EWM24842.1, cds5829 (CDS) Nannochloropsis gaditana

Overview
NameEWM24842.1
Unique Namecds5829
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:978774..979604 +
Alignment locationCM002466.1:979696..980139 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24842.1
Productscavenger receptor class member 2
Orig transcript idgnl|cribi|Naga_100322g7.5903.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:978774..979604 +
CM002466.1supercontigCM002466.1:979696..980139 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0007155cell adhesion
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR002159CD36
Homology
BLAST of EWM24842.1 vs. NCBI_GenBank
Match: gi|585106442|gb|EWM24842.1| (scavenger receptor class member 2 [Nannochloropsis gaditana])

HSP 1 Score: 875.544 bits (2261), Expect = 0.000e+0
Identity = 424/424 (100.00%), Postives = 424/424 (100.00%), Query Frame = 0
Query:    1 MASGHSEADEAWQKPEESRRQQDEILARALTLPPDDDSQMGADDMSSGIRGHREDSIASDTSSLDPSDSARGYRHASSSDIEAAMSERPSTMSYSSSMTSSAAYPPTPISYPAAAMAGTAPLRDRSESRLSATTTPPPSRRVTVSRWTRNIGLLLLAIGLVALGSAIVSHTYLPEWRDKRALESLVVDSPDHPNYAAWVNHASPSSAGRGEGDSPTYQRFYFFHLVNSKGFLQGKKPFYLEKGPYTFRQTKKKVDVNFSEKGTLVSYVTLVQNKYSPEQSGKDVALSDTVTMLNLAYATAVATFGSESNLLRYGSRRALMEIERAWESTFLPTLKERAVAATAVKTLALIDEALTKLNYQEDGTAIRWGGGCASAGMVQQCGFEKAAFLKAMIGKERKEDAELYHMCLDTGLGSEPGQVGRAMI 424
            MASGHSEADEAWQKPEESRRQQDEILARALTLPPDDDSQMGADDMSSGIRGHREDSIASDTSSLDPSDSARGYRHASSSDIEAAMSERPSTMSYSSSMTSSAAYPPTPISYPAAAMAGTAPLRDRSESRLSATTTPPPSRRVTVSRWTRNIGLLLLAIGLVALGSAIVSHTYLPEWRDKRALESLVVDSPDHPNYAAWVNHASPSSAGRGEGDSPTYQRFYFFHLVNSKGFLQGKKPFYLEKGPYTFRQTKKKVDVNFSEKGTLVSYVTLVQNKYSPEQSGKDVALSDTVTMLNLAYATAVATFGSESNLLRYGSRRALMEIERAWESTFLPTLKERAVAATAVKTLALIDEALTKLNYQEDGTAIRWGGGCASAGMVQQCGFEKAAFLKAMIGKERKEDAELYHMCLDTGLGSEPGQVGRAMI
Sbjct:    1 MASGHSEADEAWQKPEESRRQQDEILARALTLPPDDDSQMGADDMSSGIRGHREDSIASDTSSLDPSDSARGYRHASSSDIEAAMSERPSTMSYSSSMTSSAAYPPTPISYPAAAMAGTAPLRDRSESRLSATTTPPPSRRVTVSRWTRNIGLLLLAIGLVALGSAIVSHTYLPEWRDKRALESLVVDSPDHPNYAAWVNHASPSSAGRGEGDSPTYQRFYFFHLVNSKGFLQGKKPFYLEKGPYTFRQTKKKVDVNFSEKGTLVSYVTLVQNKYSPEQSGKDVALSDTVTMLNLAYATAVATFGSESNLLRYGSRRALMEIERAWESTFLPTLKERAVAATAVKTLALIDEALTKLNYQEDGTAIRWGGGCASAGMVQQCGFEKAAFLKAMIGKERKEDAELYHMCLDTGLGSEPGQVGRAMI 424          
BLAST of EWM24842.1 vs. NCBI_GenBank
Match: gi|585104049|gb|EWM23168.1| (uncharacterized protein Naga_100043g43 [Nannochloropsis gaditana])

HSP 1 Score: 174.096 bits (440), Expect = 9.202e-44
Identity = 101/307 (32.90%), Postives = 161/307 (52.44%), Query Frame = 0
Query:  128 SRLSATTTPPPSRRVTVSRWTRNI--------GLLLLAIGLVALGSAIVSHTYLPEWRDKRALESLVVDSPDHPNYAAWVNHASPSSAGRGEGDSPTYQRFYFFHLVNSKGFLQGKKPFYLEKGPYTFRQTKKKVDVNFSEKGTLVSYVTLVQNKYS--PEQSGKDVALSDTVTMLNLAYATAVATFGSESNLLRYGSRRALMEIERAWESTFLPTLKERAVAATAVKTLALIDEALTKLNYQEDGTAIRWGGGCASAGMVQQCGFEKAAFLKAMIGKERKEDAELYHMCLDTGLGSEPGQVGRAMI 424
            +R+S  T PP  RR  V  W +          G  L   GL+ +  A V       +R  +  E++VVD+P+HP + AW   A        +  +P +  ++ +++ N + FL G+ P   E GP++F+Q  KK++V FS++G LVSY+T +Q++++  PE+  +      +V  LNL Y+ A+ T GSESNLL+ GS++ L E+    ++ FLP LKE AV       +  + + L  +    + TA RWGGGC S    + CGF   A   + + K  K D  L  +C++T L +E  Q+  A +
Sbjct:  227 ARVSMDTVPP--RRSLVRSWLQTAWASRQCRRGFGLFVAGLLLMALAGVVDIEGNAYRHAKIREAIVVDAPNHPEFKAWATGA--------QQKTPLFYTYHLYNITNPEEFLAGQPPQVHEVGPFSFQQRTKKINVTFSDEGRLVSYITQIQHEFTGDPEELDRQ-----SVYSLNLPYSVAIYTAGSESNLLKIGSQQGLAEVLFQMKTYFLPALKENAVVMAIQMAVDAMTQILNAMQAPSEATATRWGGGCTSNMFGKICGFSTVATFFSAVDKRNKMDLNLLQLCINTKL-TEAEQIPLATV 517          
BLAST of EWM24842.1 vs. NCBI_GenBank
Match: gi|585100954|gb|EWM20971.1| (hypothetical protein Naga_102070g1 [Nannochloropsis gaditana])

HSP 1 Score: 81.6481 bits (200), Expect = 1.359e-14
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 0
Query:  334 LKERAVAATAVKTLALIDEALTKLNYQEDGTAIRWGGGCASAGM-VQQCGFEKAAFLKAMIGKERKEDAELYHMCLDTGLGSEPGQV 419
            +KE +    A   + ++ E L K+ Y EDG  IRWGGGC   G+ +  CGF   A+LKA++  E+++D  L  +CL+T L   PG+V
Sbjct:    1 MKEASAVFAATTAIKMMQENLAKIRYPEDGVTIRWGGGCVPVGLQINHCGFSSIAYLKAVLNAEQQQDIALIQLCLETYLDPMPGRV 87          
BLAST of EWM24842.1 vs. NCBI_GenBank
Match: gi|585110788|gb|EWM28404.1| (cd36-like class b scavenger receptor [Nannochloropsis gaditana])

HSP 1 Score: 86.6557 bits (213), Expect = 1.624e-14
Identity = 60/185 (32.43%), Postives = 91/185 (49.19%), Query Frame = 0
Query:  140 RRVTVSRWTR--NIGLLLLAIGLVALGSAIVSHTYLPEWRDKRALESLVVDS-PDHPNYAAWVNHASPSSAGRGEGDSPTYQRFYFFHLVNSKGFLQGKKPFYLEKGPYTFRQTKKKVDVNFSEKGTLVSYVTLVQNKYSPEQS--GKDVALSDTVTMLNLAYATAVATFGSESNLLRYGSRRAL 319
            RR     W +   +GL  + IGLV L  A + H   PE   ++  + LVV S         W+  +S  +        PT+   +F++L N+  FL G  P +   GP+T+RQ +++ DV F+  G+ V + T  +    PE +  G D   S  +T +N AYAT VA   +ESN++R G  R L
Sbjct:   93 RRKAGGTWFKGYTLGLTWMGIGLVVLAVAGILHKAFPELYKRKLRDKLVVTSMAQAEETVGWLGDSSLHT--------PTHIGLHFYNLTNAADFLGGALPAFELVGPFTYRQFRRRTDVVFAPDGSYVDFTTNFKAVLQPELTFGGTD---SWNITSINTAYATGVARKLAESNMVRIGVPRIL 266          
BLAST of EWM24842.1 vs. NCBI_GenBank
Match: gi|1192750486|ref|XP_021004437.1| (protein croquemort-like isoform X1 [Parasteatoda tepidariorum] >gi|1192750488|ref|XP_021004438.1| protein croquemort-like isoform X2 [Parasteatoda tepidariorum])

HSP 1 Score: 77.7962 bits (190), Expect = 6.892e-12
Identity = 49/150 (32.67%), Postives = 82/150 (54.67%), Query Frame = 0
Query:  153 LLLLAIGLVALGSAIVSHTYLPEWRDKRALESLVVDSPDHPNYAAWVNHASPSSAGRGEGDSPTYQRFYFFHLVNSKGFLQGK-KPFYLEKGPYTFRQTKKKVDVNFSEKGTLVSYVTLVQNKYSPEQSGKDVALSDTVTMLNLAYATAV 301
            ++L+A+G++     ++S+   P     +  E+L++ SP+   Y  W     P          P Y +FYFF++ N+K  L+ K KPF  E GPYTFR+T++KV++ +   GT VSY  + +  + P  +    +L D +T +N+  ATAV
Sbjct:   10 VILVAVGILMAVMGLLSYIMFPRILKWQVEENLIL-SPEAEPYEFW--RVIPV---------PIYSKFYFFNITNTKDILEHKAKPFVQELGPYTFRETREKVNITWHPNGT-VSYFQIKRWYFEPSMTSG--SLDDLITTVNVPLATAV 144          
BLAST of EWM24842.1 vs. NCBI_GenBank
Match: gi|923130739|ref|XP_013758835.1| (lysosome membrane protein 2 [Thecamonas trahens ATCC 50062] >gi|906555025|gb|KNC48268.1| lysosome membrane protein 2 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 78.1814 bits (191), Expect = 6.944e-12
Identity = 55/176 (31.25%), Postives = 84/176 (47.73%), Query Frame = 0
Query:  149 RNIGLLLLAIGLVALGSAIVSHTYLPEWRDKRALESLVVDSPDHPNYAAWVNHASPSSAGRGEGDSPTYQRFYFFHLVNSKGFLQGKKPFYLEKGPYTFRQTKKKVDVNFSEKGTLVSYVTLVQNKYSPEQSGKDVALSDTVTMLNL--AYATAVATFGSESNLLRYGSRRALMEI 322
            + +G+     GL+ + +A   +  +P    K+  +++V+DSP+   Y  WV   S   +G  E      Q + FF+L N+   L G  P +   GP+ +R+   K+D  F + G  VS+  + Q  + PEQS  D    D V + N    Y  AV   GSE NLL YG    L+ I
Sbjct:    9 KAVGITACVAGLLLIAAATTVYLLIPYLVQKKINDAVVIDSPNSSGYDNWV---SSYHSGNSE-----LQSYTFFNLTNAPDVLAGAAPVFEPVGPFVYRRNTVKLDPKFLDGGARVSFKEMSQYSFVPEQSIYDQL--DKVLLTNYFPFYQAAVNKAGSEKNLL-YGFLPTLLSI 173          
BLAST of EWM24842.1 vs. NCBI_GenBank
Match: gi|156355441|ref|XP_001623676.1| (predicted protein [Nematostella vectensis] >gi|156210398|gb|EDO31576.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 76.6406 bits (187), Expect = 1.652e-11
Identity = 52/174 (29.89%), Postives = 92/174 (52.87%), Query Frame = 0
Query:  149 RNIGLLLLAIGLVALGSAIVSHTYLPEWRDKRALE-SLVVDSPDHPNYAAWVNHASPS------SAGRGE-GDSPTYQRFYFFHLVNSKGFL-QGKKPFYLEKGPYTFRQTKKKVDVNFSEKGTLVSYVTLVQNKYSPE---QSGKDVALSDTVTMLNLAYATAVATFGSESNL 310
            +  G++L+  G+VA+   I+   ++   R K+ L+  + ++S DH  Y +WV+    +      +  R + G S +    YF+H+ N  GFL +G+ P + E+GPY ++ T +K+DV+F + G  V+Y    Q  +  +   Q+      SD +T+LNL Y  AVA  G +  +
Sbjct:    6 KRTGIILVIFGIVAVVVGILVGQFITR-RVKQGLDDQICINSKDHTGYDSWVSELLKAPDIWYHTIFRFQIGASESSASIYFWHIKNKNGFLHKGETPQFEERGPYVYKTTTEKIDVSFDDNGH-VTYKKYSQQTFDADATAQACPQCKESDQMTVLNLGYLGAVAQAGGDMGI 177          
BLAST of EWM24842.1 vs. NCBI_GenBank
Match: gi|260791976|ref|XP_002591003.1| (hypothetical protein BRAFLDRAFT_119088 [Branchiostoma floridae] >gi|229276203|gb|EEN47014.1| hypothetical protein BRAFLDRAFT_119088 [Branchiostoma floridae])

HSP 1 Score: 70.8626 bits (172), Expect = 2.293e-10
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = 0
Query:  215 PTYQRFYFFHLVNSKGFLQGKKPFYLEKGPYTFRQTKKKVDVNFSEKGTLVSYVTLVQNKYSPEQSGKDVALSDTVTMLNLAYATAVATFGSESNLLR 312
            P Y +FYFF L+N    L G KP +LEKGPYT+ + + KV+V F    T VSYV L    + P  S      +DT T +N+A  T      +E +L++
Sbjct:   63 PIYIQFYFFDLLNKDEVLNGAKPAFLEKGPYTYSEVRHKVNVTFHGNDT-VSYVDLKSYSFVPRMSAG--TQNDTFTSINIAAMTLSEWIENERDLIK 157          
BLAST of EWM24842.1 vs. NCBI_GenBank
Match: gi|675367991|gb|KFM60893.1| (Protein croquemort, partial [Stegodyphus mimosarum])

HSP 1 Score: 73.1738 bits (178), Expect = 2.564e-10
Identity = 49/150 (32.67%), Postives = 80/150 (53.33%), Query Frame = 0
Query:  153 LLLLAIGLVALGSAIVSHTYLPEWRDKRALESLVVDSPDHPNYAAWVNHASPSSAGRGEGDSPTYQRFYFFHLVNSKGFLQGK-KPFYLEKGPYTFRQTKKKVDVNFSEKGTLVSYVTLVQNKYSPEQSGKDVALSDTVTMLNLAYATAV 301
            +LL  +GL+   S + S+   P     +  E+L++ SP+   Y  W     P          P Y RFYFF++ N+K  +Q   KP+  E GPYTFR+T++K+++ +++ GT VSY  + +  + P  +    +L D VT +N+   TAV
Sbjct:   17 VLLATVGLLLALSGLCSYLLFPRILQWQVEENLIL-SPEAEPYEYW--KVIPV---------PIYARFYFFNVTNAKEVVQNNAKPYLQELGPYTFRETREKINITWNDNGT-VSYYQIKRWFFEPNLTTG--SLDDLVTTVNVPLVTAV 151          
BLAST of EWM24842.1 vs. NCBI_GenBank
Match: gi|1005956277|ref|XP_015786542.1| (PREDICTED: lysosome membrane protein 2-like [Tetranychus urticae])

HSP 1 Score: 72.7886 bits (177), Expect = 3.221e-10
Identity = 47/157 (29.94%), Postives = 71/157 (45.22%), Query Frame = 0
Query:  156 LAIGLVALGSAIVSHTYLPEWRDKRALESLVVDSPDHPNYAAWVNHASPSSAGRGEGDSPTYQRFYFFHLVNSKGFLQGKKPFYLEKGPYTFRQTKKKVDVNFSEKGTLVSYVTLVQNKYSPEQSGKDVALSDTVTMLNLAYATAVATFGSESNLLR 312
            L IGL    S IV   YLP   D     ++    P        + + S + +     D P Y RFY F+L N   F+ G+K  + E GPYTFRQ ++ V   ++   TL  Y T+    + P  S  +  L DT+T++N    T   T   ++ + +
Sbjct:   12 LIIGL----SIIVFGIYLPILIDNFITTTIQQKFP--------LTNGSETLSAWTNPDIPIYTRFYLFNLTNVDDFISGEKAIFTEMGPYTFRQVRRNVIHTWNSDETLFDYETIRSYNFVPHLSAGN--LDDTLTLINFPVVTIAKTIAEKAPMFK 154          
The following BLAST results are available for this feature:
BLAST of EWM24842.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106442|gb|EWM24842.1|0.000e+0100.00scavenger receptor class member 2 [Nannochloropsis... [more]
gi|585104049|gb|EWM23168.1|9.202e-4432.90uncharacterized protein Naga_100043g43 [Nannochlor... [more]
gi|585100954|gb|EWM20971.1|1.359e-1440.23hypothetical protein Naga_102070g1 [Nannochloropsi... [more]
gi|585110788|gb|EWM28404.1|1.624e-1432.43cd36-like class b scavenger receptor [Nannochlorop... [more]
gi|1192750486|ref|XP_021004437.1|6.892e-1232.67protein croquemort-like isoform X1 [Parasteatoda t... [more]
gi|923130739|ref|XP_013758835.1|6.944e-1231.25lysosome membrane protein 2 [Thecamonas trahens AT... [more]
gi|156355441|ref|XP_001623676.1|1.652e-1129.89predicted protein [Nematostella vectensis] >gi|156... [more]
gi|260791976|ref|XP_002591003.1|2.293e-1039.80hypothetical protein BRAFLDRAFT_119088 [Branchiost... [more]
gi|675367991|gb|KFM60893.1|2.564e-1032.67Protein croquemort, partial [Stegodyphus mimosarum... [more]
gi|1005956277|ref|XP_015786542.1|3.221e-1029.94PREDICTED: lysosome membrane protein 2-like [Tetra... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5844rna5844Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications