rna5821, rna5821 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5821
Unique Name	rna5821
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1278
Alignment location	CM002466.1:926343..927265 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101105g1.1373.mrna
Orig protein id	gnl\|cribi\|Naga_101105g1.1373
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:926343..927265 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101105g1	gene5621	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5821	rna5821-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24867.1	cds5806	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:926343..927265-
coding sequence from alignment at CM002466.1:926343..927265-

mRNA sequence

>rna5821 ID=rna5821|Name=rna5821|organism=Nannochloropsis gaditana|type=mRNA|length=1278bp
CCTCCAGCTACCTGATCCAGGACAAGGTGGCTTCTCTTCCCGCCGGGTGC
ACCCCCGGAGTCCAATTGCTGGGCCTTCGGCCCGAAATCAAGGACGGCTT
TGTCGTCCTCCTCCTACCCATGCTCCGCCACGCGCGGCCGGAGCTAGACG
TTTTGGCGCACAGTCGCGGCAGTCCTTCCCATCCTGGAGGCTACGACCTC
CGCATCAAAATTCTAAATTTGGAAAAAAACCCGAGTATGCCTCCGACTCC
ACCGGGTCCTGCGTCCAGGCCGTCGGAGCCTGTGGAGAAAATGGAAGAGG
CGGGGGCGGAGGGCGGGAAGGAGGGCGGGGGCATCGGAGGAAGCGGAGAC
AGCCAAGCCGGGGAGCGCCCGGATAGAACGGGCAAGGAGGCTGGGTCTTC
GCCATCGTCCCAATCCTCCATGACAAAGCAAGCCCCCTCCGCCCTTGCCT
CGTTCTCCTCCCGGTTCCGCCTCCCCTCCGGCAACCGCCCGGCTCGGCCT
TTCCCTTCTTCGCCTCTGGACAAGCCTGGGGACCCTCCCTCCCTCCCTCC
CTCCCTCGGCACCACCACCCTGACCTCCTCCCTCTTCGAGGGCAAAGGCT
TCGTCGATGTCATGCGCAGCCTGAGCGGGCTCCCGAGGCTTTCCATGGCC
GCCTCCGGCACGGCAACGTCCTCCCCGCCCGCCTCTTCACACGTCCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCACCGCCCACGCCTACCAGCCCGGTAG
GGCCTCGTACACCCTCCCTCCCTCCACCTCTTGCGGCGACCGTCTCCTCC
ACCGGGAGCAGTTACCTTAAGGGGGAGGATCGGGACAAGGAAGTCGAGTG
GGGGGAATGGGGGGGGCCTGGGCCCTTCCAAAGCCCTGGCTTTCTCCTTC
CACCGTCCTTCCTCCCCCTCATCAATGCATTCGAGCCCGGCGTCGGTGCG
AGAAGAAGCACAAAATCAGGTGCCTCGACCGTGGGGGACAGCTACTTCTG
CTCTCCCTTTGGCACCCCCTACTTCGTCCCCCCCCCGTCCTCCCCCTCCT
CCTCTCCCGGGTCTTGTCCGGCACACCGGGCTCCTGCCTCGAGTGTTCTA
GCCTCCCCACCCATCTCGATTGGAAGGAGTGGCAGTCTAAGCAGCAGTAA
GGGTCGAAGGCTGTTGGCCCATTCGATAGAAGAGCGTTTGGTGGCCTTGC
AGCAAAAAGAGAGAAAATTGGAAAAGGCAGACAAATAGTAGCCATTGCGT
GCAAAAGAACAAATCAACCGCTGTAACA

protein sequence of rna5821

>rna5821-protein ID=rna5821-protein|Name=rna5821|organism=Nannochloropsis gaditana|type=polypeptide|length=101bp
MSLLQEEALKALKLVKADLDATKRVKQQLVAAVENKDAELATLQGQVDAL
KLEVQFLSSMGKEGGAALGAPSEEENALHQRLEALEKEKSEWILDRGSLH
A

mRNA from alignment at CM002466.1:926343..927265-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5821 ID=rna5821|Name=rna5821|organism=Nannochloropsis gaditana|type=mRNA|length=923bp|location=Sequence derived from alignment at CM002466.1:926343..927265- (Nannochloropsis gaditana)
CCCAGTAACCACAGGAGGAAGGTCATTCGCAGTACTTATGCCTTCTTTCC
AACCAGCAAGTTCAGCGCATTACCGCTAGAAAGCTGATACTTCACGCTTC
GCACGAGCCCGGGCTGCATGCTTCTCTGTCACCATTTTTATTGAAAGCCA
TGTCATTGTTGCAAGAAGAAGCCTTGAAGGCCCTTAAGCTTGTGAAGGCT
GACTTGGATGCCACCAAACGTGTAAAGCAACAGGTAAAGGTCTATGCTTT
TCGACTTGGAAGACCACGGGCGCTCTGTCTCTTCCTTTGCAAACCTTGAT
GTCACGACTGTGCTCGGCGATACACCCCGCTTTGGAAGTCAGGGACACGT
TCTGGGCCCCTCCATACCGCCAGTCCAACGTACCCGCTTACTGCCGGTTT
TCCCCTCCCTTCCCTTCATGCCTCCTCTCTCCTCAGCTGGTAGCGGCCGT
GGAAAACAAGGACGCAGAACTCGCCACGTTACAAGGCCAGGTCGATGCAC
TGAAACTGGAGGTGCAATTCCTTTCCTCCATGGGGAAGGAGGGAGGGGCT
GCCCTGGGTGCGCCCTCGGAGGAGGAGAACGGTGAGTAGGACGAGGAAGA
GAGGAAGGGAGGTTCAAGGCGGGGAGAGCGGCGCCCGGCCCCGAATAAGA
CACGAATATGCCCCAACTTTCTTTCGGAGGCGCAATGATTGGAGTTTGGA
TGGGGTGGAAGGTGTGATGGGCCTCGTCTCTCGTACCCATGCGCCAGTCT
CCCGCCCTCACCTTCCCCTCCCTCCCTCCCTCCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTTCAAACTCTCCCTCTTTCTTCCCGCTTTCAGC
TCTCCACCAACGCCTGGAAGCCTTGGAGAAGGAAAAGAGCGAGTGGATTC
TCGACCGCGGGTCTCTTCACGCC

Coding sequence (CDS) from alignment at CM002466.1:926343..927265-

>rna5821 ID=rna5821|Name=rna5821|organism=Nannochloropsis gaditana|type=CDS|length=909bp|location=Sequence derived from alignment at CM002466.1:926343..927265- (Nannochloropsis gaditana)
CTCTCCACCAACGCCTGGAAGCCTTGGAGAAGGAAAAGAGCGAGTGGATT
CTCGACCGCGGGTCTCTTCACGCCCTGGTAGCGGCCGTGGAAAACAAGGA
CGCAGAACTCGCCACGTTACAAGGCCAGGTCGATGCACTGAAACTGGAGG
TGCAATTCCTTTCCTCCATGGGGAAGGAGGGAGGGGCTGCCCTGGGTGCG
CCCTCGGAGGAGGAGAACGATGTCATTGTTGCAAGAAGAAGCCTTGAAGG
CCCTTAAGCTTGTGAAGGCTGACTTGGATGCCACCAAACGTGTAAAGCAA
CAGCTCTCCACCAACGCCTGGAAGCCTTGGAGAAGGAAAAGAGCGAGTGG
ATTCTCGACCGCGGGTCTCTTCACGCCCTGGTAGCGGCCGTGGAAAACAA
GGACGCAGAACTCGCCACGTTACAAGGCCAGGTCGATGCACTGAAACTGG
AGGTGCAATTCCTTTCCTCCATGGGGAAGGAGGGAGGGGCTGCCCTGGGT
GCGCCCTCGGAGGAGGAGAACGATGTCATTGTTGCAAGAAGAAGCCTTGA
AGGCCCTTAAGCTTGTGAAGGCTGACTTGGATGCCACCAAACGTGTAAAG
CAACAGCTCTCCACCAACGCCTGGAAGCCTTGGAGAAGGAAAAGAGCGAG
TGGATTCTCGACCGCGGGTCTCTTCACGCCCTGGTAGCGGCCGTGGAAAA
CAAGGACGCAGAACTCGCCACGTTACAAGGCCAGGTCGATGCACTGAAAC
TGGAGGTGCAATTCCTTTCCTCCATGGGGAAGGAGGGAGGGGCTGCCCTG
GGTGCGCCCTCGGAGGAGGAGAACGATGTCATTGTTGCAAGAAGAAGCCT
TGAAGGCCCTTAAGCTTGTGAAGGCTGACTTGGATGCCACCAAACGTGTA
AAGCAACAG

Synonyms

Publications