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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100322g6.5908.mrna |
| Orig protein id | gnl|cribi|Naga_100322g6.5908 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:973514..978238 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5843 ID=rna5843|Name=rna5843|organism=Nannochloropsis gaditana|type=mRNA|length=4151bp
AGGGCTGTCACACGACAAATCACGAAATTGGATGCTTGCTTTTATTACTT
TTGTGTCGTTCACAAATATTTAAGGCTTTGAAGATTTAATCGCATAGTGC
ATAATATAGATATAACAATTTACCACTCCTCCACCCCCTTGACGCATCCC
CCTACTCCTCGCTTTTCCCCCTGTTCTCTCGCGCAACTCCTGCTCTCGAC
AGGAAGCGGACGCCTTTAATTGCATTTTTACGTTCTGTCTGTTTTTCCCT
TGTCAAGTTGAAAATGAATTTGTCTTTTCCGATACTTCTCTCTGCGGAAA
ATTTCAATGAGTGCTATCTCGTCCATTCTTTGCCGCTTGAGCTTTCGCGT
TGAAGCCCATCACGGGATGCAGAGACGCGTGCCAAGCAACCGGCGCAAGA
TGCTCCCAAATTAAAAGGAACAATGAGGCGATACCATGATAACTTCAGTG
GTGTTCTTCTTGCCAATTGCAAGGAAAGAATGTCAGGAACGCTTGCAGAC
TTTTCATGGAAAGAGGAACTTGAAAAGCAAGTAAGATAACAAACCAGCCT
ACAGGTCCCCACTTTGGAAAGTGAAATGACGGATTCATATGCACCGCAGT
GCACTGCAATGGGTTTGGCTTCTCTTCTTCGCATGCCTGCCACCGCACAG
TTGTTCGAGTACACACAGTCCTTCAAATATAGTGCCGCCCCAATACCAGA
CGCCTCCCACTTCCTCAAGCTCAAAGCACGCATATGTCTGGTCGAGTCTA
TTCTCTCTCTGGCACATCTCGGCAGCCTTCACCGCCCTTGATAACCCCCG
TCCTGCACGTGGAATGAGGCGCATGTCTGCATCACTTGTAAGGCCCATAG
GTGAGGCCTCGTCGCTCCATCTCGCGGGCAGAATAGGGTAAGCGGGGCTG
CGGCTGATAGAAAAAGCGGGTCGGATAGCATAAGGGCCCCTCGTACTTGT
CGGGCACGTAGAAGGTGTAGGGTTTCCCGTAGTAATCGCGGACCCGCACA
GCCGGTATCCGGGGCGGTCGCTGCTGAGGAGGGCTTGTAGATTTCTTTCG
AGCACTCTTGCGTTGACTACGCTTGCTTTCAACACTCCCATGGCTTTGGT
TACTTGTGCGGCTGCTTCCGCTCTTGTCGAGGCTCTTGCCGGACATCCCC
GACTGCGGTGTGGCCTCCTTGGTTGGCCGTTCCTCTTCGCTGTGAGTGTT
TAGGTCCACAGGGCTCTTGACCTGCTGCTCATTATCGGAGGGGCGCCCCG
TTGGAGGGGAAGAGGGTGGTGGGATGGCCTCGGGATGCACGCTGGCACCG
GCAGCCTCTGTCTCGTGTTGGGTGAGGGGTGTAGGACCAGCTGGCAAAGC
CAGAGCCGGGTCGTCTGTAGGTGCCTTCTGGCCTTGAAGCGCGGGCTCAA
GGGAGGGCACCGCTTGGGGTGGAGAGGAGGGAAGAGTCCCCGTGAAACTT
GGCGTTGCATGCGGGTAGTGCGGTTGCTGCGGGTATGGATGCTGGTGGTA
GTATGGGAGGGGCAGGGGGGGGGAGACGGGAGGAGTGAAAGGATGGTGAG
GCGGCTGCAGCATAGGAGGCAATCCAGGGGGCGTGTAGTGATAAATCTCC
TGTGGATACATCGCATGTTGCTGCTCGAAATTGAATGGCATGGGGGGCGT
GTGAGGAGGAGTGAAAGGATGAAGAGGCGGCTGCAGCAGAGGAGGAGATC
CAGGGGGTGCGTATTGCGGATAGGATTCCGGCGAGGGCTGCCGCTCGTAT
GACGCTGGTGTCTGCGTATGGTAGTATGGGACAGGCTGGGGCTGCGACTG
CGGCAGGTCGTCGGGGTAGGTGTAATAGACAGCGCCGTCTCGGTACTCGG
ACAGGATCGGGGCCGGCGGGGGAATGTAAGTGCCCACTTCCTGTGCCTCT
TTGGTGGCCCCAGCGCCCTCCGATGGGCCCATGGCCTCTCCGTGGCTTTC
CTTCTCCGCTCCCTCTTGCGCCCTACCCGCCATATCGGCGTTTTCTGCAA
GTGCACCGTCCACAGGGACATCATCGTCCAAGGGTTCCTTCTTCGCCGTG
CCATGTGCCACGCCCTGTGTGTCGCCGATCTCCCCAGGCTCTCCCTGCAC
GGGAATGCGACCCTCTTCGGGCTCGGGCGTCAATGCACCTGCCATGTTGG
AGCCCTCAGTGTCGATGGAAGCAGAGAATTCAAGGGACTCATCCCCCAGG
ATGTTTTGATCAGCTTGGAGCGGCGGTGTGGAAGAAGGGGGCTGGGGATG
GCATGCTGGCGCGGGCGGGGACTTGAAGTCCACAGGCGGGGGGGAAGGGT
TCAAGAAATGAACCGGAGGAGCGGGTGAAAAGGCCAATGTGCCGTATCCA
CCCGTCACAGGAGGAGGAAGTGGAGAATGATAAGGCGGAGGCAGAGGGTG
AGGCTCGACACTCACCGGGTACGGGAGGTACGTCACACTGGTGCCCTCCG
CGGCGCCTTCAAAGCCGTAGCCACCCGCCAATGAAGCCTCACCAAGGCTG
TGGGGAGAGCCGTGGCCAGGATGATGGACCCGCCGGCCGTCCAGAGCGGC
GCGCGGGTGTCGTGGGTGGGGCACACGGTGCCCGTGCTTGCGCTGCCCAG
CCAGGGATCCGCCGGGCTGCGATCCAGTCTGAGGTCGGTACTGACGACGG
ATGTGTTGGTGGCCCTGTCGAGGAGGGTAGCTTTGGTGGGAGGGCGGTGG
AAAGGTGTGGCTGCGCACGTGATGTTGCGGATGCCCTCGAGACAGGTCAG
GGTAAGGCTTGTGGAATGTGGGGTCTTGGAAGAAGTGCTGCTGGAATTGA
TGCGGCTGTTGCTGCATGTGGTAATGACTCTCTCGTCCTTGCTGCTCCTG
GTTCCAATAGCGTTGTTGCTGATGGTGTCCCTGTGGCTCCCGATGATTGA
ATTGCGATAAATGCTGTTGGTAAGCGGAGGACTCCGGCCATAGAGAGGGA
CGCCCTAATGCTTGCAGCGGGGAGAGATGCCCCTGCGCCGGCGCTTGATG
GAAAGAGCCATGCCTCGTGGGCGATCGCGCCCAAAAAAGCTTCGAGGGCT
GAGGCGACTGCAGCAGATGGTGCTGATTGAGTGGCTCGATGGGGACCTGG
ACAGGAGCCAAGGCGGCTTCAGTAGGAGAGTCTTTAGTGCTGGCGGGGGA
GGATCCCCCTGGCAAAGAGGAGGGCTGCGGCTCAGAGCAATGCTTTGGGA
CCGCCAAAAGGGATCGTTTCAAAAGTGCCTGCTCGCGTGCCAGATTTTTC
TGCTCCAGGATTGAAGGGTCTAGCTCTTGGCGGCGGAGCGCTGCCAGGCG
TCGTCGTGCGGCCCCTGACAAGCGTTTGCGTGACATGGGAGCCGGTGTCG
GTTGGGTGGAAAATTGGTTTGGCGTTGTTCTGTTTCAAGCAGATGAAGAC
AGAAAATAAGTATGAGGCGACGCAAAAGAAACCCGCGATATACAGGCCAA
GTCTCATTTTTGACACGGAGAGGCTTGAACCTCGTGACATACGTTTGCAA
CAACAATTGTGACATGGCAAAGGGCTTCAAAACGTCAGGCCGCAACGAAC
GGCGTCCTGCGGGAGAGAAGTAGGGATGGGGCAAGGAACGGTAAAAGGAC
GGGCGAGAGAACGACAGGGTCTATAGCCCCTGGTAAGAGCTGTGGACCTG
GTCCGAGGCCAGGCAGGGTGGCGGTCTCCCGCATATTAGAATATTTGCGA
GCCATAAACTACATAATTCTGATCTAGAATAAATCTCACACACCAAACGA
CGTGTGTTTATGTGGTTTGTTTCATTACCGTCAATCGTGTGGAAGCAGCT
CGATTGTTTCAAACAGTGAAACGTTCTTTCAAAGCTGGTGGATCGATTTC
CCCCCTCCCAAGGACTACTTTGCAGAAAGTGCAAATAGATTGGATATTTT
GGTAAAAACTCATGCGTAAGTACTAGTACATTGATCGTTCAACTATTAAA
ATTCGCTTTAAGAAAAGAAAAAGGCTCGCCAAAGCCTCCCCTGAGGGACA
GTCACCTTTCCTTGAAGAAGAACCAGGCCTATCACAAACCTGTGTGCCTT
GTGAGGCATGCGCTAGGAATTGCAAAATATTCACAGAGCCCAGATAATGT
ACATTCGTGCTATGATCATGGCATTTCATGCTCTGCTTCAAATCATATAG
G back to topprotein sequence of rna5843 >rna5843-protein ID=rna5843-protein|Name=rna5843|organism=Nannochloropsis gaditana|type=polypeptide|length=187bp
MCRIHPSQEEEVENDKAEAEGEARHSPGTGGTSHWCPPRRLQSRSHPPMK
PHQGCGESRGQDDGPAGRPERRAGVVGGAHGARACAAQPGIRRAAIQSEV
GTDDGCVGGPVEEGSFGGRAVERCGCARDVADALETGQGKACGMWGLGRS
AAGIDAAVAACGNDSLVLAAPGSNSVVADGVPVAPDD back to topmRNA from alignment at CM002466.1:973514..978238+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5843 ID=rna5843|Name=rna5843|organism=Nannochloropsis gaditana|type=mRNA|length=4725bp|location=Sequence derived from alignment at CM002466.1:973514..978238+ (Nannochloropsis gaditana)
agggctgTCACACGACAAATCACGAAATTGGATGCTTGCTTTTATTACTT
TTGTGTCGTTCACAAATATTTAAGGCTTTGAAGATTTAATCGCATAGTGC
ATAATATAGATATAACAATTTAccactcctccacccccttgaCGCATCCC
CCTActcctcgcttttccccctgttCTCTCGCGCAACTCCTGCTCTCGAC
AGGAAGCGGACGCCTTTAATTGCATTTTTACGTTCTGTCTGTTTTTCCCT
TGTCAAGTTGAAAATGAATTTGTCTTTTCCGATACTTCTCTCTGCGGAAA
ATTTCAATGAGTGCTATCTCGTCCATTCTTTGCCGCTTGAGCTTTCGCGT
TGAAGCCCATCACGGGATGCAGAGACGCGTGCCAAGCAACCGGCGCAAGA
TGCTCCCAAATTAAAAGGAACAATGAGGCGATACCATGATAACTTCAGTG
GTGTTCTTCTTGCCAATTGCAAGGAAAGAATGTCAGGAACGCTTGCAGAC
TTTTCATGGAAAGAGGAACTTGAAAAGCAAGTAAGATAACAAACCAGCCT
ACAGGTCCCCACTTTGGAAAGTGAAATGACGGATTCATATGCACCGCAGT
GCACTGCAATGGGTTTGGCTTCTCTTCTTCGCATGCCTGCCACCGCACAG
TTGTTCGAGTACACACAGTCCTTCAAATATAGTGCCGCCCCAATACCAGA
CGCCTCCCACTTCCTCAAGCTCAAAGCACGCATATGTCTGGTAAGTCACT
GGGTAGAGATCTGCTTGAATCTCAGCACCTATACTTTTTTATTCTACTTA
GAAATGGCACTCATCTTGCCAAGGCAGGGGGGTTAATTACCACTCACAAT
GCCACCAATATATTTTTTGCTCATGTTAAAAGTTATCGATTTCGATTTTG
ATCCCTCGGTTTTCCTTGAGTCTCATCATGCTTCATTTGCAAGTTCTGGA
TGGTTTGAGTACTTTTCATCCTTTTTTAAGCGTATGTGTCCCCTTCTCTG
GTTCAGTCTCTCCTCTTGTGCATCCTGAAATTAGCTTCAGGCTTGACAGC
ATAAAGTCGCATCATAAAATCACTCTTATTTTCATGTTCTGTTAAGCTCA
CCTGCATATGTGCCCGCGGCTCATAGGTCGAGTCTATTCTCTCTCTGGCA
CATCTCGGCAGCCTTCACCGCCCTTGATAACCCCCGTCCTGCACGTGGAA
TGAGGCGCATGTCTGCATCACTTGTAAGGCCCATAGGTGAGGCCTCGTCG
CTCCATCTCGCGGGCAGAATAGGGTAAGCGGGGCTGCGGCTGATAGAAAA
AGCGGGTCGGATAGCATAAGGGCCCCTCGTACTTGTCGGGCACGTAGAAG
GTGTAGGGTTTCCCGTAGTAATCGCGGACCCGCACAGCCGGTATCCGGGG
CGGTCGCTGCTGAGGAGGGCTTGTAGATTTCTTTCGAGCACTCTTGCGTT
GACTACGCTTGCTTTCAACACTCCCATGGCTTTGGTTACTTGTGCGGCTG
CTTCCGCTCTTGTCGAGGCTCTTGCCGGACATCCCCGACTGCGGTGTGGC
CTCCTTGGTTGGCCGTTCCTCTTCGCTGTGAGTGTTTAGGTCCACAGGGC
TCTTGACCTGCTGCTCATTATCGGAGGGGCGCCCCgttggaggggaagag
ggtggtgggATGGCCTCGGGATGCACGCTGGCACCGGCAGCCTCTGTCTC
GTGTTGGGTGAGGGGTGTAGGACCAGCTGGCAAAGCCAGAGCCGGGTCGT
CTGTAGGTGCCTTCTGGCCTTGAAGCGCGGGCTCAAGGGAGGGCACCGCT
tggggtggagaggagggaagagtcCCCGTGAAACTTGGCGTTGCATGCGG
GTAGTGCGGTTGCTGCGGGTATGGATGCTGGTGGTAGtatgggaggggca
gggggggggagacgggaggaGTGAAAGGATGGTGAGGCGGCTGCAGCATA
GGAGGCAATCCAGGGGGCGTGTAGTGATAAATCTCCTGTGGATACATCGC
ATGTTGCTGCTCGAAATTGAATGGCATGGGGGGCGTGTGAGGAGGAGTga
aaggatgaagaggcggctgcagcagaggaggagatccaGGGGGTGCGTAT
TGCGGATAGGATTCCGGCGAGGGCTGCCGCTCGTATGACGCTGGTGTCTG
CGTATGGTAGTATGGGACAGGCTGGGGCTGCGACTGCGGCAGGTCGTCGG
GGTAGGTGTAATAGACAGCGCCGTCTCGGTACTCGGACAGGATCGGGGCC
GGCGGGGGAATGTAAGTGCCCACTTCCTGTGCCTCTTTGGTGGCCCCAGC
GCCCTCCGATGGGCCCATGGCCTCTCCgtggctttccttctccgctccct
cttgcgCCCTACCCGCCATATCGGCGTTTTCTGCAAGTGCACCGTCCACA
GGGACATCATCGTCCAAGGGttccttcttcgccgtgCCATGTGCCACGCC
CTGTGTGTCGCCGATCTCCCCAGGCTCTCCCTGCACGGGAATGCGACCCT
CTTCGGGCTCGGGCGTCAATGCACCTGCCATGTTGGAGCCCTCAGTGTCG
ATGGAAGCAGAGAATTCAAGGGACTCATCCCCCAGGATGTTTTGATCAGC
TTGGAGCGGCggtgtggaagaagggggctggggatggcatgctggcgcgg
gcggggactTGAAGTCcacaggcgggggggaagggttcAAGAAATGAACC
GGAGGAGCGGGTGAAAAGGCCAATGTGCCGTATCCACCCGtcacaggagg
aggaagtggagaatGATaaggcggaggcagagggtgAGGCTCGACACTCA
CCGGGTACGGGAGGTACGTCACACTGGTGCCCTCCGCGGCGCCTTCAAAG
CCGTAGCCACCCGCCAATGAAGCCTCACCAAGGCTGTGGGGAGAGCCGTG
GCCAGGATGATGGACCCGCCGGCCGTCCAGAGCGGCGCGCGGGTGTCGTG
GGTGGGGCACACGGTGCCCGTGCTTGCGCTGCCCAGCCAGGGATCCGCCG
GGCTGCGATCCAGTCTGAGGTCGGTACTGACGACGGATGTGTTGGTGGCC
CTGTCGAGGAGGGTAGCtttggtgggagggcggtggaaagGTGTGGCTGC
GCACGTGATGTTGCGGATGCCCTCGAGACAGGTCAGGGTAAGGCTTGTGG
AATGTGGGGTCTTGGAAGAAGTGCTGCTGGAATTGATGCGGCTGTTGCTG
CATGTGGTAATGACTCTCTCGTCCTTGCTGCTCCTGGTTCCAATAGCGTT
GTTGCTGATGGTGTCCCTGTGGCTCCCGATGATTGAATTGCGATAAATGC
TGTTGGTAAGCGGAGGACTCCGGCCATAGAGAGGGACGCCCTAATGCTTG
CAGCGGGGAGAGATGCCCCTGCGCCGGCGCTTGATGGAAAGAGCCATGCC
TCGTGGGCGATCGCGCCCAAAAAAGCTTCGAGGGCTGAGGCGACTGCAGC
AGATGGTGCTGATTGAGTGGCTCGATGGGGACCTGGACAGGAGCCAAGGC
GGCTTCAGTAGGAGAGTCTTTAgtgctggcgggggaggatCCCCctggca
aagaggagggctgCGGCTCAGAGCAATGCTTTGGGACCGCCAAAAGGGAT
CGTTTCAAAAGTGCCTGCTCGCGTGCCAGATTTTTCTGCTCCAGGATTGA
AGGGTCTAGCTCTTGGCGGCGGAGCGCTGCCAGGCGTCGTCGTGCGGCCC
CTGACAAGCGTTTGCGTGACATGGGAGCCGGTGTCGGTTGGGTGGAAAAT
TGGTTTGGCGTTGTTCTGTTTCAAGCAGATGAAGACAGAAAATAAGTATG
AGGCGACGCAAAAGAAACCCGCGATATACAGGTGAGACGTAGTGTGTGCG
TGAAAGCGCAAACAGTATTTAGGTCcaggggaatggaggggcaTGTATTA
TTATGGGACGTCAAAGACAGTAGAGAACCCATGCGTCATTTTCCAACGTA
CGAGAGATGGAGACACCTACCATATGTGAATATCTAATAAGCCTACCCTC
GTCATCTTACCTCGATGAGGCCAAGTCTCATTTTTGACACGGAGAGGCTT
GAACCTCGTGACATACGTTTGCAACAACAATTGTGACATGGCAAAGGGCT
TCAAAACGTCAGGCCGCAACGAACGGCGTCCTGCGGGAGAGAAGTAGGGA
TGGGGCAAGGAACGGTAAAAGGACGGGCGAGAGAACGACAGGGTCTATAG
CCCCTGGTAAGAGCTGTGGACCTGGTCCGAGGCCAGGCAGGGTGGCGGTC
TCCCGCATATTAGAATATTTGCGAGCCATAAACTACATAATTCTGATCTA
GAATAAATCTCACACACCAAACGACGTGTGTTTATGTGGTTTGTTTCATT
ACCGTCAATCGTGTGGAAGCAGCTCGATTGTTTCAAACAGTGAAACGTTC
TTTCAAAGCTGGTGGAtcgatttcccccctcccaaggaCTACTTTGCAGA
AAGTGCAAATAGATTGGATATTTTGGTAAAAACTCATGCGTAAGTACTAG
TACATTGATCGTTCAACTATTAAAATTCGCTttaagaaaagaaaaaggct
cGCCAAAGCCTCCCCTGAGGGACAGTCACCTTTCCTTGAAGAAGAACCAG
GCCTATCACAAACCTGTGTGCCTTGTGAGGCATGCGCTAGGAATTGCAAA
ATATTCACAGAGCCCAGATAATGTACATTCGTGCTATGATCATGGCATTT
CATGCTCTGCTTCAAATCATATAGG back to topCoding sequence (CDS) from alignment at CM002466.1:973514..978238+ >rna5843 ID=rna5843|Name=rna5843|organism=Nannochloropsis gaditana|type=CDS|length=564bp|location=Sequence derived from alignment at CM002466.1:973514..978238+ (Nannochloropsis gaditana)
ATGTGCCGTATCCACCCGtcacaggaggaggaagtggagaatGATaaggc
ggaggcagagggtgAGGCTCGACACTCACCGGGTACGGGAGGTACGTCAC
ACTGGTGCCCTCCGCGGCGCCTTCAAAGCCGTAGCCACCCGCCAATGAAG
CCTCACCAAGGCTGTGGGGAGAGCCGTGGCCAGGATGATGGACCCGCCGG
CCGTCCAGAGCGGCGCGCGGGTGTCGTGGGTGGGGCACACGGTGCCCGTG
CTTGCGCTGCCCAGCCAGGGATCCGCCGGGCTGCGATCCAGTCTGAGGTC
GGTACTGACGACGGATGTGTTGGTGGCCCTGTCGAGGAGGGTAGCtttgg
tgggagggcggtggaaagGTGTGGCTGCGCACGTGATGTTGCGGATGCCC
TCGAGACAGGTCAGGGTAAGGCTTGTGGAATGTGGGGTCTTGGAAGAAGT
GCTGCTGGAATTGATGCGGCTGTTGCTGCATGTGGTAATGACTCTCTCGT
CCTTGCTGCTCCTGGTTCCAATAGCGTTGTTGCTGATGGTGTCCCTGTGG
CTCCCGATGATTGA back to top
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