EWM24858.1, cds5811 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|585106468|gb|EWM24858.1| (chromatin modifying protein 5 [Nannochloropsis gaditana]) HSP 1 Score: 473.011 bits (1216), Expect = 1.353e-168 Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0
Query: 1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKRSSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDELEGLGETEGKGRGRGEREGREGEGASLGRRGMVDGPGVWGTGNIAIRVADSAGGAPPAKAPVLSS 238
MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKRSSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDELEGLGETEGKGRGRGEREGREGEGASLGRRGMVDGPGVWGTGNIAIRVADSAGGAPPAKAPVLSS
Sbjct: 1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKRSSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDELEGLGETEGKGRGRGEREGREGEGASLGRRGMVDGPGVWGTGNIAIRVADSAGGAPPAKAPVLSS 238
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|676384207|ref|XP_009035382.1| (hypothetical protein AURANDRAFT_6377, partial [Aureococcus anophagefferens] >gi|323453740|gb|EGB09611.1| hypothetical protein AURANDRAFT_6377, partial [Aureococcus anophagefferens]) HSP 1 Score: 224.172 bits (570), Expect = 1.036e-70 Identity = 112/174 (64.37%), Postives = 137/174 (78.74%), Query Frame = 0
Query: 1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKRSSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDEL 174
M RIFG KK P P+LGDAS K++ R GLD+KIK L+ EL ++ +K++ G K+RA+ VLKRKKMYE QRDQLA Q+FNV+QT+FA++SVKDT+TTVDAMK A K LK E KKV ID IED+ DDLADMMEDMNE+ DALGR+YG+ D++DEADLDAELA L+DEL
Sbjct: 1 MKRIFGAKKSLPPPPTLGDASAKLETRTAGLDEKIKKLEVELAGYKEKLKKAKGPAAKTLKQRAMAVLKRKKMYEAQRDQLAGQAFNVEQTSFAIDSVKDTLTTVDAMKAASKTLKTEFKKVDIDQIEDVQDDLADMMEDMNEVQDALGRSYGIGDDVDEADLDAELACLDDEL 174
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|1195533228|ref|XP_021077967.1| (charged multivesicular body protein 5 [Mus pahari]) HSP 1 Score: 178.718 bits (452), Expect = 9.665e-53 Identity = 97/175 (55.43%), Postives = 123/175 (70.29%), Query Frame = 0
Query: 1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKR-SSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDEL 174
MNR FG+ K +AP PSL D G +D R + +D KI LD EL K++ IK+ G + K++A+ VLK+K+MYEQQRD LA QSFN++Q N+ ++S+KDT TTVDAMK K +K K+VKID IEDL D L DMMED NEI +ALGR+YG E+DE DL+AEL L DEL
Sbjct: 1 MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTP-ELDEDDLEAELDALGDEL 174
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|354499837|ref|XP_003512011.1| (PREDICTED: charged multivesicular body protein 5 [Cricetulus griseus]) HSP 1 Score: 178.718 bits (452), Expect = 1.101e-52 Identity = 96/175 (54.86%), Postives = 124/175 (70.86%), Query Frame = 0
Query: 1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKR-SSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDEL 174
MNR FG+ K +AP+PSL D G +D R + +D KI LD EL K++ IK+ G + K++A+ VLK+K+MYEQQRD LA QSFN++Q N+ ++S+KDT TTVDAMK K +K K+VK+D IEDL D L DMMED NEI +ALGR+YG E+DE DL+AEL L DEL
Sbjct: 1 MNRFFGKAKPKAPSPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKQVKVDQIEDLQDQLEDMMEDANEIQEALGRSYGTP-ELDEDDLEAELDALGDEL 174
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|13386442|ref|NP_084090.1| (charged multivesicular body protein 5 [Mus musculus] >gi|70912368|ref|NP_001020581.1| charged multivesicular body protein 5 [Rattus norvegicus] >gi|1195715350|ref|XP_021015820.1| charged multivesicular body protein 5 [Mus caroli] >gi|51702143|sp|Q9D7S9.1|CHMP5_MOUSE RecName: Full=Charged multivesicular body protein 5; AltName: Full=Chromatin-modifying protein 5; AltName: Full=SNF7 domain-containing protein 2 >gi|73917772|sp|Q4QQV8.1|CHMP5_RAT RecName: Full=Charged multivesicular body protein 5; AltName: Full=Chromatin-modifying protein 5 >gi|12843385|dbj|BAB25962.1| unnamed protein product [Mus musculus] >gi|13905298|gb|AAH06947.1| Chromatin modifying protein 5 [Mus musculus] >gi|67678283|gb|AAH97963.1| Chromatin modifying protein 5 [Rattus norvegicus] >gi|74151025|dbj|BAE27642.1| unnamed protein product [Mus musculus] >gi|148673474|gb|EDL05421.1| chromatin modifying protein 5, isoform CRA_b [Mus musculus] >gi|149045651|gb|EDL98651.1| chromatin modifying protein 5 [Rattus norvegicus]) HSP 1 Score: 178.718 bits (452), Expect = 1.227e-52 Identity = 97/175 (55.43%), Postives = 123/175 (70.29%), Query Frame = 0
Query: 1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKR-SSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDEL 174
MNR FG+ K +AP PSL D G +D R + +D KI LD EL K++ IK+ G + K++A+ VLK+K+MYEQQRD LA QSFN++Q N+ ++S+KDT TTVDAMK K +K K+VKID IEDL D L DMMED NEI +ALGR+YG E+DE DL+AEL L DEL
Sbjct: 1 MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTP-ELDEDDLEAELDALGDEL 174
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|1121920241|ref|XP_019480035.1| (PREDICTED: charged multivesicular body protein 5 [Hipposideros armiger]) HSP 1 Score: 178.718 bits (452), Expect = 1.339e-52 Identity = 97/175 (55.43%), Postives = 123/175 (70.29%), Query Frame = 0
Query: 1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKR-SSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDEL 174
MNRIFG+ K +AP PSL D G +D R + +D KI LD EL K++ IK+ G + K++A+ VLK+K+MYEQQRD L+ QSFN++Q N+ ++S+KDT TTVDAMK K +K K+VKID IEDL D L DMMED NEI +AL R+YG EIDE DL+AEL L DEL
Sbjct: 1 MNRIFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLSQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTP-EIDEDDLEAELDALGDEL 174
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|625268115|ref|XP_007625568.1| (PREDICTED: charged multivesicular body protein 5 [Cricetulus griseus] >gi|537226291|gb|ERE83284.1| charged multivesicular body protein 5 [Cricetulus griseus]) HSP 1 Score: 178.333 bits (451), Expect = 1.794e-52 Identity = 96/175 (54.86%), Postives = 123/175 (70.29%), Query Frame = 0
Query: 1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKR-SSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDEL 174
MNR FG+ K +AP PSL D G +D R + +D KI LD EL K++ IK+ G + K++A+ VLK+K+MYEQQRD LA QSFN++Q N+ ++S+KDT TTVDAMK K +K K+VK+D IEDL D L DMMED NEI +ALGR+YG E+DE DL+AEL L DEL
Sbjct: 1 MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKQVKVDQIEDLQDQLEDMMEDANEIQEALGRSYGTP-ELDEDDLEAELDALGDEL 174
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|795135897|ref|XP_011835405.1| (PREDICTED: charged multivesicular body protein 5 isoform X3 [Mandrillus leucophaeus] >gi|795337662|ref|XP_011781931.1| PREDICTED: charged multivesicular body protein 5 isoform X3 [Colobus angolensis palliatus]) HSP 1 Score: 177.563 bits (449), Expect = 2.207e-52 Identity = 96/175 (54.86%), Postives = 123/175 (70.29%), Query Frame = 0
Query: 1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKR-SSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDEL 174
MNR+FG+ K +AP PSL D G +D R + +D KI LD EL K++ IK+ G + K++A+ VLK+K+MYEQQRD LA QSFN++Q N+ ++S+KDT TTVDAMK K +K K+VKID IEDL D L DMMED NEI +AL R+YG E+DE DL+AEL L DEL
Sbjct: 1 MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTP-ELDEDDLEAELDALGDEL 174
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|524957907|ref|XP_005078913.1| (charged multivesicular body protein 5 [Mesocricetus auratus]) HSP 1 Score: 177.948 bits (450), Expect = 2.405e-52 Identity = 97/175 (55.43%), Postives = 122/175 (69.71%), Query Frame = 0
Query: 1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKR-SSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDEL 174
MNR FG+ K +AP PSL D G +D R + +D KI LD EL K++ IK+ G + K++A+ VLK+K+MYEQQRD LA QSFN++Q N+ ++S+KDT TTVDAMK K +K K VKID IEDL D L DMMED NEI +ALGR+YG E+DE DL+AEL L DEL
Sbjct: 1 MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKHVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTP-ELDEDDLEAELDALGDEL 174
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|820997317|ref|XP_012364469.1| (PREDICTED: charged multivesicular body protein 5 isoform X2 [Nomascus leucogenys]) HSP 1 Score: 177.563 bits (449), Expect = 2.837e-52 Identity = 96/175 (54.86%), Postives = 123/175 (70.29%), Query Frame = 0
Query: 1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKR-SSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDEL 174
MNR+FG+ K +AP PSL D G +D R + +D KI LD EL K++ IK+ G + K++A+ VLK+K+MYEQQRD LA QSFN++Q N+ ++S+KDT TTVDAMK K +K K+VKID IEDL D L DMMED NEI +AL R+YG E+DE DL+AEL L DEL
Sbjct: 1 MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTP-ELDEDDLEAELDALGDEL 174 The following BLAST results are available for this feature:
BLAST of EWM24858.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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