EWM24849.1, cds5825 (CDS) Nannochloropsis gaditana

Overview
NameEWM24849.1
Unique Namecds5825
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:968366..968446 +
Alignment locationCM002466.1:968583..968612 +
Alignment locationCM002466.1:968873..969189 +
Alignment locationCM002466.1:969481..969541 +
Alignment locationCM002466.1:969742..970329 +

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Properties
Property NameValue
Protein idEWM24849.1
ProductZn(2)-C6 fungal-type DNA-binding domain protein
Orig transcript idgnl|cribi|Naga_100866g2.1200.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:968366..968446 +
CM002466.1supercontigCM002466.1:968583..968612 +
CM002466.1supercontigCM002466.1:968873..969189 +
CM002466.1supercontigCM002466.1:969481..969541 +
CM002466.1supercontigCM002466.1:969742..970329 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
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BLAST of EWM24849.1 vs. NCBI_GenBank
Match: gi|585106450|gb|EWM24849.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0
Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 0 
Query:    1 MAPVITAGSTALSLLDGLTCECCKRDKTKCSRHWPCARCIRLKQPCVLSQRRVSRLLQSGACFSTSRLQPPPPHDQGVGGRFTSAGRGMGLDKQVLAAARDNRLLSILQCHAGGMRAAAALVVAFHRLLADGRVNRDRAINTLHLWHREIRRIGTDVTLGAFEQICRALQLRAGERNEILELCRPPRLLTSSSSESGCGTGRTSGSEVPPTGEGSEVPREGEGPAIPPSSRYRPCCEKADRYDSAEWKLSRLGGSAAGDGEGASDGGRGGRVMDLATFRSMDDPMGPAMLMCLYADGEGKDLGLQGDDRGVTPGEGIGEGGGGRVSLNQVFETMFVSCEEWAQLASTLRVIHVYLFFG 358
            MAPVITAGSTALSLLDGLTCECCKRDKTKCSRHWPCARCIRLKQPCVLSQRRVSRLLQSGACFSTSRLQPPPPHDQGVGGRFTSAGRGMGLDKQVLAAARDNRLLSILQCHAGGMRAAAALVVAFHRLLADGRVNRDRAINTLHLWHREIRRIGTDVTLGAFEQICRALQLRAGERNEILELCRPPRLLTSSSSESGCGTGRTSGSEVPPTGEGSEVPREGEGPAIPPSSRYRPCCEKADRYDSAEWKLSRLGGSAAGDGEGASDGGRGGRVMDLATFRSMDDPMGPAMLMCLYADGEGKDLGLQGDDRGVTPGEGIGEGGGGRVSLNQVFETMFVSCEEWAQLASTLRVIHVYLFFG
Sbjct:    1 MAPVITAGSTALSLLDGLTCECCKRDKTKCSRHWPCARCIRLKQPCVLSQRRVSRLLQSGACFSTSRLQPPPPHDQGVGGRFTSAGRGMGLDKQVLAAARDNRLLSILQCHAGGMRAAAALVVAFHRLLADGRVNRDRAINTLHLWHREIRRIGTDVTLGAFEQICRALQLRAGERNEILELCRPPRLLTSSSSESGCGTGRTSGSEVPPTGEGSEVPREGEGPAIPPSSRYRPCCEKADRYDSAEWKLSRLGGSAAGDGEGASDGGRGGRVMDLATFRSMDDPMGPAMLMCLYADGEGKDLGLQGDDRGVTPGEGIGEGGGGRVSLNQVFETMFVSCEEWAQLASTLRVIHVYLFFG 358
The following BLAST results are available for this feature:
BLAST of EWM24849.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106450|gb|EWM24849.1|0.000e+0100.00Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5840rna5840Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications