rna5840, rna5840 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5840
Unique Name	rna5840
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1674
Alignment location	CM002466.1:968218..970341 +

Link to JBrowse

Properties


Property Name	Value
Product	Zn(2)-C6 fungal-type DNA-binding domain protein
Orig transcript id	gnl\|cribi\|Naga_100866g2.1200.mrna
Orig protein id	gnl\|cribi\|Naga_100866g2.1200
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:968218..970341 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100866g2	gene5638	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5840	rna5840-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24849.1	cds5825	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:968218..970341+
coding sequence from alignment at CM002466.1:968218..970341+

mRNA sequence

>rna5840 ID=rna5840|Name=rna5840|organism=Nannochloropsis gaditana|type=mRNA|length=1674bp
TTCCCTCCCTTTCCTCCCTTTTTGCTAGTTCTCTCTCCCCTACCTGTCCT
CACTCCATCCATGCACCGTGCTACCGCCATCCGTACACCACGATTCGACA
CGAAACCATCGACCCCCCCACCCCCGCCCTCCCTTCCTTCCTCATCAGTA
CAACGTCACGCGGGGGAGGAGGTGGGCCCTCATCCGGAAGGATGGGAGGA
GGCGCTCGCCCGCATGGAGGAGGAGAAACTGAAGCGCGACCAGCACATGG
CTGCGGTCCAGCCAGGGCACGCAGCCCATTCCTCCCTCCCTTCCTCCCTC
CCTTCCTCCCGCCCGCCCTCTTCCTCTCCCGGGGTGTGTGAGGAAAGCCT
CGTCCCTAGAGAATACATCGAATGGGTTGACGCCTGGCTTCATATGCTCC
TCGATGGCCGTGCTCCCGGTAGGGAGGGAGGGAGGGAGGGAAGGAGGGAG
GGGAGGAAGAGGAAGGGTCCTCTGTCCAGGAAGGCCGGGAAAGGAAGCCA
AAAAGTGTCAGAACACAGAAATGGATCAAGGAAAAGAGAAGTAGTCGGCG
GTCTTGCTTGCCTCCTCCTTTCCTCCTTCCCTCCTTCACGCCCTCCCTCC
CTCCTTCCAACCTTCCATCCCTCCCTGTCTCCCTCCCGCAAGCCCTCCGT
TTCCCTCTCTCCTTGAACGCGGCGGAGCGGCGCGCGATTCACGCGCGCTG
CAAACCTCGTGGACTCAACAGCAAGAGTGCAGGAGGCAAAAAGGGAGGGA
AAGGGGAGGGGGGGGGAGGAGCAGGGGAAGGGAGCCGGCAGGTATGGGTA
TTCTGGAAAGAAGAGGAAAAACGGAGGGCGTGCGAGGGCTATGTTCAGGT
GGGGAAGAAGGGAGGGAGGAATGGAGGGAGAAAGGGAGGATGGATGGGAC
TGAGCCTTGCATACATATTTTTTTGAGGGAAAGGAACGAGCCTCGAGAAT
CAAAGGCGTGCGATTCTGGTCTGAACATCCGTTTCCTTCCTACGTCTTCC
CCTTCCCAACCCCACCCCTGCCTGCGCCCTCCCTCTCTTCCTCCCTCCTT
AGATCCCGAGCGCTGCGAGCTACCCGTCGCCGGACCTGATTGCCTCGCTG
CCCGTCTTGAGGATAGAAGATAATGGTGTTCCCCTTCCCCTCGCCTTAAA
GCAATCTTCTTCTCCCTCTCCTCCCCCTGCTCCTTCTGCTGCTCCGCCTG
CCCTCCTCACTCCTCATCCTTCCTAACCCCTTTCTCCCTCTTTTCTTCCT
CATATTCGTGAACGTGTAACCGTAAATAAAGTATCCGCCACGCAGATTGA
ATTCGATAGTGTACAAGGACTAGACCAGGCGTGAAAAGACGAAAAACCAG
CCAAGCGAATATTTTGATGCTTGTCAAGACTTTGAAAGCTGCTTTCAACC
TGTATCACCTGGATTTCATCGTATGCTTTTTTCTCTTCAAGTCTTTCTTT
TCCTGCTTATGAAGCACCGAGAAATAGCATACCCTGCCCTCGCATTTCTG
GAGTAAAGATCATGGCATCCCACTCGCCTCGTCCATTCGGGCGCTTTCCT
GATTATTTTTTCCTCCTCTTCATCAATCAAATCATACACACTGATACGTT
CAATCTAGGTTTGCCCTCAATATTTTACCGGATAAAACCATAGTGTTTCT
TTATTGAAATCGTGGCTGTTTTGC

protein sequence of rna5840

>rna5840-protein ID=rna5840-protein|Name=rna5840|organism=Nannochloropsis gaditana|type=polypeptide|length=358bp
MAPVITAGSTALSLLDGLTCECCKRDKTKCSRHWPCARCIRLKQPCVLSQ
RRVSRLLQSGACFSTSRLQPPPPHDQGVGGRFTSAGRGMGLDKQVLAAAR
DNRLLSILQCHAGGMRAAAALVVAFHRLLADGRVNRDRAINTLHLWHREI
RRIGTDVTLGAFEQICRALQLRAGERNEILELCRPPRLLTSSSSESGCGT
GRTSGSEVPPTGEGSEVPREGEGPAIPPSSRYRPCCEKADRYDSAEWKLS
RLGGSAAGDGEGASDGGRGGRVMDLATFRSMDDPMGPAMLMCLYADGEGK
DLGLQGDDRGVTPGEGIGEGGGGRVSLNQVFETMFVSCEEWAQLASTLRV
IHVYLFFG

mRNA from alignment at CM002466.1:968218..970341+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5840 ID=rna5840|Name=rna5840|organism=Nannochloropsis gaditana|type=mRNA|length=2124bp|location=Sequence derived from alignment at CM002466.1:968218..970341+ (Nannochloropsis gaditana)
GAGGCCAGACGGGAAAGTGCAGATGGACAAGATGATCATAAAACCGACGT
CCAGTTAGCCGGGGTACCAACAGCAGGGGCCGTCACGCAAAAAGGAAAAC
ATTGGCCTGCATAACGTCTCGGCTTGGAACAATTCCCACACAATACAGAT
GGCTCCAGTGATCACAGCGGGTAGTACTGCACTCTCTCTGCTGGATGGGC
TGACCTGCGAGTGCTGCAAAAGGGATAAGGTGAGCAGGAAATGGAGACCA
TAAAGCGGGATCCCTCAGAGCTCAGGCACGCAATGCGAGGACACAGGGAT
CCATTTTGTAaagctctttcttttcaaatTCTCATCGATCTCTCTCTCGC
CGCATTCTTGAATAGACAAAATGTAGTCGTCACTGGCCTTGTGCGGTACG
TACCTTCCCCCGCTGGCGGgcaccctcttcttcctgtggGTCGTGTTCTG
TTTGGCAGGGCTACCCCATAGAATTAAATAGGGCAATTCTTCTCGTCTGT
ATGACCTGCAATCTATCGAATCGTCGGCCAGTAGTCTCCTGCGTATCTCT
TCTTAGTCCCATGACGCGGTCACATCGTACGCATGTGTCGGCGCCTGGTT
GCACATTCctgctcatcctcttctATCCCTTGCccccacatcctccctcc
cacagcGATGCATACGTCTGAAACAGCCCTGCGTCCTCTCTCAACGTCGC
GTGTCCCGGTTGCTCCAGTCGGGGGCGTGTTTTTCCACTAGTCGGctcca
acccccccccccgcatgATCAAGGGGTTGGGGGAAGGTTTACGAgcgcgg
gaagagggatgggCCTGGACAAACAGGTGCTCGCGGCAGCGCGGGACAAC
AGgcttctttccatcctccaGTGTCACGCCGGGGGAATGCGCGCCGCGGC
TGCCCTTGTTGTCGCGTTCCACCGGCTCTTGGCCGACGGTCGGGTCAACA
GGGACCGGGCCATCAATACTCTGTGAgtggggggcggtgggacgGAGAAG
GTTTGATTGGTCTCCTGCTTTTTGGAGGGGGGTATGGAATGTTCTGGTAG
GCTTTCCGAAGTTCACGTCAGCTTCAGGAAGAAATCGCTTAGTCTTGAGT
GTATTATCTGTCACGTGCCAGGGGTAAGTGTTGTGTGTGCGTGGTCTGGC
CTGTCGAGATAATCTGCCATCTcggtcctcctctcttgttGAGATGTTCG
GACGTATGCGATACAATCTGGACCTGAGTTTCATATTCTTgacgccttct
ctcccgcttCCAGGCACCTTTGGCACCGAGAGATACggcggatcggaacg
gacGTGACGCTTGGGGCGTtcgaggtagggaggaggaaaagagggaggca
gcaaAGCAAAAGGCTGTGCATCGGCGCACGTCGTCCTCTTGCGCAAGGGG
CAAAACGCCCACCCTGTGCTTCGCCTGCCTGGGGCATCCATGGATGTctc
acttcttcctctttttgaagTATGTCGCTGTTCTgaccactccttccctt
ctcccctcttccccgtcctttcAGCAAATATGCCGAGCTCTGCAACTCAg
agcaggggaaaggaatgaaatCCTGGAGCTCTGTCGACCGCCGCGTCTGc
tgacgtcctcctcgtcggaaAGTGGATGCGGCACCGGCCGAACATCGGGA
AGCGAGGTGCCTCCaacaggagaaggaagcgaggtgcctcgagaaggaga
aggccccGCCATTCCGCCTTCATCGCGCTACCGACCGTGTTGTGAAAAAG
CGGACCGGTACGACTCGGCGGAATGGAAGCTTTCGCGCTTGGGTGGGAGC
GCggcaggggatggggaaggggcaagcgacggaggaaggggagggagggt
gatggaTTTGGCGACGTTTCGGTCCATGGACGATCCGATGGGCCCAGCCA
TGCTCATGTGTCTATACgcagacggggaagggaaagaccTGGGGCTTCAA
GGGGACGACCGGGGGGTCACGCCCGGCGAGGGGatcggggagggtggggg
cgggcgcgtcAGCCTCAATCAAGTGTTTGAGACCATGTTCGTCTCCTGCG
AGGAGTGGGCCCAGCTAGCGAGTACCCTGCGGGTCATTCATGTCTACCTC
TTTTTCGGGtgaggatgggagggc

Coding sequence (CDS) from alignment at CM002466.1:968218..970341+

>rna5840 ID=rna5840|Name=rna5840|organism=Nannochloropsis gaditana|type=CDS|length=5385bp|location=Sequence derived from alignment at CM002466.1:968218..970341+ (Nannochloropsis gaditana)
ATGGCTCCAGTGATCACAGCGGGTAGTACTGCACTCTCTCTGCTGGATGG
GCTGACCTGCGAGTGCTGCAAAAGGGATAAGACAAAATGTAGTCGTCACT
GGCCTTGTGCGcGATGCATACGTCTGAAACAGCCCTGCGTCCTCTCTCAA
CGTCGCGTGTCCCGGTTGCTCCAGTCGGGGGCGTGTTTTTCCACTAGTCG
GctccaacccccccccccgcatgATCAAGGGGTTGGGGGAAGGTTTACGA
gcgcgggaagagggatgggCCTGGACAAACAGGTGCTCGCGGCAGCGCGG
GACAACAGgcttctttccatcctccaGTGTCACGCCGGGGGAATGCGCGC
CGCGGCTGCCCTTGTTGTCGCGTTCCACCGGCTCTTGGCCGACGGTCGGG
TCAACAGGGACCGGGCCATCAATACTCTGCACCTTTGGCACCGAGAGATA
CggcggatcggaacggacGTGACGCTTGGGGCGTtcgagCAAATATGCCG
AGCTCTGCAACTCAgagcaggggaaaggaatgaaatCCTGGAGCTCTGTC
GACCGCCGCGTCTGctgacgtcctcctcgtcggaaAGTGGATGCGGCACC
GGCCGAACATCGGGAAGCGAGGTGCCTCCaacaggagaaggaagcgaggt
gcctcgagaaggagaaggccccGCCATTCCGCCTTCATCGCGCTACCGAC
CGTGTTGTGAAAAAGCGGACCGGTACGACTCGGCGGAATGGAAGCTTTCG
CGCTTGGGTGGGAGCGCggcaggggatggggaaggggcaagcgacggagg
aaggggagggagggtgatggaTTTGGCGACGTTTCGGTCCATGGACGATC
CGATGGGCCCAGCCATGCTCATGTGTCTATACgcagacggggaagggaaa
gaccTGGGGCTTCAAGGGGACGACCGGGGGGTCACGCCCGGCGAGGGGat
cggggagggtgggggcgggcgcgtcAGCCTCAATCAAGTGTTTGAGACCA
TGTTCGTCTCCTGCGAGGAGTGGGCCCAGCTAGCGAGTACCCTGCGGGTC
ATTCATGTCTACCTCTTTTTCGGGtgaATGGCTCCAGTGATCACAGCGGG
TAGTACTGCACTCTCTCTGCTGGATGGGCTGACCTGCGAGTGCTGCAAAA
GGGATAAGACAAAATGTAGTCGTCACTGGCCTTGTGCGcGATGCATACGT
CTGAAACAGCCCTGCGTCCTCTCTCAACGTCGCGTGTCCCGGTTGCTCCA
GTCGGGGGCGTGTTTTTCCACTAGTCGGctccaacccccccccccgcatg
ATCAAGGGGTTGGGGGAAGGTTTACGAgcgcgggaagagggatgggCCTG
GACAAACAGGTGCTCGCGGCAGCGCGGGACAACAGgcttctttccatcct
ccaGTGTCACGCCGGGGGAATGCGCGCCGCGGCTGCCCTTGTTGTCGCGT
TCCACCGGCTCTTGGCCGACGGTCGGGTCAACAGGGACCGGGCCATCAAT
ACTCTGCACCTTTGGCACCGAGAGATACggcggatcggaacggacGTGAC
GCTTGGGGCGTtcgagCAAATATGCCGAGCTCTGCAACTCAgagcagggg
aaaggaatgaaatCCTGGAGCTCTGTCGACCGCCGCGTCTGctgacgtcc
tcctcgtcggaaAGTGGATGCGGCACCGGCCGAACATCGGGAAGCGAGGT
GCCTCCaacaggagaaggaagcgaggtgcctcgagaaggagaaggccccG
CCATTCCGCCTTCATCGCGCTACCGACCGTGTTGTGAAAAAGCGGACCGG
TACGACTCGGCGGAATGGAAGCTTTCGCGCTTGGGTGGGAGCGCggcagg
ggatggggaaggggcaagcgacggaggaaggggagggagggtgatggaTT
TGGCGACGTTTCGGTCCATGGACGATCCGATGGGCCCAGCCATGCTCATG
TGTCTATACgcagacggggaagggaaagaccTGGGGCTTCAAGGGGACGA
CCGGGGGGTCACGCCCGGCGAGGGGatcggggagggtgggggcgggcgcg
tcAGCCTCAATCAAGTGTTTGAGACCATGTTCGTCTCCTGCGAGGAGTGG
GCCCAGCTAGCGAGTACCCTGCGGGTCATTCATGTCTACCTCTTTTTCGG
GtgaATGGCTCCAGTGATCACAGCGGGTAGTACTGCACTCTCTCTGCTGG
ATGGGCTGACCTGCGAGTGCTGCAAAAGGGATAAGACAAAATGTAGTCGT
CACTGGCCTTGTGCGcGATGCATACGTCTGAAACAGCCCTGCGTCCTCTC
TCAACGTCGCGTGTCCCGGTTGCTCCAGTCGGGGGCGTGTTTTTCCACTA
GTCGGctccaacccccccccccgcatgATCAAGGGGTTGGGGGAAGGTTT
ACGAgcgcgggaagagggatgggCCTGGACAAACAGGTGCTCGCGGCAGC
GCGGGACAACAGgcttctttccatcctccaGTGTCACGCCGGGGGAATGC
GCGCCGCGGCTGCCCTTGTTGTCGCGTTCCACCGGCTCTTGGCCGACGGT
CGGGTCAACAGGGACCGGGCCATCAATACTCTGCACCTTTGGCACCGAGA
GATACggcggatcggaacggacGTGACGCTTGGGGCGTtcgagCAAATAT
GCCGAGCTCTGCAACTCAgagcaggggaaaggaatgaaatCCTGGAGCTC
TGTCGACCGCCGCGTCTGctgacgtcctcctcgtcggaaAGTGGATGCGG
CACCGGCCGAACATCGGGAAGCGAGGTGCCTCCaacaggagaaggaagcg
aggtgcctcgagaaggagaaggccccGCCATTCCGCCTTCATCGCGCTAC
CGACCGTGTTGTGAAAAAGCGGACCGGTACGACTCGGCGGAATGGAAGCT
TTCGCGCTTGGGTGGGAGCGCggcaggggatggggaaggggcaagcgacg
gaggaaggggagggagggtgatggaTTTGGCGACGTTTCGGTCCATGGAC
GATCCGATGGGCCCAGCCATGCTCATGTGTCTATACgcagacggggaagg
gaaagaccTGGGGCTTCAAGGGGACGACCGGGGGGTCACGCCCGGCGAGG
GGatcggggagggtgggggcgggcgcgtcAGCCTCAATCAAGTGTTTGAG
ACCATGTTCGTCTCCTGCGAGGAGTGGGCCCAGCTAGCGAGTACCCTGCG
GGTCATTCATGTCTACCTCTTTTTCGGGtgaATGGCTCCAGTGATCACAG
CGGGTAGTACTGCACTCTCTCTGCTGGATGGGCTGACCTGCGAGTGCTGC
AAAAGGGATAAGACAAAATGTAGTCGTCACTGGCCTTGTGCGcGATGCAT
ACGTCTGAAACAGCCCTGCGTCCTCTCTCAACGTCGCGTGTCCCGGTTGC
TCCAGTCGGGGGCGTGTTTTTCCACTAGTCGGctccaacccccccccccg
catgATCAAGGGGTTGGGGGAAGGTTTACGAgcgcgggaagagggatggg
CCTGGACAAACAGGTGCTCGCGGCAGCGCGGGACAACAGgcttctttcca
tcctccaGTGTCACGCCGGGGGAATGCGCGCCGCGGCTGCCCTTGTTGTC
GCGTTCCACCGGCTCTTGGCCGACGGTCGGGTCAACAGGGACCGGGCCAT
CAATACTCTGCACCTTTGGCACCGAGAGATACggcggatcggaacggacG
TGACGCTTGGGGCGTtcgagCAAATATGCCGAGCTCTGCAACTCAgagca
ggggaaaggaatgaaatCCTGGAGCTCTGTCGACCGCCGCGTCTGctgac
gtcctcctcgtcggaaAGTGGATGCGGCACCGGCCGAACATCGGGAAGCG
AGGTGCCTCCaacaggagaaggaagcgaggtgcctcgagaaggagaaggc
cccGCCATTCCGCCTTCATCGCGCTACCGACCGTGTTGTGAAAAAGCGGA
CCGGTACGACTCGGCGGAATGGAAGCTTTCGCGCTTGGGTGGGAGCGCgg
caggggatggggaaggggcaagcgacggaggaaggggagggagggtgatg
gaTTTGGCGACGTTTCGGTCCATGGACGATCCGATGGGCCCAGCCATGCT
CATGTGTCTATACgcagacggggaagggaaagaccTGGGGCTTCAAGGGG
ACGACCGGGGGGTCACGCCCGGCGAGGGGatcggggagggtgggggcggg
cgcgtcAGCCTCAATCAAGTGTTTGAGACCATGTTCGTCTCCTGCGAGGA
GTGGGCCCAGCTAGCGAGTACCCTGCGGGTCATTCATGTCTACCTCTTTT
TCGGGtgaATGGCTCCAGTGATCACAGCGGGTAGTACTGCACTCTCTCTG
CTGGATGGGCTGACCTGCGAGTGCTGCAAAAGGGATAAGACAAAATGTAG
TCGTCACTGGCCTTGTGCGcGATGCATACGTCTGAAACAGCCCTGCGTCC
TCTCTCAACGTCGCGTGTCCCGGTTGCTCCAGTCGGGGGCGTGTTTTTCC
ACTAGTCGGctccaacccccccccccgcatgATCAAGGGGTTGGGGGAAG
GTTTACGAgcgcgggaagagggatgggCCTGGACAAACAGGTGCTCGCGG
CAGCGCGGGACAACAGgcttctttccatcctccaGTGTCACGCCGGGGGA
ATGCGCGCCGCGGCTGCCCTTGTTGTCGCGTTCCACCGGCTCTTGGCCGA
CGGTCGGGTCAACAGGGACCGGGCCATCAATACTCTGCACCTTTGGCACC
GAGAGATACggcggatcggaacggacGTGACGCTTGGGGCGTtcgagCAA
ATATGCCGAGCTCTGCAACTCAgagcaggggaaaggaatgaaatCCTGGA
GCTCTGTCGACCGCCGCGTCTGctgacgtcctcctcgtcggaaAGTGGAT
GCGGCACCGGCCGAACATCGGGAAGCGAGGTGCCTCCaacaggagaagga
agcgaggtgcctcgagaaggagaaggccccGCCATTCCGCCTTCATCGCG
CTACCGACCGTGTTGTGAAAAAGCGGACCGGTACGACTCGGCGGAATGGA
AGCTTTCGCGCTTGGGTGGGAGCGCggcaggggatggggaaggggcaagc
gacggaggaaggggagggagggtgatggaTTTGGCGACGTTTCGGTCCAT
GGACGATCCGATGGGCCCAGCCATGCTCATGTGTCTATACgcagacgggg
aagggaaagaccTGGGGCTTCAAGGGGACGACCGGGGGGTCACGCCCGGC
GAGGGGatcggggagggtgggggcgggcgcgtcAGCCTCAATCAAGTGTT
TGAGACCATGTTCGTCTCCTGCGAGGAGTGGGCCCAGCTAGCGAGTACCC
TGCGGGTCATTCATGTCTACCTCTTTTTCGGGtga

Synonyms

Publications