLLLLAIGLVALGSAIVSHTYLPEWRDKRALESLVVDSPDHPNYAAWVN
HASPSSAGRGEGDSPTYQRFYFFHLVNSKGFLQGKKPFYLEKGPYTFRQT
KKKVDVNFSEKGTLVSYVTLVQNKYSPEQSGKDVALSDTVTMLNLAYATA
VATFGSESNLLRYGSRRALMEIERAWESTFLPTLKERAVAATAVKTLALI
DEALTKLNYQEDGTAIRWGGGCASAGMVQQCGFEKAAFLKAMIGKERKED
AELYHMCLDTGLGSEPGQVGRAMI back to topmRNA from alignment at CM002466.1:978748..980164+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5844 ID=rna5844|Name=rna5844|organism=Nannochloropsis gaditana|type=mRNA|length=1417bp|location=Sequence derived from alignment at CM002466.1:978748..980164+ (Nannochloropsis gaditana)
GTGCCGACCTATCGACTGAGACCGACATGGCATCGGGACATTCAGAAGCA
GACGAGGCATGGCAAAAGCCAGAAGAATCACGACGACAGCAAGACGAAAT
CCTTGCTCGAGCACTGACACTCCCTCCGGACGATGACAGCCAAATGGGAG
CTGACGATATGTCGAGCGGAATAAGGGGTCACAGAGAAGACTCTATTGCC
AGCGACACATCCAGCTTAGACCCAAGCGACAGCGCGCGAGGCTATAGACA
TGCTTCGAGCAGTGATATTGAAGCTGCTATGAGTGAGAGACCCTCTACCA
TGTCCTATTCTTCCTCCATGACGTCATCGGCAGCGTACCCTCCGACCCCA
ATCTCCTATCCGGCTGCTGCCATGGCTGGAACTGCTCCGCTGCGGGACAG
GTCTGAATCGCGTCTCTCAGCCACTacgacccctcccccttctcgaAGGG
TCACGGTGTCGCGGTGGACCCGAAACATTGGCTTGCTGTTATTGGCGATC
GGGTTGGTGGCGCTCGGTTCTGCGATCGTCAGCCACACCTACCTCCCTGA
ATGGCGCGACAAGAGGGCTTTAGAATCATTAGTGGTCGATTCACCAGATC
ACCCCAACTATGCAGCATGGGTCAATcatgcttccccctcttcagctggc
cgaggagaaggtgatTCGCCTACCTACCAGCGCTTCTATTTTTTCCATCT
TGTGAATTCCAAAGGGTTTCTGCAGGGGAAGAAACCTTTCTATCTGGAGA
AAGGGCCCTACACGTTTCGGCAGACTAAGAAAAAAGTGGACGTCAATTTT
TCGGAGAAAGGGACGTTGGTGTCGTACGTGACACTCGTTCAAAACAAGTA
CAGCCCGGTAAGCTAGagtgcccttcctcttcccctttctccctccactc
ccgtGTCTTCCTTAACAACATTTGACCCCTACCCGCCCGATCTAACAGGA
ACAATCTGGGAAGGACGTGGCCCTCTCGGACACCGTGACCATGCTGAATC
TCGCCTACGCGACCGCCGTCGCTACGTTCGGGAGCGAGTCGAATCTCCTC
CGTTACGGATCCCGGCGGGCCCTGATGGAAATTGAACGTGCATGGGAGTC
GACTTTCCTCCCGACTCTGAAAGAACGGGCAGTGGCAGCCACCGCCGTCA
AGACCTTGGCCTTGATCGACGAAGCGCTGACCAAATTGAACTATCAGGAA
GACGGGACGGCGAttcgatggggagggggatgcgCAAGCGCGGGCATGGT
GCAACAATGTGGCTTCGAAAAGGCGGCCTTCTTAAAGGCAATGATTGGGA
AAGAGCgcaaggaggacgcagagctGTATCATATGTGCCTTGACACAGGG
CTGGGGTCGGAGCCGGGCCAGGTAGGGCGAGCGATGATTTAAAGGGGGGG
CACGTCGGGGATACAGC back to topCoding sequence (CDS) from alignment at CM002466.1:978748..980164+ >rna5844 ID=rna5844|Name=rna5844|organism=Nannochloropsis gaditana|type=CDS|length=2550bp|location=Sequence derived from alignment at CM002466.1:978748..980164+ (Nannochloropsis gaditana)
ATGGCATCGGGACATTCAGAAGCAGACGAGGCATGGCAAAAGCCAGAAGA
ATCACGACGACAGCAAGACGAAATCCTTGCTCGAGCACTGACACTCCCTC
CGGACGATGACAGCCAAATGGGAGCTGACGATATGTCGAGCGGAATAAGG
GGTCACAGAGAAGACTCTATTGCCAGCGACACATCCAGCTTAGACCCAAG
CGACAGCGCGCGAGGCTATAGACATGCTTCGAGCAGTGATATTGAAGCTG
CTATGAGTGAGAGACCCTCTACCATGTCCTATTCTTCCTCCATGACGTCA
TCGGCAGCGTACCCTCCGACCCCAATCTCCTATCCGGCTGCTGCCATGGC
TGGAACTGCTCCGCTGCGGGACAGGTCTGAATCGCGTCTCTCAGCCACTa
cgacccctcccccttctcgaAGGGTCACGGTGTCGCGGTGGACCCGAAAC
ATTGGCTTGCTGTTATTGGCGATCGGGTTGGTGGCGCTCGGTTCTGCGAT
CGTCAGCCACACCTACCTCCCTGAATGGCGCGACAAGAGGGCTTTAGAAT
CATTAGTGGTCGATTCACCAGATCACCCCAACTATGCAGCATGGGTCAAT
catgcttccccctcttcagctggccgaggagaaggtgatTCGCCTACCTA
CCAGCGCTTCTATTTTTTCCATCTTGTGAATTCCAAAGGGTTTCTGCAGG
GGAAGAAACCTTTCTATCTGGAGAAAGGGCCCTACACGTTTCGGCAGACT
AAGAAAAAAGTGGACGTCAATTTTTCGGAGAAAGGGACGTTGGTGTCGTA
CGTGACACTCGTTCAAAACAAGTACAGCCCGGAACAATCTGGGAAGGACG
TGGCCCTCTCGGACACCGTGACCATGCTGAATCTCGCCTACGCGACCGCC
GTCGCTACGTTCGGGAGCGAGTCGAATCTCCTCCGTTACGGATCCCGGCG
GGCCCTGATGGAAATTGAACGTGCATGGGAGTCGACTTTCCTCCCGACTC
TGAAAGAACGGGCAGTGGCAGCCACCGCCGTCAAGACCTTGGCCTTGATC
GACGAAGCGCTGACCAAATTGAACTATCAGGAAGACGGGACGGCGAttcg
atggggagggggatgcgCAAGCGCGGGCATGGTGCAACAATGTGGCTTCG
AAAAGGCGGCCTTCTTAAAGGCAATGATTGGGAAAGAGCgcaaggaggac
gcagagctGTATCATATGTGCCTTGACACAGGGCTGGGGTCGGAGCCGGG
CCAGGTAGGGCGAGCGATGATTTAAATGGCATCGGGACATTCAGAAGCAG
ACGAGGCATGGCAAAAGCCAGAAGAATCACGACGACAGCAAGACGAAATC
CTTGCTCGAGCACTGACACTCCCTCCGGACGATGACAGCCAAATGGGAGC
TGACGATATGTCGAGCGGAATAAGGGGTCACAGAGAAGACTCTATTGCCA
GCGACACATCCAGCTTAGACCCAAGCGACAGCGCGCGAGGCTATAGACAT
GCTTCGAGCAGTGATATTGAAGCTGCTATGAGTGAGAGACCCTCTACCAT
GTCCTATTCTTCCTCCATGACGTCATCGGCAGCGTACCCTCCGACCCCAA
TCTCCTATCCGGCTGCTGCCATGGCTGGAACTGCTCCGCTGCGGGACAGG
TCTGAATCGCGTCTCTCAGCCACTacgacccctcccccttctcgaAGGGT
CACGGTGTCGCGGTGGACCCGAAACATTGGCTTGCTGTTATTGGCGATCG
GGTTGGTGGCGCTCGGTTCTGCGATCGTCAGCCACACCTACCTCCCTGAA
TGGCGCGACAAGAGGGCTTTAGAATCATTAGTGGTCGATTCACCAGATCA
CCCCAACTATGCAGCATGGGTCAATcatgcttccccctcttcagctggcc
gaggagaaggtgatTCGCCTACCTACCAGCGCTTCTATTTTTTCCATCTT
GTGAATTCCAAAGGGTTTCTGCAGGGGAAGAAACCTTTCTATCTGGAGAA
AGGGCCCTACACGTTTCGGCAGACTAAGAAAAAAGTGGACGTCAATTTTT
CGGAGAAAGGGACGTTGGTGTCGTACGTGACACTCGTTCAAAACAAGTAC
AGCCCGGAACAATCTGGGAAGGACGTGGCCCTCTCGGACACCGTGACCAT
GCTGAATCTCGCCTACGCGACCGCCGTCGCTACGTTCGGGAGCGAGTCGA
ATCTCCTCCGTTACGGATCCCGGCGGGCCCTGATGGAAATTGAACGTGCA
TGGGAGTCGACTTTCCTCCCGACTCTGAAAGAACGGGCAGTGGCAGCCAC
CGCCGTCAAGACCTTGGCCTTGATCGACGAAGCGCTGACCAAATTGAACT
ATCAGGAAGACGGGACGGCGAttcgatggggagggggatgcgCAAGCGCG
GGCATGGTGCAACAATGTGGCTTCGAAAAGGCGGCCTTCTTAAAGGCAAT
GATTGGGAAAGAGCgcaaggaggacgcagagctGTATCATATGTGCCTTG
ACACAGGGCTGGGGTCGGAGCCGGGCCAGGTAGGGCGAGCGATGATTTAA back to top
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