rna5826, rna5826 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5826
Unique Name	rna5826
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1911
Alignment location	CM002466.1:941998..945105 +

Link to JBrowse

Properties


Property Name	Value
Product	chromatin modifying protein 5
Orig transcript id	gnl\|cribi\|Naga_100381g2.8973.mrna
Orig protein id	gnl\|cribi\|Naga_100381g2.8973
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:941998..945105 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100381g2	gene5626	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5826	rna5826-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24858.1	cds5811	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:941998..945105+
coding sequence from alignment at CM002466.1:941998..945105+

mRNA sequence

>rna5826 ID=rna5826|Name=rna5826|organism=Nannochloropsis gaditana|type=mRNA|length=1911bp
GAGCAGGAAACTACCTTCGTGAGCGCCGTAGCGCACGTGGCGTACCCTAG
ATTATACGCAAATTAGGACATGTGTCAATTACCCTTGAGGAGCTGCTCGC
CTCATCGCTGCGCGCTTCATCAAGTCATTCGGGGATAATGTGCTACTTGA
ACGCTTTTTGTCATTATTTTGTCCAGGGCGTGCGGTTTGTCAAATAGGGA
CGGGAGCCTTCGTGTCTGATTGTCAAGCAACCGTTCTTTGTATTGCTCCA
TTCAAAGGGTGTCGTTTCCCCCCATAACTTTTATTTGTAGGAAAACGCCT
CCTTCGCGACACAGGAGAGAGGAGGTACGGGCAACACACCCGGCTGCGGG
TAGGAAAAAAGGCGCTTTTCCACTGTATCGTGAAGCGAATAAAAGACATT
TAAAAAGAAGAATATGGCTGCGCCCGGTTCGGAGGTCTCGTCGGATGGAG
GCTTCGAACAAAGGAGCGAGACAGAGGAAGAAGTCTTGGATGGGGGAGGT
ATTTTCACCTATAAACCCGTCGCATACGCCCTGGGAAGACGAGGAAAAGA
CGCCGTCGATGGAATGAGTGAAAGCAGTAGCAGCGACGACGAGGACGACG
ACGACGTCCGACCCGTTTCCCCCCGTAGACCTGGAAGAGACAAGGGGCCA
AAACGAGGGCGGGAGTGTCTATCGAGTACAGACTCCCTCTCTTCCCCTTC
CAAGAGACCCCCCCCGGTGGTCGAAATTGAGAGCGACGAAAGCGATGACG
ATGGCGTGGTCCTACTGGTGACGACGAATGGCAAACATAGAGAGAAAACA
GAAGCGTCGGGTCGCGGCGCATCGGACGAGGAGGAAGACGTCGACATTGG
CAGGTATCTGGATGGGGACATCCAAGAGGAGGAATTGACCACGCTACAGC
CGGCGGCCACGGGAGGGAAAAGGAGGGGCAAGGGGCCAAATGGGACAGGA
AACGGACGACCCATGCTCGCCACAGGCACTAGGGTAGGCTCATGCCCCAA
CGGCAGGACCTCAGTGCCCGGATTGGGCGCCCCACCCGCTGCCGTGGACG
TGACTGCGGAGGAGGAAATGACGGCACAACCACATGCCAAGGCTCGCCTC
GAAGCATTGAGGGCGGATACCTTGCGAATGGGGGCGGCCTTGCGGGCCAA
TGTGACGGTGGAGGTGGAGGACCTGGTGGACACGGCTAGTGTCGCCAGGG
AAACGGGACTCCAAAAAGCGACGACGACTGAGGATAAAGTGATGCTCAAG
GTAGGGATGCAGGGGCGTCAGCTACAACCCTTCCGAGTGTATACCTACAG
CATGCTTTCGGACGTGTTTGACGCCTACGCGCGCATCAAAGGTCTGCGTT
CGGAGGATCTGACCTTTAGCTATCAAGGGATGGAATTGGAAGGTTTCGAT
CAGCCGCGCTACGTAGGCATGGTGGCAGGAGACGATCCAAGCGCGGCTGG
AAACATCATTTATGTCCAAGACCGAGCGGCGTTGGCCGCCAAAACCGCGC
AAGCCCTTGCGGCGTCCAAGACGGTAAATTTAGTGCTGCAATGGCAAGGA
GGACAAGAGAATGTGTCGATGAAAATGCAAGGAAGCTTTGGCGAGCTCAA
GAAAACGATGGCGGCGAAGAAAGGTGTGGACGTGGCCACGGTGCGCTTTG
TGTTCGACGGGGTGACCTTGAGTGCGGAGACAACTCCTGAGCAACTCGAA
ATGGAAGACGAAGATACGGTGGACGTGTACGGATTGTCATGATGGGATAT
GGGGGGGGGGCGGAAAGGAAAGAAAGGAGGAAGCCTGGCTGGAGGGAAAA
AGCGTGTGTACGACGGGCGACGAGGTGCAAAGGACGACAGCTTGTAGATA
TGTAACACTTACAACGGGTTGATGTATTGATGGAGAGACAAATACGGCAA
CGATGCAGGAG

protein sequence of rna5826

>rna5826-protein ID=rna5826-protein|Name=rna5826|organism=Nannochloropsis gaditana|type=polypeptide|length=238bp
MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIK
RSSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKD
TITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGR
NYGVSDEIDEADLDAELAGLEDELEGLGETEGKGRGRGEREGREGEGASL
GRRGMVDGPGVWGTGNIAIRVADSAGGAPPAKAPVLSS

mRNA from alignment at CM002466.1:941998..945105+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5826 ID=rna5826|Name=rna5826|organism=Nannochloropsis gaditana|type=mRNA|length=3108bp|location=Sequence derived from alignment at CM002466.1:941998..945105+ (Nannochloropsis gaditana)
GTCATTGCTCGATCAACGATGTATGCAttgcctccagcacctcgcATTAC
TTCAAAACTTTCGTGCTACATGTCGCATCCGGAGTCCACTTTCACCTTAC
CCATCCTTAccctttttccatgtccACTGTCTATTTTCTCTCAACAAATT
CTCTCAGTCTGTGGGATCAATGGCAATAACTAATCCTTAccctttttcca
tgtccACTGTCTATTTTCTCTCAACAAATTCTCTCAGTCTGTGGGATCAA
TGGCAATAACTCTCCTTTCCATCAATAATTGATTAAATTATCTCCGTTTA
GTCCATCTTTAGGATCGACCAGATCCTTTTTAAAAGGTGCTGCTAGCTCA
ACGGctgaaggggagaggacacTTAGGTCAGTATTGCGCGGAAGCACATC
CCACTCTGCGCTTGCAGCCATTTCATTTAATATTTGACCAGTGTGTTGCA
TGTACAAAAGATTGGACGGGGATGGAAACATGGAAATTTCCTCTGATTTT
TGTTTCCCTTCCACAGAGCTTTTACGTCGAAGTGCGCTCTAACAGCTAGC
TTGCCGAGGGCACGTTAGACTCTAAGCCAAGCAGTCGGCTATTTTTACCT
CTGTCGTCCATTTCTGGTGGCACGATCCCGACACACACACGTCAAAGACG
GACATGAACCGCATTTTCGGACAAAAGAAAGTTcaggcccctgccccctc
cctgggTAAGGAGGACTgtggggaaggtggaagtggcaagggagggaggc
tagAAAAAGTGAGCGTATGCTGGTCTCATGCTACTGTTGCTGCAAGAAAG
TGAGTGCCTTGACACATGGCAGGGCACGCTAGGACTCCCCAGCACTCGCA
GCCAGTCGCACTATTACTTctaccgccctccccattGTGTACTGGCTCAT
AAAGCTGTCCACGTCTTCTGTAAAATTGCGACGACGAATGTACCTCCATT
TATTCTTCCGCTTCATTGTTTCTCATGCGTCACAGGCGACGCGTCTGGGA
AGATAGACGGGCGTTTGAAAGGCCTGGATGATAAGGTACGCAACAATGGG
TTGATGCGGGGGGGGATTGGCGTGTTTTTTCCTTTAGCTTATTCTTGTTT
CCCGAAATTTCACTTTTTGGTTTCTCTCCTCGTAGATCAAGGCCTTGGAC
GACGAATTGAGGAAATTTCAAGGCCTAATCAAGCGGTCTTCGGGCGCCAC
GCAGGCCAATCATAAGCGCCGAGCCATCGATGTGAGTGCCaaagggggac
gggaagggggctGTGGGTGAAGGCGAGAAAATCGCTCAAAGACCCTTCAG
AGCAGAATGTCCGACATTCGTAGACTGGGAACTGGAAACAAAGACCCTTG
AGCCTGCAACTATCACAGGGCTCCTCCGAGAAGATGGCTCCCAACTcaaa
cctctccttccctcccttcctccctccctccctccctccatcccttgctT
TTTCTCGCCAGGTAttgaagcggaagaagatgtACGAACAGCAGAGGGAC
CAGCTGGCAGCTCAATCTTTCAACGTCGACCAAACGAACTTTGCCTTAGA
GAGCGTCAAGGTGGGAGGCtgggggcgaagggagggaacgagggagggag
ggagggaggaagggagggaacgagggagggaacgagggagggagggagga
agggagggaaggagggagggaacgggggggTACGTCGGAGCCACCATCAT
TTCCTGTGGGACAGTGCGTGGCAGAAGGTAGGGCCCATCATGGGCCCACG
TGCAGATAAGAGAAGTATAGGCGATCACTTGCACATAAGAAAAGTGTAGG
CGATCACTTGCAAATTAGAAAAGTGTAGGCGATGGAAAGCGGCGAGGGGA
CTTTCGGGGTCTGGCATTGCCGGCAGCGATCTCTATCCTAGGCTTGCCAA
GCAACGTACTCGCCGTCTCACCACCCCaatctctttttttccttgtatCC
TTTCGATCTATAATCCGCATGTGCGTTTAGGACACCATCACGACTGTGGA
TGCCATGAAAGGAGCGCACAAAGCCCTGAAAgtggaggccaagaaagTCA
AGATAGATGACAttgaggtagggagggagggagggagggaagggggggga
ggagcgaggaagatgaaatTAAATGTTGGAGGGGATGCGCGACACCATAG
TCTCCGAGCACGTTGAAAGGCTCTGTGTGGCgcgagaccgaggagggaga
aggaccggGGTGGGGTTCAGATTGGCAGAAGAGATCAGGATCGTCAGGGG
GGAGTGAGTATGACGGAGAGAGCCTGGGTAGGAGACCTGGCGGTCCTTAC
CCACCATTAGGGGGGACTTCGGTGGGGAAGAGTATGTGCAGGCAGGCAAG
GGGTATTCTCTCATTGTTAGGGTGAACTTACGGGCAGCTTACCAGTCAGT
cggtggggagggcatggcTGCGATCGATCCGCATTTATTCTGTGtctctt
gccttccttctaCGTCGCCTAGGACTTGACGGACGACCTGGCGGACATGA
TGGAGGACATGAACGAGATCAACGATGCTTTAGGCCGCAACTACGGCGTT
TCCGACGAGATCGACGAGGCGGATTTGGACGCGGAGCTGGCCGGGTTGGA
GGATGAGCTGGAAGGACTGGGCGAGACGGAGGgtaagggaaggggaaggg
gggaaagggaggggcgggagggagaaggtgccAGCCTGGGTCGGCGCGGC
ATGGTGGATGGGCCGGGCGTTTGGGGGACAGGGAATATTGCCATAAGGGT
CGCCGACTCCGCAGGGGGGGCTCCCCCGGCGAAGGCccctgtcctttcct
cctgacACGTTGGTacccgccttttccctctttccccctttttccccgcc
aCCGTTGGGTGCGTCCCCCACAGCCGATGCGACCGCGTCCTCGGCCGAGG
CGACCCCTGCCTATCTCTTGCCCAGCGAACCTGTGAACGCACCTGAAGCC
AAAATTGGCGCGCAAACAACCACCGACGAATTTGGCTTGCCCGTGGCCCC
GGTCCACAACTAGGGAGCCCGCGgtatggggggggagggaggggttgggg
ggggccCTGACATGTGCACATGTTTTGTTCAAAGCAAAAAGAAGTAAAGC
GTTGGGTG

Coding sequence (CDS) from alignment at CM002466.1:941998..945105+

>rna5826 ID=rna5826|Name=rna5826|organism=Nannochloropsis gaditana|type=CDS|length=4302bp|location=Sequence derived from alignment at CM002466.1:941998..945105+ (Nannochloropsis gaditana)
ATGAACCGCATTTTCGGACAAAAGAAAGTTcaggcccctgccccctccct
ggGCGACGCGTCTGGGAAGATAGACGGGCGTTTGAAAGGCCTGGATGATA
AGATCAAGGCCTTGGACGACGAATTGAGGAAATTTCAAGGCCTAATCAAG
CGGTCTTCGGGCGCCACGCAGGCCAATCATAAGCGCCGAGCCATCGATGT
AttgaagcggaagaagatgtACGAACAGCAGAGGGACCAGCTGGCAGCTC
AATCTTTCAACGTCGACCAAACGAACTTTGCCTTAGAGAGCGTCAAGGAC
ACCATCACGACTGTGGATGCCATGAAAGGAGCGCACAAAGCCCTGAAAgt
ggaggccaagaaagTCAAGATAGATGACAttgagGACTTGACGGACGACC
TGGCGGACATGATGGAGGACATGAACGAGATCAACGATGCTTTAGGCCGC
AACTACGGCGTTTCCGACGAGATCGACGAGGCGGATTTGGACGCGGAGCT
GGCCGGGTTGGAGGATGAGCTGGAAGGACTGGGCGAGACGGAGGgtaagg
gaaggggaaggggggaaagggaggggcgggagggagaaggtgccAGCCTG
GGTCGGCGCGGCATGGTGGATGGGCCGGGCGTTTGGGGGACAGGGAATAT
TGCCATAAGGGTCGCCGACTCCGCAGGGGGGGCTCCCCCGGCGAAGGCcc
ctgtcctttcctcctgaATGAACCGCATTTTCGGACAAAAGAAAGTTcag
gcccctgccccctccctggGCGACGCGTCTGGGAAGATAGACGGGCGTTT
GAAAGGCCTGGATGATAAGATCAAGGCCTTGGACGACGAATTGAGGAAAT
TTCAAGGCCTAATCAAGCGGTCTTCGGGCGCCACGCAGGCCAATCATAAG
CGCCGAGCCATCGATGTAttgaagcggaagaagatgtACGAACAGCAGAG
GGACCAGCTGGCAGCTCAATCTTTCAACGTCGACCAAACGAACTTTGCCT
TAGAGAGCGTCAAGGACACCATCACGACTGTGGATGCCATGAAAGGAGCG
CACAAAGCCCTGAAAgtggaggccaagaaagTCAAGATAGATGACAttga
gGACTTGACGGACGACCTGGCGGACATGATGGAGGACATGAACGAGATCA
ACGATGCTTTAGGCCGCAACTACGGCGTTTCCGACGAGATCGACGAGGCG
GATTTGGACGCGGAGCTGGCCGGGTTGGAGGATGAGCTGGAAGGACTGGG
CGAGACGGAGGgtaagggaaggggaaggggggaaagggaggggcgggagg
gagaaggtgccAGCCTGGGTCGGCGCGGCATGGTGGATGGGCCGGGCGTT
TGGGGGACAGGGAATATTGCCATAAGGGTCGCCGACTCCGCAGGGGGGGC
TCCCCCGGCGAAGGCccctgtcctttcctcctgaATGAACCGCATTTTCG
GACAAAAGAAAGTTcaggcccctgccccctccctggGCGACGCGTCTGGG
AAGATAGACGGGCGTTTGAAAGGCCTGGATGATAAGATCAAGGCCTTGGA
CGACGAATTGAGGAAATTTCAAGGCCTAATCAAGCGGTCTTCGGGCGCCA
CGCAGGCCAATCATAAGCGCCGAGCCATCGATGTAttgaagcggaagaag
atgtACGAACAGCAGAGGGACCAGCTGGCAGCTCAATCTTTCAACGTCGA
CCAAACGAACTTTGCCTTAGAGAGCGTCAAGGACACCATCACGACTGTGG
ATGCCATGAAAGGAGCGCACAAAGCCCTGAAAgtggaggccaagaaagTC
AAGATAGATGACAttgagGACTTGACGGACGACCTGGCGGACATGATGGA
GGACATGAACGAGATCAACGATGCTTTAGGCCGCAACTACGGCGTTTCCG
ACGAGATCGACGAGGCGGATTTGGACGCGGAGCTGGCCGGGTTGGAGGAT
GAGCTGGAAGGACTGGGCGAGACGGAGGgtaagggaaggggaagggggga
aagggaggggcgggagggagaaggtgccAGCCTGGGTCGGCGCGGCATGG
TGGATGGGCCGGGCGTTTGGGGGACAGGGAATATTGCCATAAGGGTCGCC
GACTCCGCAGGGGGGGCTCCCCCGGCGAAGGCccctgtcctttcctcctg
aATGAACCGCATTTTCGGACAAAAGAAAGTTcaggcccctgccccctccc
tggGCGACGCGTCTGGGAAGATAGACGGGCGTTTGAAAGGCCTGGATGAT
AAGATCAAGGCCTTGGACGACGAATTGAGGAAATTTCAAGGCCTAATCAA
GCGGTCTTCGGGCGCCACGCAGGCCAATCATAAGCGCCGAGCCATCGATG
TAttgaagcggaagaagatgtACGAACAGCAGAGGGACCAGCTGGCAGCT
CAATCTTTCAACGTCGACCAAACGAACTTTGCCTTAGAGAGCGTCAAGGA
CACCATCACGACTGTGGATGCCATGAAAGGAGCGCACAAAGCCCTGAAAg
tggaggccaagaaagTCAAGATAGATGACAttgagGACTTGACGGACGAC
CTGGCGGACATGATGGAGGACATGAACGAGATCAACGATGCTTTAGGCCG
CAACTACGGCGTTTCCGACGAGATCGACGAGGCGGATTTGGACGCGGAGC
TGGCCGGGTTGGAGGATGAGCTGGAAGGACTGGGCGAGACGGAGGgtaag
ggaaggggaaggggggaaagggaggggcgggagggagaaggtgccAGCCT
GGGTCGGCGCGGCATGGTGGATGGGCCGGGCGTTTGGGGGACAGGGAATA
TTGCCATAAGGGTCGCCGACTCCGCAGGGGGGGCTCCCCCGGCGAAGGCc
cctgtcctttcctcctgaATGAACCGCATTTTCGGACAAAAGAAAGTTca
ggcccctgccccctccctggGCGACGCGTCTGGGAAGATAGACGGGCGTT
TGAAAGGCCTGGATGATAAGATCAAGGCCTTGGACGACGAATTGAGGAAA
TTTCAAGGCCTAATCAAGCGGTCTTCGGGCGCCACGCAGGCCAATCATAA
GCGCCGAGCCATCGATGTAttgaagcggaagaagatgtACGAACAGCAGA
GGGACCAGCTGGCAGCTCAATCTTTCAACGTCGACCAAACGAACTTTGCC
TTAGAGAGCGTCAAGGACACCATCACGACTGTGGATGCCATGAAAGGAGC
GCACAAAGCCCTGAAAgtggaggccaagaaagTCAAGATAGATGACAttg
agGACTTGACGGACGACCTGGCGGACATGATGGAGGACATGAACGAGATC
AACGATGCTTTAGGCCGCAACTACGGCGTTTCCGACGAGATCGACGAGGC
GGATTTGGACGCGGAGCTGGCCGGGTTGGAGGATGAGCTGGAAGGACTGG
GCGAGACGGAGGgtaagggaaggggaaggggggaaagggaggggcgggag
ggagaaggtgccAGCCTGGGTCGGCGCGGCATGGTGGATGGGCCGGGCGT
TTGGGGGACAGGGAATATTGCCATAAGGGTCGCCGACTCCGCAGGGGGGG
CTCCCCCGGCGAAGGCccctgtcctttcctcctgaATGAACCGCATTTTC
GGACAAAAGAAAGTTcaggcccctgccccctccctggGCGACGCGTCTGG
GAAGATAGACGGGCGTTTGAAAGGCCTGGATGATAAGATCAAGGCCTTGG
ACGACGAATTGAGGAAATTTCAAGGCCTAATCAAGCGGTCTTCGGGCGCC
ACGCAGGCCAATCATAAGCGCCGAGCCATCGATGTAttgaagcggaagaa
gatgtACGAACAGCAGAGGGACCAGCTGGCAGCTCAATCTTTCAACGTCG
ACCAAACGAACTTTGCCTTAGAGAGCGTCAAGGACACCATCACGACTGTG
GATGCCATGAAAGGAGCGCACAAAGCCCTGAAAgtggaggccaagaaagT
CAAGATAGATGACAttgagGACTTGACGGACGACCTGGCGGACATGATGG
AGGACATGAACGAGATCAACGATGCTTTAGGCCGCAACTACGGCGTTTCC
GACGAGATCGACGAGGCGGATTTGGACGCGGAGCTGGCCGGGTTGGAGGA
TGAGCTGGAAGGACTGGGCGAGACGGAGGgtaagggaaggggaagggggg
aaagggaggggcgggagggagaaggtgccAGCCTGGGTCGGCGCGGCATG
GTGGATGGGCCGGGCGTTTGGGGGACAGGGAATATTGCCATAAGGGTCGC
CGACTCCGCAGGGGGGGCTCCCCCGGCGAAGGCccctgtcctttcctcct
ga

Synonyms

Publications