rna583, rna583 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna583
Unique Name	rna583
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2741
Alignment location	CM002455.1:1458485..1459892 +

Link to JBrowse

Properties


Property Name	Value
Product	FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Orig transcript id	gnl\|cribi\|Naga_100729g3.10072.mrna
Orig protein id	gnl\|cribi\|Naga_100729g3.10072
Gene	NDA
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1458485..1459892 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NDA	gene560	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna583	rna583-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30088.1	cds583	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1458485..1459892+
coding sequence from alignment at CM002455.1:1458485..1459892+

mRNA sequence

>rna583 ID=rna583|Name=rna583|organism=Nannochloropsis gaditana|type=mRNA|length=2741bp
GATGCAAACACCTCACCAGGCCTTGACCATTAAACAAGCACGATTTCTTC
AGGCCCAACACTTATCTTTGAAAAAAGTCAGAAATTTTGCGCTACATGCA
CGTAGAAATGCAGATGGAGCTTTTTTGTTCAATCATCCTTCCTTCTTTCT
GTTGCAGAGGGCTGATAGAAGAGCTCGTATCTCCGGAGCAGTCACCACAC
ATTGCACTTTCCAGACGCGGTTGCATTGATGTCTGGGCCGGAATCCTCCG
CTGCTATTGAGCCTCTAAGGCAGCTTGGCATCATGCCTGCCTTGATTGCG
GGATGGTCGGCCTTTCCTGCTTTTATGTTGTTATTGACCTCTCAGCTAAA
TCACCTTTATACTCAATTTGCACCGTTCCTGTTAAGCATCGAAATGGAGC
CGCAAAATCTGTCATCATTTCTCATCATAACATTCCGAGTGCTACTACTG
CTCTTTTGTTGCCGAAACATGATCGCCTTTTCCTGGGATGTTTTCGTTGA
TTCGGTGAGACAATATCCGACCATGAACCCCTTGTTATTTCGAAACAGCC
AAAAAGCGGCACGTGCTCTGGGCTGTGGATCATTCCCGGCTCGCCTTATG
GTATTGCTGCATCTGACTAGTGCTATTTCATTGATCTGCGCCTTGCGGCT
TGCAAGACGCTTCAAGGTCATAAACACGGAGAATTTCAACGAACAGCGTA
TTTTTCTTCGATTTACCTTCAATCTTATTCTCAAAACACTATATTTCATA
AATGTCTTCCCAAACTATCAACTAAATGTACTGAAAAGCTTTTTTTCGGT
TTACGTTTCCTTCTCGGATGTATTGCTTGTTTCTTGGATACTCCGTTCTG
ACATCGGTTGCCTTACCAATAATCCCGGCATACAAAAGGCTTATCCCTGG
GGTGAGGCGAATGAAGAATACCAGCGGCAAATACTGACCCTCAATTTTCT
CCTTTTGGTGATTGTAAATGTGTTACCTTTTTGTCTTTTTTCGATTTTGA
TGTGCAGAAAAGGAGTTAAAGTGTTGGAAGAACCCCAAGACTGGACAGTT
GTTATGAGAAGTATCCGATTCGGAGTCGCACTCTGGATTGACTTGAAAAG
CAACATTGGGAGAGCACTTCGGTGGCTTGTCCAACCATATCGGGGACAGG
CCTCGTTGATAGAGATGGTGACGTCGTTTATATTGCCGGTATGTGGAGTA
CTTTTTATATTTTTAATGGTTGAAGCTCCACGGAGAGCAACGATTTGGAC
CTGCCTTCGGCTAGCAATAGGAATACACTTCAATATCTTGTACAAATACC
AAGTACAAGCGACGCGTTGGGGCCGACGCGGCAGTTTCTTCCAGCATGGC
ATCGACGTGGTTATTTTCCTCCCACTCGCTTCAATTTTAGCGGTAGCAGT
ACTCAAGGCCTGGGGTCGCAGGTATGATTTCACTCGAGCTCTCAAGTTGC
CGGGGCAGCAAAATCGTCCAGCTTCGTTCTTCCGCGTGGCAGGCGGTGCT
CAATGTGTAAAAATTTCTTCCATCATGGGAACTTTGGAACTCTCACGCAC
AAATGTTCGTGATGAAGTTGAAGCATGTGCGGTCTCTGCATTCCGGGCTA
GCCACCCGTCATACACTTTTTGCAACACCTCAATTGGGGGGGCAAGCCTT
CTCGACTACTCTCTGATATCGCTCTTGAGCTACCTGGACAAGGATAGCAG
TGATTTTCATGCCTTGTTCGATCCAATGGCGGCAACAGACGATTGGGAAT
TAGAGCATGAGGATGCTTGGGGCCCGGCGACCCAAGATACAAGCCAAAAT
GACGATACAGCTATGGTGGCAGTGACAGGCATCCCACGGGCACGTGTCTT
ACAGCTTTTCTCTCCAAGTCGGAATTTGAGTGTCATTGCAGTAGCAGGAA
CCAATCCACTCCGACCTTATGACATTTTTCAGGACGTGTTATTGTTTCAT
CGGGCATTTACATTTGAACTTGCCTCTCAATTCAGCCCACCTTTGAAATG
GATTCCACAGAAATGGAAGTCTTTTATCTTGTCCCTAAGCTCTCTACCTC
TGCATCTGCTGGGCTCAACCAATCCGTATTGGTATTATCACCACACTCTC
ATTGAAGAAGTTAAGGCCCAGCAACGGCGTAAAGGCATAGGAAGAGTAGT
ACTTACAGGCCATTCCCTTGGGGGAGCCATAGCTCAGATTGTGGCCGCCG
GTGCTCACGTTCCTGTCGTGTCAATCTCTTCCCCGGGAGTTTCCTTGTTA
TTGAGCAGCCTCGGCATTGATCCTGAACCGCTTAAGTACTTAAGCGTCAA
CGTCGTACACGAAAATGATGTTTTACCTATGCTCGACAAGCTGATGGGTA
CCGTCTTCATCCTGGGCTGTGGGTCCGCGAATCCGTTTCGGTGTCATCAG
CCTGGCCAGACAATTTGCGAGCTCTTGAGCCATTGTAAAGGTTCGAGTGC
TTTTATACAGTGCCGTCTATATCAGGCATGACTGAATGGTATAGGTACGA
AGCTTCTGACGGAGCAAGGAGGGACCAATGATCACGAAAATTATCCTTTT
GAAAGTGAACCAGTCTGCCAGAGGATAATCGAGGTAAGAGGGAGAGAGCA
TGTAAGAATGTAAAAGGGAACAAATAGACAATCGCTTCAGAAATTTATAC
GATAAATCTTTGATTTGTACGAAGAGCAAGTAGGCAAGGGCGATGCCGAT
GACACGCCTGACCACTGTCGTTAACCTTAAAATATCACACC

protein sequence of rna583

>rna583-protein ID=rna583-protein|Name=rna583|organism=Nannochloropsis gaditana|type=polypeptide|length=254bp
MAMREAGKLTMRSRRLQVRGKDKHSLRWQDRTRILFSPFSLSLRRYTTLS
AADTTATADIFEGLTKNKKAYTAIYKRDARPPVVILGSGWAGFQLARDLN
KAKFDVTVISDRNHFLFTPLLPSTTVGTLEFRTIQEPVRTIPGIKFYQAR
ATRLNFEERQVACEEYYLKERFEVNYEYLILAVGSTTNTFNVPGVCPDNH
VYFLKQLSDARAIRSRIIECFERASYPDLPSAAQARLLSFLVVGGGAHIC
GVCE

mRNA from alignment at CM002455.1:1458485..1459892+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna583 ID=rna583|Name=rna583|organism=Nannochloropsis gaditana|type=mRNA|length=1408bp|location=Sequence derived from alignment at CM002455.1:1458485..1459892+ (Nannochloropsis gaditana)
ATGGCGATGCGTGAAGCCGGCAAGTTGACGATGAGGAGTCGGAGGCTGCA
AgtaagagggaaggacaagcATAGCTTACGTTGGCAGGACAGAACGAGAA
TTCTATTctcgcccttctctctctcgttACGACGGTACGTGCTGGGAACA
CCATGGAGGTGCATGGCGGCTTTTGAATGCTGGTATTCCAGTAGCCCTCG
TGTACGGAACACGGATAGCTCTTCCCACTCCTCTTGGCACCCGTACGGCA
CAGTTATACTACTTTAAGCGCCGCGGACACCACCGCGACCGCAGACATCT
TTGAAGGCTTGACCAAGAACAAAAAAGCCTACACCGCCATATACAAACGC
gatgcccgcccccccgtgGTCATCCTTGGAAGTGGATGGGCCGGTTTCCA
ACTTGCCCGGGACCTGAACAAGGCCAAATTCGATGTGACAGTCATCAGCG
ACCGCAAtcatttcctcttcactCCCCTTCTGCCCTCCACGACTGTGGGA
ACGCTTGAGTTTCGGACCATACAGGAGCCCGTACGGACCATCCCCGGGAT
TAAATTCTATCAAGGTACGGGCGATGACGTGAtagtggtgggagaggcag
tGACAGGGCACTGAGATATCCACTGGGAGAGATAGAGATTTTTCGCTGGC
CAGAGACATACATTCCGATTCCTTCGATTGCCTGccatggagaaggacgt
gTCGGGAGGTTATGGAGAGTTGAGAGTGGGCGGAAGGGGTATAGCCCGCC
GGAGAGAGCGTGGCAATGCTGAAAGAAGAGCGACGATTGCTGAGTCATTT
CGGTCAATGAATGAGCCCTCCCGGCGTTTGGGCACAGTCTTCCAGCAGAG
GATTTGATCCCCTGTACGGCACATGAAAAGTCCAACAGAAGCGTCTCGGT
AGCCTCTAACCCActgcctcgtccttcccatGTTTATATTCCCACCAGCG
CGTGCCACACGCCTGAATTTTGAGGAGAGACAAGTGGCCTGCGAGGAGTA
TTACCTAAAGGAGCGCTTCGAAGTCAACTATGAATATTTGATCCTGGCGG
TGGGGAGCACCACGAACACCTTCAACGTCCCCGGGGTCTGCCCGGACAAT
CACGTATATTTCCTCAAGCAGCTCAGGTGGGGCACGAGGGTGATAGAGGG
CATGTATTTCACGTGCAATCAAGGTCGATGACACCGCCGGGCTCGATCCG
GTGCTCAAactgccttccttttccctatctcccccctccatgctcctTGG
GTATGCTCCCTCCAAGCGACGCGCGGGCCATTCGGTCCCGGATCATCGAA
TGTTTTGAGCGTGCCTCTTACCCAGACTTACCGTCTGCAGCACAGGCCCG
gcttctctccttcctggttgtgggggggggggcccaCATCTGTGGAGTTT
GCGAGTGA

Coding sequence (CDS) from alignment at CM002455.1:1458485..1459892+

>rna583 ID=rna583|Name=rna583|organism=Nannochloropsis gaditana|type=CDS|length=3060bp|location=Sequence derived from alignment at CM002455.1:1458485..1459892+ (Nannochloropsis gaditana)
ATGGCGATGCGTGAAGCCGGCAAGTTGACGATGAGGAGTCGGAGGCTGCA
AgtaagagggaaggacaagcATAGCTTACGTTGGCAGGACAGAACGAGAA
TTCTATTctcgcccttctctctctcgttACGACGTTATACTACTTTAAGC
GCCGCGGACACCACCGCGACCGCAGACATCTTTGAAGGCTTGACCAAGAA
CAAAAAAGCCTACACCGCCATATACAAACGCgatgcccgcccccccgtgG
TCATCCTTGGAAGTGGATGGGCCGGTTTCCAACTTGCCCGGGACCTGAAC
AAGGCCAAATTCGATGTGACAGTCATCAGCGACCGCAAtcatttcctctt
cactCCCCTTCTGCCCTCCACGACTGTGGGAACGCTTGAGTTTCGGACCA
TACAGGAGCCCGTACGGACCATCCCCGGGATTAAATTCTATCAAGCGCGT
GCCACACGCCTGAATTTTGAGGAGAGACAAGTGGCCTGCGAGGAGTATTA
CCTAAAGGAGCGCTTCGAAGTCAACTATGAATATTTGATCCTGGCGGTGG
GGAGCACCACGAACACCTTCAACGTCCCCGGGGTCTGCCCGGACAATCAC
GTATATTTCCTCAAGCAGCTCAGCGACGCGCGGGCCATTCGGTCCCGGAT
CATCGAATGTTTTGAGCGTGCCTCTTACCCAGACTTACCGTCTGCAGCAC
AGGCCCGgcttctctccttcctggttgtgggggggggggcccaCATCTGT
GGAGTTTGCGAGTGAATGGCGATGCGTGAAGCCGGCAAGTTGACGATGAG
GAGTCGGAGGCTGCAAgtaagagggaaggacaagcATAGCTTACGTTGGC
AGGACAGAACGAGAATTCTATTctcgcccttctctctctcgttACGACGT
TATACTACTTTAAGCGCCGCGGACACCACCGCGACCGCAGACATCTTTGA
AGGCTTGACCAAGAACAAAAAAGCCTACACCGCCATATACAAACGCgatg
cccgcccccccgtgGTCATCCTTGGAAGTGGATGGGCCGGTTTCCAACTT
GCCCGGGACCTGAACAAGGCCAAATTCGATGTGACAGTCATCAGCGACCG
CAAtcatttcctcttcactCCCCTTCTGCCCTCCACGACTGTGGGAACGC
TTGAGTTTCGGACCATACAGGAGCCCGTACGGACCATCCCCGGGATTAAA
TTCTATCAAGCGCGTGCCACACGCCTGAATTTTGAGGAGAGACAAGTGGC
CTGCGAGGAGTATTACCTAAAGGAGCGCTTCGAAGTCAACTATGAATATT
TGATCCTGGCGGTGGGGAGCACCACGAACACCTTCAACGTCCCCGGGGTC
TGCCCGGACAATCACGTATATTTCCTCAAGCAGCTCAGCGACGCGCGGGC
CATTCGGTCCCGGATCATCGAATGTTTTGAGCGTGCCTCTTACCCAGACT
TACCGTCTGCAGCACAGGCCCGgcttctctccttcctggttgtggggggg
ggggcccaCATCTGTGGAGTTTGCGAGTGAATGGCGATGCGTGAAGCCGG
CAAGTTGACGATGAGGAGTCGGAGGCTGCAAgtaagagggaaggacaagc
ATAGCTTACGTTGGCAGGACAGAACGAGAATTCTATTctcgcccttctct
ctctcgttACGACGTTATACTACTTTAAGCGCCGCGGACACCACCGCGAC
CGCAGACATCTTTGAAGGCTTGACCAAGAACAAAAAAGCCTACACCGCCA
TATACAAACGCgatgcccgcccccccgtgGTCATCCTTGGAAGTGGATGG
GCCGGTTTCCAACTTGCCCGGGACCTGAACAAGGCCAAATTCGATGTGAC
AGTCATCAGCGACCGCAAtcatttcctcttcactCCCCTTCTGCCCTCCA
CGACTGTGGGAACGCTTGAGTTTCGGACCATACAGGAGCCCGTACGGACC
ATCCCCGGGATTAAATTCTATCAAGCGCGTGCCACACGCCTGAATTTTGA
GGAGAGACAAGTGGCCTGCGAGGAGTATTACCTAAAGGAGCGCTTCGAAG
TCAACTATGAATATTTGATCCTGGCGGTGGGGAGCACCACGAACACCTTC
AACGTCCCCGGGGTCTGCCCGGACAATCACGTATATTTCCTCAAGCAGCT
CAGCGACGCGCGGGCCATTCGGTCCCGGATCATCGAATGTTTTGAGCGTG
CCTCTTACCCAGACTTACCGTCTGCAGCACAGGCCCGgcttctctccttc
ctggttgtgggggggggggcccaCATCTGTGGAGTTTGCGAGTGAATGGC
GATGCGTGAAGCCGGCAAGTTGACGATGAGGAGTCGGAGGCTGCAAgtaa
gagggaaggacaagcATAGCTTACGTTGGCAGGACAGAACGAGAATTCTA
TTctcgcccttctctctctcgttACGACGTTATACTACTTTAAGCGCCGC
GGACACCACCGCGACCGCAGACATCTTTGAAGGCTTGACCAAGAACAAAA
AAGCCTACACCGCCATATACAAACGCgatgcccgcccccccgtgGTCATC
CTTGGAAGTGGATGGGCCGGTTTCCAACTTGCCCGGGACCTGAACAAGGC
CAAATTCGATGTGACAGTCATCAGCGACCGCAAtcatttcctcttcactC
CCCTTCTGCCCTCCACGACTGTGGGAACGCTTGAGTTTCGGACCATACAG
GAGCCCGTACGGACCATCCCCGGGATTAAATTCTATCAAGCGCGTGCCAC
ACGCCTGAATTTTGAGGAGAGACAAGTGGCCTGCGAGGAGTATTACCTAA
AGGAGCGCTTCGAAGTCAACTATGAATATTTGATCCTGGCGGTGGGGAGC
ACCACGAACACCTTCAACGTCCCCGGGGTCTGCCCGGACAATCACGTATA
TTTCCTCAAGCAGCTCAGCGACGCGCGGGCCATTCGGTCCCGGATCATCG
AATGTTTTGAGCGTGCCTCTTACCCAGACTTACCGTCTGCAGCACAGGCC
CGgcttctctccttcctggttgtgggggggggggcccaCATCTGTGGAGT
TTGCGAGTGA

Synonyms

Publications