rna5835, rna5835 (mRNA) Nannochloropsis gaditana

Overview
Namerna5835
Unique Namerna5835
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1421
Alignment locationCM002466.1:959473..960786 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100882g1.6798.mrna
Orig protein idgnl|cribi|Naga_100882g1.6798
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:959473..960786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100882g1gene5634Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5835rna5835-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24853.1cds5820Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5835 ID=rna5835|Name=rna5835|organism=Nannochloropsis gaditana|type=mRNA|length=1421bp
TTCTTCCTGCAGACAACGCGGCGAGAACCCCTCCGGCCCTATCTTCTCTG
CAAAGTTCGCGGCATTCGGCGGGCGCAGCAGGCCCTACAGGAGGCGACCG
CGGGGGGCACTGGCTGTGCGCCCAACAGTCGAGAGGAGAAACGAGCACGC
TGCGCGCGGGCCATGCCAGCTTGGGCGCGGGGGCGGGTGGGGAAGGGAGA
AGCTTTGCCTGTCTTCGACCTCAGGGGCGGTACCAGGGGGGGTGCGGGGG
GGGGAGGGGAGGGGGGAAAGGGGGAGGACGAGGGGAAGGAGGGAGGGAAG
GATGGAGGGAAGGTTGAGGAGGAGATCCTACGGGCCGTGTGTCAGTACGT
GGTGTCGCCCTTGTCGCCGGGCGGGGAGGGAGGGGGGGAGGGCGGGACAG
AGGAGAAGGGAGGGGGGGTGCAAGGGAAGGCGAAGGCTGGCCGTACGTCG
TCGGTCTTTTCTCGGCGTCCGAACAGCCGGCGGCCGCGGCGTATTATTTC
CTTTAAGAAATTGGCAAGCGAAGGGAAGAATGCGGCGGAAGCGATGGGGG
AGGAAGGGATGGAGGGAGGGGGGATGACGGAGGCTGTGTTCGAGGAGTTG
ATGATGCTTTTGGCGCCGGCCTGGGACCCGGCACGACGGGAGGGAGGGAG
GGAGGGAGGGGGGGGCATGGATGTCGGGGAATGAGGCCGTGGGGTGCATG
GACAGGGCGTGAAGGAGCGTGCTGATCGCGTGCCTGGTGAAGAAGAGGAT
GGAAACCCTGTGGGCCCCGCTGAGGGCTGGCCGGCCTAACAACCTCTACC
GTCAGTGTCCAGGTCGCGGTAAAGGCGTGTGGTCAAAGGGAAGGGAGGGA
AGGAGGGCGGGAGGGAGGCGTCGACGAAGCGAGGAAGGAGGGGGAGGAAG
AGGGAAGGAATGTGGGTTCGGCGTGGGGAAGGCAGGTTTTTTTGGCAGTC
GCCGCAGCACCGCAACGCCGCCGGGAGCCTACCTTGTATCGGGAATGACT
CTCTTCTTTACTCTACCATTCACGGCAACGGTTGATCTTCCCTCTTCCGT
GTCGAAGGACGTGAGGCGGTTGCGAAAGATGACTTGCCAGTTGTGTAAGC
GAAATTTTGAATGCCCGGAATCGGGCGACCGTTGAAATTATGATTTTGAA
ATCGAGGGTCCCGGAACCCTCTTGTGTCTGATGCAAAGCGCAGATGAAAA
GGAGCGGGAGCTTTTCCCTCGCTACCTTAACTTTTGAAGGTCATGAAATA
TGCGATAACAGCGTGTTGGCGATGAAGATCCATTTTGAGCGAGCCGTTAA
AGAAAGGTCGCCCTGGCCGTTACCAGAATCACACAAAATGATTGAATCCA
CCTTCAGGAAAGGAATGAACGAACGTCAAAGCTTTCTCCCCGCAAGAGGA
GGATCGATAAGGACATTTCCA
back to top

protein sequence of rna5835

>rna5835-protein ID=rna5835-protein|Name=rna5835|organism=Nannochloropsis gaditana|type=polypeptide|length=251bp
MPPTRSAPFLPHRKKLAMSLQPSGDNPPHLRSLECPEGGAGMETQAIFTA
CSKETGSTAHAISRQRHPAPFSPRLPGNAAQNFSILGLVPPSPMTTQAST
ASTCTTAEVSSSSSEGGDEDEDEEEEEEEEENKREGGRDGTAKLPQSSVL
GRGRWKGLKRSATVQDAVESQQREAGQTFLPPLPVEAIGGTSKKRRGPFP
SPGLTPELPASVCRKTGGRRRLSWRRQRRPGTSLSSRDSWNKARIQWHRT
R
back to top

mRNA from alignment at CM002466.1:959473..960786-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5835 ID=rna5835|Name=rna5835|organism=Nannochloropsis gaditana|type=mRNA|length=1314bp|location=Sequence derived from alignment at CM002466.1:959473..960786- (Nannochloropsis gaditana)
ATGCCCCCTACCCGGAGGTACATTGCGGGCATTAATACTGCCACTATCCT
TTGCCCGTATCCATGGTACGCGTGGACCTGAGTTCCCCGGTGTTGGGACC
AAAGAGTTGCCGGTAGTCGGCACAAGTGAGTGGTGTATTTTAATGTCCCA
TGCGAGGACCCGTTCTTTCAGAAGTCCTCAGCCCTGTACGGAATCCTCAC
CCCAAATGGAGGCACGCGCACAGGCTTGGGCACACACAGGTATCAAATGC
ACCGAGCAATCCACTGTATTGAACGCACTGTCTATCCTCATCTATATTGT
GCGTGCTTCAGGGTGGTCAATGGACCAAGGACTGTGGTTCACGGGACCTG
GTTTCTGCAGGCATACAGGCCAACCTCCCTCGTCACATTCACGAGGCTTT
GGCATTTAGCTCTGGCTAAGTTCCACTCTCTTCTCTTCACTCACATCACA
GCGCCCCTTTCTTGCCACATCGTAAAAAGCTGGCGATGTCGTTGCAGCCC
AGCGGGGACAATCCTCCTCATCTCCGCTCCCTAGAGTGCCCTGAAGGAGG
AGCAGGCATGGAGACACAGGCAATCTTCACAGCGTGCTCGAAAGAGACAG
GGTCTACAGCTCATGCGATCTCGAGGCAAAGACATCCTGCACCGTTCTCC
CCTCGTCTCCCGGGAAACGCTGCACAGAACTTTTCCATTTTAGGGCTGGT
ACCTCCCTCCCCCATGACGACGCAAGCGTCTACCGCCTCGACGTGCACCA
CGGCCGAAGTCTCCTCTTCTTCCTCGGAAGGGGGCGACGAGGATGAGGAT
GAAGAGGAGGAGGAGGAGGAAGAGGAGAACAAAAGGGAGGGAGGGCGGGA
CGGAACGGCAAAGCTGCCACAATCCAGCGTTCTAGGACGAGGAAGGTGGA
AGGGGCTAAAGAGGTCCGCGACCGTGCAGGACGCAGTGGAATCACAGCAG
AGGGAGGCAGGGCAGACATTCTTGCCCCCTCTACCTGTGGAAGCAATCGG
TGGCACGTCAAAGAAGAGGCGAGGACCTTTCCCGTCGCCAGGACTGACCC
CCGAGCTCCCTGCCTCTGTTTGTGGACCCTGCCCTCCCCACGTCCCAGAC
GACGCACAATGCCTCCCCCCTTCCCCTCCGCCCTCTCCCTCCCCTTCCTC
CTCGCCGTCCACTGCTCCCTGTCTCGCTTCCTCGCCCGCTGCCAGGTCGG
AAGACAGGTGGAAGGCGCAGGCTGTCTTGGAGGCGGCAGCGGCGGCCGGG
AACCTCGCTCTCGTCGCGCGACTCTTGGAACAAGGCGCGAATCCAGTGGC
ATCGAACCCGATGA
back to top

Coding sequence (CDS) from alignment at CM002466.1:959473..960786-

>rna5835 ID=rna5835|Name=rna5835|organism=Nannochloropsis gaditana|type=CDS|length=2268bp|location=Sequence derived from alignment at CM002466.1:959473..960786- (Nannochloropsis gaditana)
GTCGGAAGACAGGTGGAAGGCGCAGGCTGTCTTGGAGGCGGCAGCGGCGG
CCGGGAACCTCGCTCTCGTCGCGCGACTCTTGGAACAAGGCGCGAATCCA
GTGGCATCGAACCCGATGACGCCCCTTTCTTGCCACATCGTAAAAAGCTG
GCGATGTCGTTGCAGCCCAGCGGGGACAATCCTCCTCATCTCCGCTCCCT
AGAGTGCCCTGAAGGAGGAGCAGGCATGGAGACACAGGCAATCTTCACAG
CGTGCTCGAAAGAGACAGGGTCTACAGCTCATGCGATCTCGAGGCAAAGA
CATCCTGCACCGTTCTCCCCTCGTCTCCCGGGAAACGCTGCACAGAACTT
TTCCATTTTAGGGCTGGTACCTCCCTCCCCCATGACGACGCAAGCGTCTA
CCGCCTCGACGTGCACCACGGCCGAAGTCTCCTCTTCTTCCTCGGAAGGG
GGCGACGAGGATGAGGATGAAGAGGAGGAGGAGGAGGAAGAGGAGAACAA
AAGGGAGGGAGGGCGGGACGGAACGGCAAAGCTGCCACAATCCAGCGTTC
TAGGACGAGGAAGGTGGAAGGGGCTAAAGAGGTCCGCGACCGTGCAGGAC
GCAGTGGAATCACAGCAGAGGGAGGCAGGGCAGACATTCTTGCCCCCTCT
ACCTGTGGAAGCAATCGGTGGCACGTCAAAGAAGAGGCGAGGACCTTTCC
CGTCGCCAGGACTGACCCCCGAGCTCCCTGCCTCTGTTTATGCCCCCTAC
CCGGAGGTCGGAAGACAGGTGGAAGGCGCAGGCTGTCTTGGAGGCGGCAG
CGGCGGCCGGGAACCTCGCTCTCGTCGCGCGACTCTTGGAACAAGGCGCG
AATCCAGTGGCATCGAACCCGATGACGCCCCTTTCTTGCCACATCGTAAA
AAGCTGGCGATGTCGTTGCAGCCCAGCGGGGACAATCCTCCTCATCTCCG
CTCCCTAGAGTGCCCTGAAGGAGGAGCAGGCATGGAGACACAGGCAATCT
TCACAGCGTGCTCGAAAGAGACAGGGTCTACAGCTCATGCGATCTCGAGG
CAAAGACATCCTGCACCGTTCTCCCCTCGTCTCCCGGGAAACGCTGCACA
GAACTTTTCCATTTTAGGGCTGGTACCTCCCTCCCCCATGACGACGCAAG
CGTCTACCGCCTCGACGTGCACCACGGCCGAAGTCTCCTCTTCTTCCTCG
GAAGGGGGCGACGAGGATGAGGATGAAGAGGAGGAGGAGGAGGAAGAGGA
GAACAAAAGGGAGGGAGGGCGGGACGGAACGGCAAAGCTGCCACAATCCA
GCGTTCTAGGACGAGGAAGGTGGAAGGGGCTAAAGAGGTCCGCGACCGTG
CAGGACGCAGTGGAATCACAGCAGAGGGAGGCAGGGCAGACATTCTTGCC
CCCTCTACCTGTGGAAGCAATCGGTGGCACGTCAAAGAAGAGGCGAGGAC
CTTTCCCGTCGCCAGGACTGACCCCCGAGCTCCCTGCCTCTGTTTATGCC
CCCTACCCGGAGGTCGGAAGACAGGTGGAAGGCGCAGGCTGTCTTGGAGG
CGGCAGCGGCGGCCGGGAACCTCGCTCTCGTCGCGCGACTCTTGGAACAA
GGCGCGAATCCAGTGGCATCGAACCCGATGACGCCCCTTTCTTGCCACAT
CGTAAAAAGCTGGCGATGTCGTTGCAGCCCAGCGGGGACAATCCTCCTCA
TCTCCGCTCCCTAGAGTGCCCTGAAGGAGGAGCAGGCATGGAGACACAGG
CAATCTTCACAGCGTGCTCGAAAGAGACAGGGTCTACAGCTCATGCGATC
TCGAGGCAAAGACATCCTGCACCGTTCTCCCCTCGTCTCCCGGGAAACGC
TGCACAGAACTTTTCCATTTTAGGGCTGGTACCTCCCTCCCCCATGACGA
CGCAAGCGTCTACCGCCTCGACGTGCACCACGGCCGAAGTCTCCTCTTCT
TCCTCGGAAGGGGGCGACGAGGATGAGGATGAAGAGGAGGAGGAGGAGGA
AGAGGAGAACAAAAGGGAGGGAGGGCGGGACGGAACGGCAAAGCTGCCAC
AATCCAGCGTTCTAGGACGAGGAAGGTGGAAGGGGCTAAAGAGGTCCGCG
ACCGTGCAGGACGCAGTGGAATCACAGCAGAGGGAGGCAGGGCAGACATT
CTTGCCCCCTCTACCTGTGGAAGCAATCGGTGGCACGTCAAAGAAGAGGC
GAGGACCTTTCCCGTCGCCAGGACTGACCCCCGAGCTCCCTGCCTCTGTT
TATGCCCCCTACCCGGAG
back to top
Synonyms
Publications