EWM24858.1, cds5811 (CDS) Nannochloropsis gaditana

Overview
NameEWM24858.1
Unique Namecds5811
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:942651..942702 +
Alignment locationCM002466.1:942983..943032 +
Alignment locationCM002466.1:943133..943228 +
Alignment locationCM002466.1:943459..943557 +
Alignment locationCM002466.1:943978..944064 +
Alignment locationCM002466.1:944470..944802 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24858.1
Productchromatin modifying protein 5
Orig transcript idgnl|cribi|Naga_100381g2.8973.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:942651..942702 +
CM002466.1supercontigCM002466.1:942983..943032 +
CM002466.1supercontigCM002466.1:943133..943228 +
CM002466.1supercontigCM002466.1:943459..943557 +
CM002466.1supercontigCM002466.1:943978..944064 +
CM002466.1supercontigCM002466.1:944470..944802 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0006810transport
GO:0042221response to chemical
GO:0016043cellular component organization
GO:0008152metabolic process
GO:0009719response to endogenous stimulus
GO:0009605response to external stimulus
GO:0009607response to biotic stimulus
GO:0007034vacuolar transport
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Homology
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|585106468|gb|EWM24858.1| (chromatin modifying protein 5 [Nannochloropsis gaditana])

HSP 1 Score: 473.011 bits (1216), Expect = 1.353e-168
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0
Query:    1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKRSSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDELEGLGETEGKGRGRGEREGREGEGASLGRRGMVDGPGVWGTGNIAIRVADSAGGAPPAKAPVLSS 238
            MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKRSSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDELEGLGETEGKGRGRGEREGREGEGASLGRRGMVDGPGVWGTGNIAIRVADSAGGAPPAKAPVLSS
Sbjct:    1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKRSSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDELEGLGETEGKGRGRGEREGREGEGASLGRRGMVDGPGVWGTGNIAIRVADSAGGAPPAKAPVLSS 238          
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|676384207|ref|XP_009035382.1| (hypothetical protein AURANDRAFT_6377, partial [Aureococcus anophagefferens] >gi|323453740|gb|EGB09611.1| hypothetical protein AURANDRAFT_6377, partial [Aureococcus anophagefferens])

HSP 1 Score: 224.172 bits (570), Expect = 1.036e-70
Identity = 112/174 (64.37%), Postives = 137/174 (78.74%), Query Frame = 0
Query:    1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKRSSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDEL 174
            M RIFG KK   P P+LGDAS K++ R  GLD+KIK L+ EL  ++  +K++ G      K+RA+ VLKRKKMYE QRDQLA Q+FNV+QT+FA++SVKDT+TTVDAMK A K LK E KKV ID IED+ DDLADMMEDMNE+ DALGR+YG+ D++DEADLDAELA L+DEL
Sbjct:    1 MKRIFGAKKSLPPPPTLGDASAKLETRTAGLDEKIKKLEVELAGYKEKLKKAKGPAAKTLKQRAMAVLKRKKMYEAQRDQLAGQAFNVEQTSFAIDSVKDTLTTVDAMKAASKTLKTEFKKVDIDQIEDVQDDLADMMEDMNEVQDALGRSYGIGDDVDEADLDAELACLDDEL 174          
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|1195533228|ref|XP_021077967.1| (charged multivesicular body protein 5 [Mus pahari])

HSP 1 Score: 178.718 bits (452), Expect = 9.665e-53
Identity = 97/175 (55.43%), Postives = 123/175 (70.29%), Query Frame = 0
Query:    1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKR-SSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDEL 174
            MNR FG+ K +AP PSL D  G +D R + +D KI  LD EL K++  IK+   G  +   K++A+ VLK+K+MYEQQRD LA QSFN++Q N+ ++S+KDT TTVDAMK   K +K   K+VKID IEDL D L DMMED NEI +ALGR+YG   E+DE DL+AEL  L DEL
Sbjct:    1 MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTP-ELDEDDLEAELDALGDEL 174          
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|354499837|ref|XP_003512011.1| (PREDICTED: charged multivesicular body protein 5 [Cricetulus griseus])

HSP 1 Score: 178.718 bits (452), Expect = 1.101e-52
Identity = 96/175 (54.86%), Postives = 124/175 (70.86%), Query Frame = 0
Query:    1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKR-SSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDEL 174
            MNR FG+ K +AP+PSL D  G +D R + +D KI  LD EL K++  IK+   G  +   K++A+ VLK+K+MYEQQRD LA QSFN++Q N+ ++S+KDT TTVDAMK   K +K   K+VK+D IEDL D L DMMED NEI +ALGR+YG   E+DE DL+AEL  L DEL
Sbjct:    1 MNRFFGKAKPKAPSPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKQVKVDQIEDLQDQLEDMMEDANEIQEALGRSYGTP-ELDEDDLEAELDALGDEL 174          
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|13386442|ref|NP_084090.1| (charged multivesicular body protein 5 [Mus musculus] >gi|70912368|ref|NP_001020581.1| charged multivesicular body protein 5 [Rattus norvegicus] >gi|1195715350|ref|XP_021015820.1| charged multivesicular body protein 5 [Mus caroli] >gi|51702143|sp|Q9D7S9.1|CHMP5_MOUSE RecName: Full=Charged multivesicular body protein 5; AltName: Full=Chromatin-modifying protein 5; AltName: Full=SNF7 domain-containing protein 2 >gi|73917772|sp|Q4QQV8.1|CHMP5_RAT RecName: Full=Charged multivesicular body protein 5; AltName: Full=Chromatin-modifying protein 5 >gi|12843385|dbj|BAB25962.1| unnamed protein product [Mus musculus] >gi|13905298|gb|AAH06947.1| Chromatin modifying protein 5 [Mus musculus] >gi|67678283|gb|AAH97963.1| Chromatin modifying protein 5 [Rattus norvegicus] >gi|74151025|dbj|BAE27642.1| unnamed protein product [Mus musculus] >gi|148673474|gb|EDL05421.1| chromatin modifying protein 5, isoform CRA_b [Mus musculus] >gi|149045651|gb|EDL98651.1| chromatin modifying protein 5 [Rattus norvegicus])

HSP 1 Score: 178.718 bits (452), Expect = 1.227e-52
Identity = 97/175 (55.43%), Postives = 123/175 (70.29%), Query Frame = 0
Query:    1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKR-SSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDEL 174
            MNR FG+ K +AP PSL D  G +D R + +D KI  LD EL K++  IK+   G  +   K++A+ VLK+K+MYEQQRD LA QSFN++Q N+ ++S+KDT TTVDAMK   K +K   K+VKID IEDL D L DMMED NEI +ALGR+YG   E+DE DL+AEL  L DEL
Sbjct:    1 MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTP-ELDEDDLEAELDALGDEL 174          
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|1121920241|ref|XP_019480035.1| (PREDICTED: charged multivesicular body protein 5 [Hipposideros armiger])

HSP 1 Score: 178.718 bits (452), Expect = 1.339e-52
Identity = 97/175 (55.43%), Postives = 123/175 (70.29%), Query Frame = 0
Query:    1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKR-SSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDEL 174
            MNRIFG+ K +AP PSL D  G +D R + +D KI  LD EL K++  IK+   G  +   K++A+ VLK+K+MYEQQRD L+ QSFN++Q N+ ++S+KDT TTVDAMK   K +K   K+VKID IEDL D L DMMED NEI +AL R+YG   EIDE DL+AEL  L DEL
Sbjct:    1 MNRIFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLSQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTP-EIDEDDLEAELDALGDEL 174          
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|625268115|ref|XP_007625568.1| (PREDICTED: charged multivesicular body protein 5 [Cricetulus griseus] >gi|537226291|gb|ERE83284.1| charged multivesicular body protein 5 [Cricetulus griseus])

HSP 1 Score: 178.333 bits (451), Expect = 1.794e-52
Identity = 96/175 (54.86%), Postives = 123/175 (70.29%), Query Frame = 0
Query:    1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKR-SSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDEL 174
            MNR FG+ K +AP PSL D  G +D R + +D KI  LD EL K++  IK+   G  +   K++A+ VLK+K+MYEQQRD LA QSFN++Q N+ ++S+KDT TTVDAMK   K +K   K+VK+D IEDL D L DMMED NEI +ALGR+YG   E+DE DL+AEL  L DEL
Sbjct:    1 MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKQVKVDQIEDLQDQLEDMMEDANEIQEALGRSYGTP-ELDEDDLEAELDALGDEL 174          
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|795135897|ref|XP_011835405.1| (PREDICTED: charged multivesicular body protein 5 isoform X3 [Mandrillus leucophaeus] >gi|795337662|ref|XP_011781931.1| PREDICTED: charged multivesicular body protein 5 isoform X3 [Colobus angolensis palliatus])

HSP 1 Score: 177.563 bits (449), Expect = 2.207e-52
Identity = 96/175 (54.86%), Postives = 123/175 (70.29%), Query Frame = 0
Query:    1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKR-SSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDEL 174
            MNR+FG+ K +AP PSL D  G +D R + +D KI  LD EL K++  IK+   G  +   K++A+ VLK+K+MYEQQRD LA QSFN++Q N+ ++S+KDT TTVDAMK   K +K   K+VKID IEDL D L DMMED NEI +AL R+YG   E+DE DL+AEL  L DEL
Sbjct:    1 MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTP-ELDEDDLEAELDALGDEL 174          
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|524957907|ref|XP_005078913.1| (charged multivesicular body protein 5 [Mesocricetus auratus])

HSP 1 Score: 177.948 bits (450), Expect = 2.405e-52
Identity = 97/175 (55.43%), Postives = 122/175 (69.71%), Query Frame = 0
Query:    1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKR-SSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDEL 174
            MNR FG+ K +AP PSL D  G +D R + +D KI  LD EL K++  IK+   G  +   K++A+ VLK+K+MYEQQRD LA QSFN++Q N+ ++S+KDT TTVDAMK   K +K   K VKID IEDL D L DMMED NEI +ALGR+YG   E+DE DL+AEL  L DEL
Sbjct:    1 MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKHVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTP-ELDEDDLEAELDALGDEL 174          
BLAST of EWM24858.1 vs. NCBI_GenBank
Match: gi|820997317|ref|XP_012364469.1| (PREDICTED: charged multivesicular body protein 5 isoform X2 [Nomascus leucogenys])

HSP 1 Score: 177.563 bits (449), Expect = 2.837e-52
Identity = 96/175 (54.86%), Postives = 123/175 (70.29%), Query Frame = 0
Query:    1 MNRIFGQKKVQAPAPSLGDASGKIDGRLKGLDDKIKALDDELRKFQGLIKR-SSGATQANHKRRAIDVLKRKKMYEQQRDQLAAQSFNVDQTNFALESVKDTITTVDAMKGAHKALKVEAKKVKIDDIEDLTDDLADMMEDMNEINDALGRNYGVSDEIDEADLDAELAGLEDEL 174
            MNR+FG+ K +AP PSL D  G +D R + +D KI  LD EL K++  IK+   G  +   K++A+ VLK+K+MYEQQRD LA QSFN++Q N+ ++S+KDT TTVDAMK   K +K   K+VKID IEDL D L DMMED NEI +AL R+YG   E+DE DL+AEL  L DEL
Sbjct:    1 MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTP-ELDEDDLEAELDALGDEL 174          
The following BLAST results are available for this feature:
BLAST of EWM24858.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106468|gb|EWM24858.1|1.353e-168100.00chromatin modifying protein 5 [Nannochloropsis gad... [more]
gi|676384207|ref|XP_009035382.1|1.036e-7064.37hypothetical protein AURANDRAFT_6377, partial [Aur... [more]
gi|1195533228|ref|XP_021077967.1|9.665e-5355.43charged multivesicular body protein 5 [Mus pahari][more]
gi|354499837|ref|XP_003512011.1|1.101e-5254.86PREDICTED: charged multivesicular body protein 5 [... [more]
gi|13386442|ref|NP_084090.1|1.227e-5255.43charged multivesicular body protein 5 [Mus musculu... [more]
gi|1121920241|ref|XP_019480035.1|1.339e-5255.43PREDICTED: charged multivesicular body protein 5 [... [more]
gi|625268115|ref|XP_007625568.1|1.794e-5254.86PREDICTED: charged multivesicular body protein 5 [... [more]
gi|795135897|ref|XP_011835405.1|2.207e-5254.86PREDICTED: charged multivesicular body protein 5 i... [more]
gi|524957907|ref|XP_005078913.1|2.405e-5255.43charged multivesicular body protein 5 [Mesocricetu... [more]
gi|820997317|ref|XP_012364469.1|2.837e-5254.86PREDICTED: charged multivesicular body protein 5 i... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5826rna5826Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications