EWM30088.1, cds583 (CDS) Nannochloropsis gaditana

Overview
NameEWM30088.1
Unique Namecds583
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1458485..1458618 +
Alignment locationCM002455.1:1458738..1459048 +
Alignment locationCM002455.1:1459433..1459610 +
Alignment locationCM002455.1:1459751..1459892 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30088.1
ProductFAD-dependent pyridine nucleotide-disulfide oxidoreductase
Orig transcript idgnl|cribi|Naga_100729g3.10072.mrna
GeneNDA
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1458485..1458618 +
CM002455.1supercontigCM002455.1:1458738..1459048 +
CM002455.1supercontigCM002455.1:1459433..1459610 +
CM002455.1supercontigCM002455.1:1459751..1459892 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR023753Pyr_nucl-diS_OxRdtase_FAD/NAD
Homology
BLAST of EWM30088.1 vs. NCBI_GenBank
Match: gi|585112728|gb|EWM30088.1| (FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Nannochloropsis gaditana])

HSP 1 Score: 527.324 bits (1357), Expect = 0.000e+0
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0
Query:    1 MAMREAGKLTMRSRRLQVRGKDKHSLRWQDRTRILFSPFSLSLRRYTTLSAADTTATADIFEGLTKNKKAYTAIYKRDARPPVVILGSGWAGFQLARDLNKAKFDVTVISDRNHFLFTPLLPSTTVGTLEFRTIQEPVRTIPGIKFYQARATRLNFEERQVACEEYYLKERFEVNYEYLILAVGSTTNTFNVPGVCPDNHVYFLKQLSDARAIRSRIIECFERASYPDLPSAAQARLLSFLVVGGGAHICGVCE 254
            MAMREAGKLTMRSRRLQVRGKDKHSLRWQDRTRILFSPFSLSLRRYTTLSAADTTATADIFEGLTKNKKAYTAIYKRDARPPVVILGSGWAGFQLARDLNKAKFDVTVISDRNHFLFTPLLPSTTVGTLEFRTIQEPVRTIPGIKFYQARATRLNFEERQVACEEYYLKERFEVNYEYLILAVGSTTNTFNVPGVCPDNHVYFLKQLSDARAIRSRIIECFERASYPDLPSAAQARLLSFLVVGGGAHICGVCE
Sbjct:    1 MAMREAGKLTMRSRRLQVRGKDKHSLRWQDRTRILFSPFSLSLRRYTTLSAADTTATADIFEGLTKNKKAYTAIYKRDARPPVVILGSGWAGFQLARDLNKAKFDVTVISDRNHFLFTPLLPSTTVGTLEFRTIQEPVRTIPGIKFYQARATRLNFEERQVACEEYYLKERFEVNYEYLILAVGSTTNTFNVPGVCPDNHVYFLKQLSDARAIRSRIIECFERASYPDLPSAAQARLLSFLVVGGGAHICGVCE 254          
BLAST of EWM30088.1 vs. NCBI_GenBank
Match: gi|553185261|ref|XP_005854223.1| (NADH dehydrogenase [Nannochloropsis gaditana CCMP526] >gi|422294837|gb|EKU22137.1| NADH dehydrogenase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 344.354 bits (882), Expect = 6.408e-115
Identity = 171/206 (83.01%), Postives = 178/206 (86.41%), Query Frame = 0
Query:   46 YTTLSAADTTATADIFEGLTKNKKAYTAIYKRDARPPVVILGSGWAGFQLARDLNKAKFDVTVISDRNHFLFTPLLPSTTVGTLEFRTIQEPVRTIPGIKFYQARATRLNFEERQVACEEYYLKERFEVNYEYLILAVGSTTNTFNVPGVCPDNHVYFLKQLSDARAIRSRIIECFERASYPDLPSAAQARLLSFLVVGGGAHICG 251
            YTTLSAADTTATADIFEGLTKNKKAYTAIYKRDARPPVVILGSGWAGFQLARDLNKAKFDVTVISDRNHFLFTPLLPSTTVGTLEFRTIQEPVRTIPGIKFYQARATRLNFEERQVACEEYYLKERFEVNYEYLILAVGSTTNTFNVPGVCPDNHVYFLKQLS+      + +       YPDL       ++S  ++    HI G
Sbjct:    9 YTTLSAADTTATADIFEGLTKNKKAYTAIYKRDARPPVVILGSGWAGFQLARDLNKAKFDVTVISDRNHFLFTPLLPSTTVGTLEFRTIQEPVRTIPGIKFYQARATRLNFEERQVACEEYYLKERFEVNYEYLILAVGSTTNTFNVPGVCPDNHVYFLKQLSELYDFLRKDVHIL----YPDL-----EHMVSVTLIEASDHILG 205          
BLAST of EWM30088.1 vs. NCBI_GenBank
Match: gi|299116714|emb|CBN76274.1| (NADH dehydrogenase (ubiquinone) (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 216.083 bits (549), Expect = 2.036e-65
Identity = 97/164 (59.15%), Postives = 130/164 (79.27%), Query Frame = 0
Query:   83 VVILGSGWAGFQLARDLNKAKFDVTVISDRNHFLFTPLLPSTTVGTLEFRTIQEPVRTIPGIKFYQARATRLNFEERQVACEEYYLKERFEVNYEYLILAVGSTTNTFNVPGVCPDNHVYFLKQLSDARAIRSRIIECFERASYPDLPSAAQARLLSFLVVGGG 246
            +VILG+GW GF++AR+++K K+DVTVIS RNHFLFTPLLPSTTVGTLEFR IQEPVRTI G+++ QA    ++F+ + + C+E +     EV+Y+ L++A G+  NTF VPGV  +NHV+FLKQL DAR IR+R++ECFERA+ P +    ++RLLSF+VVGGG
Sbjct:   20 LVILGTGWGGFRVAREVDKKKYDVTVISPRNHFLFTPLLPSTTVGTLEFRCIQEPVRTIKGLQYLQASVLSVDFKSKTLRCQEVFKGTEHEVDYDSLVIATGAQNNTFGVPGVSEENHVFFLKQLGDARNIRNRLLECFERAASPFISEEERSRLLSFVVVGGG 183          
BLAST of EWM30088.1 vs. NCBI_GenBank
Match: gi|224013718|ref|XP_002296523.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220968875|gb|EED87219.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 200.675 bits (509), Expect = 1.138e-58
Identity = 100/171 (58.48%), Postives = 121/171 (70.76%), Query Frame = 0
Query:   83 VVILGSGWAGFQLARDLNKAKFDVTVISDRNHFLFTPLLPSTTVGTLEFRTIQEPVRTIPGI-KFYQARATRLNFEERQVACEEYYLKERFEVNYEYLILAVGSTTNTFNVPGV--CPDNHVYFLKQLSDARAIRSRIIECFERASYPDLPSAAQARLLSFLVVGGGAHIC 250
            VVILGSGW G+ LAR L K  FDV V+S  NHFLFTPLLPST VGTLEFR IQEPVRTI G+  +YQA+AT ++ E R V CE+ Y   +F+V Y+YL++A G  +NTFN   +       V+FLK L  AR IR+RI+ECFERAS P +P   + RLLSF+VVGGG   C
Sbjct:    2 VVILGSGWGGYTLARRLQKELFDVRVVSPANHFLFTPLLPSTAVGTLEFRAIQEPVRTIKGLGHYYQAKATNIDLENRVVTCEDLYKGVKFDVAYDYLVVAAGKKSNTFNTHNIQRLEGVVVFFLKHLYHARQIRNRIVECFERASNPTIPDVQRDRLLSFIVVGGGPTSC 172          
BLAST of EWM30088.1 vs. NCBI_GenBank
Match: gi|1072228116|gb|OEU12854.1| (FAD/NAD(P)-binding domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 200.675 bits (509), Expect = 2.819e-58
Identity = 98/178 (55.06%), Postives = 130/178 (73.03%), Query Frame = 0
Query:   78 DARPPVVILGSGWAGFQLARDLNKAKFDVTVISDRNHFLFTPLLPSTTVGTLEFRTIQEPVRTIPGI-KFYQARATRLNFEERQVACEEYYLKERFEVNYEYLILAVGSTTNTFNVPGVCPDNH----VYFLKQLSDARAIRSRIIECFERASYPDLPSAAQARLLSFLVVGGGAHIC 250
            + +P +VILG+GW G+ LA  L+K KFDV VIS  NHFLFTPLLP T VGTLEFR IQEPVRTI G+ ++YQA+A  L+   + + C++ + KE F++ Y++LI+A G+ TNTFN+ G+  D+H    V FLK L  AR IR+RI+ECFERAS P++  + + RLLSF+VVGGG   C
Sbjct:   20 NNKPRIVILGTGWGGYTLANRLDKNKFDVRVISPANHFLFTPLLPGTAVGTLEFRAIQEPVRTIRGLGEYYQAKARTLDTTSKTITCQDIFKKELFDIQYDFLIIATGNKTNTFNIEGI--DSHEGKSVLFLKHLYHARQIRNRILECFERASNPNISVSERQRLLSFIVVGGGPTSC 195          
BLAST of EWM30088.1 vs. NCBI_GenBank
Match: gi|1210518898|dbj|GAX22180.1| (hypothetical protein FisN_19Lh240 [Fistulifera solaris])

HSP 1 Score: 189.119 bits (479), Expect = 4.487e-53
Identity = 97/181 (53.59%), Postives = 124/181 (68.51%), Query Frame = 0
Query:   76 KRDARPPVVILGSGWAGFQLARDLNKAKFDVTVISDRNHFLFTPLLPSTTVGTLEFRTIQEPVRTIPGI-KFYQARATRLNFEERQ---VACEEYYLKERFEVNYEYLILAVGSTTNTFNVPGVC--PDNHVYFLKQLSDARAIRSRIIECFERASYPDLPSAAQARLLSFLVVGGGAHIC 250
            K+  +P VVILGSGWAG  LAR L+K K+DV +IS  NHFLFT LLPST VGTLEFR IQEPVRTI G+ ++YQA+A +L   +     V C + +    F V Y+YL++A G+ TNTF  PG+       V+FLK L  AR IR+R++ECFERAS P++    + RLLSF++VGGG   C
Sbjct:   39 KKTKKPRVVILGSGWAGNTLARRLDKQKYDVRLISPANHFLFTSLLPSTAVGTLEFRAIQEPVRTIAGLGEYYQAKALQLGVTDEGKTVVHCADLFKGHEFPVRYDYLVVAAGNKTNTFQTPGIAEREGKEVFFLKHLYHARQIRNRVLECFERASNPNITDFERDRLLSFVIVGGGPTSC 219          
BLAST of EWM30088.1 vs. NCBI_GenBank
Match: gi|1210521666|dbj|GAX19656.1| (hypothetical protein FisN_19Hh240 [Fistulifera solaris])

HSP 1 Score: 187.193 bits (474), Expect = 1.727e-52
Identity = 97/177 (54.80%), Postives = 121/177 (68.36%), Query Frame = 0
Query:   80 RPPVVILGSGWAGFQLARDLNKAKFDVTVISDRNHFLFTPLLPSTTVGTLEFRTIQEPVRTIPGI-KFYQARATRLNFEERQ---VACEEYYLKERFEVNYEYLILAVGSTTNTFNVPGVC--PDNHVYFLKQLSDARAIRSRIIECFERASYPDLPSAAQARLLSFLVVGGGAHIC 250
            +P VVILGSGWAG  LAR L+K K+DV +IS  NHFLFT LLPST VGTLEFR IQEPVRTI G+ ++YQA+A  L   E     V C + +    F V Y+YL++A G+ TNTF  PG+       V+FLK L  AR IR+R++ECFERAS P++    + RLLSF++VGGG   C
Sbjct:   34 KPRVVILGSGWAGNTLARRLDKQKYDVRLISPANHFLFTSLLPSTAVGTLEFRAIQEPVRTIAGLGEYYQAKALSLGVTEEGKTVVHCADLFKGHEFPVRYDYLVVAAGNKTNTFQTPGIAEREGKEVFFLKHLYHARQIRNRVLECFERASNPNITDFERDRLLSFVIVGGGPTSC 210          
BLAST of EWM30088.1 vs. NCBI_GenBank
Match: gi|727152675|emb|CEG65173.1| (hypothetical protein RMATCC62417_02009 [Rhizopus microsporus])

HSP 1 Score: 182.956 bits (463), Expect = 3.631e-52
Identity = 90/173 (52.02%), Postives = 124/173 (71.68%), Query Frame = 0
Query:   78 DARPPVVILGSGWAGFQLARDLNKAKFDVTVISDRNHFLFTPLLPSTTVGTLEFRTIQEPVRTIP-GIKFYQARATRLNFEERQVACE---EYYLKERFEVNYEYLILAVGSTTNTFNVPGVCPDNHVYFLKQLSDARAIRSRIIECFERASYPDLPSAAQARLLSFLVVGGG 246
            + +  V+ILGSGWAGF+L RDL+K K+DV+V+S RN+F+FTPLL ST+VGTLEFR I EPVR+    IK++QA    ++ + R   C    +   ++RF ++Y+ LI+AVGS +NTF +PGV   +H +FLK ++DAR IR R+IECFE AS P +    +A LL F+VVGGG
Sbjct:   72 ETKEKVIILGSGWAGFKLMRDLDKEKYDVSVVSPRNYFVFTPLLASTSVGTLEFRCITEPVRSYSKNIKYHQAYCDEIDLDSRVAHCTYNVDDIQQKRFTLDYDKLIIAVGSYSNTFGIPGV--KDHAFFLKDVNDARKIRKRLIECFENASQPGVSDKDKADLLHFVVVGGG 242          
BLAST of EWM30088.1 vs. NCBI_GenBank
Match: gi|727140788|emb|CEG76776.1| (hypothetical protein RMATCC62417_11628 [Rhizopus microsporus])

HSP 1 Score: 181.8 bits (460), Expect = 6.046e-52
Identity = 89/173 (51.45%), Postives = 124/173 (71.68%), Query Frame = 0
Query:   78 DARPPVVILGSGWAGFQLARDLNKAKFDVTVISDRNHFLFTPLLPSTTVGTLEFRTIQEPVRTIP-GIKFYQARATRLNFEERQVACE---EYYLKERFEVNYEYLILAVGSTTNTFNVPGVCPDNHVYFLKQLSDARAIRSRIIECFERASYPDLPSAAQARLLSFLVVGGG 246
            + +  V+ILGSGWAGF+L RDL+K ++DV+V+S RN+F+FTPLL ST+VGTLEFR I EPVR+    IK++QA    ++ + R   C    +   ++RF ++Y+ LI+AVGS +NTF +PGV   +H +FLK ++DAR IR R+IECFE AS P +    +A LL F+VVGGG
Sbjct:   72 ETKEKVIILGSGWAGFKLMRDLDKERYDVSVVSPRNYFVFTPLLASTSVGTLEFRCITEPVRSYSKNIKYHQAYCDEIDLDSRVAHCTYNVDDIQQKRFTLDYDKLIIAVGSYSNTFGIPGV--KDHAFFLKDVNDARKIRKRLIECFENASQPGVSDKDKADLLHFVVVGGG 242          
BLAST of EWM30088.1 vs. NCBI_GenBank
Match: gi|727152674|emb|CEG65172.1| (hypothetical protein RMATCC62417_02009 [Rhizopus microsporus])

HSP 1 Score: 184.111 bits (466), Expect = 1.493e-51
Identity = 90/173 (52.02%), Postives = 124/173 (71.68%), Query Frame = 0
Query:   78 DARPPVVILGSGWAGFQLARDLNKAKFDVTVISDRNHFLFTPLLPSTTVGTLEFRTIQEPVRTIP-GIKFYQARATRLNFEERQVACE---EYYLKERFEVNYEYLILAVGSTTNTFNVPGVCPDNHVYFLKQLSDARAIRSRIIECFERASYPDLPSAAQARLLSFLVVGGG 246
            + +  V+ILGSGWAGF+L RDL+K K+DV+V+S RN+F+FTPLL ST+VGTLEFR I EPVR+    IK++QA    ++ + R   C    +   ++RF ++Y+ LI+AVGS +NTF +PGV   +H +FLK ++DAR IR R+IECFE AS P +    +A LL F+VVGGG
Sbjct:   72 ETKEKVIILGSGWAGFKLMRDLDKEKYDVSVVSPRNYFVFTPLLASTSVGTLEFRCITEPVRSYSKNIKYHQAYCDEIDLDSRVAHCTYNVDDIQQKRFTLDYDKLIIAVGSYSNTFGIPGV--KDHAFFLKDVNDARKIRKRLIECFENASQPGVSDKDKADLLHFVVVGGG 242          
The following BLAST results are available for this feature:
BLAST of EWM30088.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112728|gb|EWM30088.1|0.000e+0100.00FAD-dependent pyridine nucleotide-disulfide oxidor... [more]
gi|553185261|ref|XP_005854223.1|6.408e-11583.01NADH dehydrogenase [Nannochloropsis gaditana CCMP5... [more]
gi|299116714|emb|CBN76274.1|2.036e-6559.15NADH dehydrogenase (ubiquinone) (Partial), partial... [more]
gi|224013718|ref|XP_002296523.1|1.138e-5858.48predicted protein, partial [Thalassiosira pseudona... [more]
gi|1072228116|gb|OEU12854.1|2.819e-5855.06FAD/NAD(P)-binding domain-containing protein [Frag... [more]
gi|1210518898|dbj|GAX22180.1|4.487e-5353.59hypothetical protein FisN_19Lh240 [Fistulifera sol... [more]
gi|1210521666|dbj|GAX19656.1|1.727e-5254.80hypothetical protein FisN_19Hh240 [Fistulifera sol... [more]
gi|727152675|emb|CEG65173.1|3.631e-5252.02hypothetical protein RMATCC62417_02009 [Rhizopus m... [more]
gi|727140788|emb|CEG76776.1|6.046e-5251.45hypothetical protein RMATCC62417_11628 [Rhizopus m... [more]
gi|727152674|emb|CEG65172.1|1.493e-5152.02hypothetical protein RMATCC62417_02009 [Rhizopus m... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna583rna583Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications