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Properties
| Property Name | Value |
|---|
| Product | a-pheromone processing metallopeptidase ste23 |
| Orig transcript id | gnl|cribi|Naga_102945g1.9904.mrna |
| Orig protein id | gnl|cribi|Naga_102945g1.9904 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:913622..914211 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5816 ID=rna5816|Name=rna5816|organism=Nannochloropsis gaditana|type=mRNA|length=651bp
ATGGGGAAAGATCTAGGTCGGATAGAGCAGAGTCCAGCCGATGACCGGAC
CTACCGCGCATTGGAGCTCGAAAATGGATTGCAGGTGCTTCTCATCCACG
ACCCGACCACGGACAAGGCTTCTGCGGCCATGAGCGTTGGTGTAGGCAGT
CTGCACGATGGTGATGTGGAAGGTTTGGCTCATTTTTGTGAGCATATGCT
CTTCTTGGGCACAGAAAAATACCCGGATGAACAGGCCTATTCTAAGTACC
TCAACCAAAACGGCGGGCATTCGAATGCCTACACCGACATGGACCACACT
TGTTACTTCTTCTCCGTCCTCCCGGGGTTCTTGGAAGGCGCCTTGGATCG
TTTCGCGCAATTTTTCATCTCCCCCCTCTTCACGGACAGCGCCACGGCGC
GCGAAATGCAGGCAGTGGACTCCGAAAACAATAAAAACCTCCAGAACGAC
GCGTGGCGCCTGCACCAGATCCATTGTGCAAGCGCCAAGCCCGGTCATCC
TCTCGGGCGTTTTCGGTGCGGCAGCCTGAGACACTCTTGGAGGATCCCCA
GGCCCGGGGTGTGGACGTTCGCGACTGCCTGCTCCGCTTTCATGCCTCCT
ACTACAGCAGCAACATCTGCCGGCTCGTGGTGCTCGGGCGAGAACCCCTA
G back to topprotein sequence of rna5816 >rna5816-protein ID=rna5816-protein|Name=rna5816|organism=Nannochloropsis gaditana|type=polypeptide|length=160bp
MTIVPVMDLRLLQLFWPLPPQRARYASAPTRYLSHLLGHEGAGSVLSYLK
AKQWANELSAGGQFDQREWASLDISIDLTDEGVAHAREVVEVVYAYLRLL
REAGPQRYVWEEMEQTAANSFRFLSKQQPMSYTSALSHRMHKYPPQHFIS
GAGTILLRFA back to topmRNA from alignment at CM002466.1:913622..914211+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5816 ID=rna5816|Name=rna5816|organism=Nannochloropsis gaditana|type=mRNA|length=590bp|location=Sequence derived from alignment at CM002466.1:913622..914211+ (Nannochloropsis gaditana)
agacGTCCCCTTCACCAGCGCCGAGCTGGGGCACTGGATGACCATCGTGC
CCGTCATGGACTTGCGCCTCCTGCAGCTCTTttggcccctgcccccccaa
CGCGCCCGGTACGCCTCGGCGCCCACCCGCTACCTCTCCCACCTGCTCGG
GCACGAGGGCGCGGGCTCCGTCTTGTCCTACTTGAAAGCCAAACAGTGGG
CGAACGAACTCTCTGCGGGGGGGCAGTTCGATCAACGGGAATGGGCCTCC
CTGGACATATCCATTGACCTCACGGACGAAGGGGTAGCGCACgcgcggga
ggtggtggaagtCGTCTATGCGTACTTGCGTTTgctgcgggaggcggggc
cgcAGCGGTACGTGTgggaagagatggagcagACGGCGGCGAACAGCTTC
CGTTTCCTCTCGAAACAGCAGCCAATGTCCTACACGAGTGCCCTGTCCCA
CCGCATGCACAAGTATCCGCCCCAACACTTCATATccggtgggtggggag
gggtgggaggccgggaagggggagggaggggttgtgtggaggagggcgca
tGGGAGAGGGGCTGGCACCATCTTGCTCCGTTTTGCCTGA back to topCoding sequence (CDS) from alignment at CM002466.1:913622..914211+ >rna5816 ID=rna5816|Name=rna5816|organism=Nannochloropsis gaditana|type=CDS|length=966bp|location=Sequence derived from alignment at CM002466.1:913622..914211+ (Nannochloropsis gaditana)
ATGACCATCGTGCCCGTCATGGACTTGCGCCTCCTGCAGCTCTTttggcc
cctgcccccccaaCGCGCCCGGTACGCCTCGGCGCCCACCCGCTACCTCT
CCCACCTGCTCGGGCACGAGGGCGCGGGCTCCGTCTTGTCCTACTTGAAA
GCCAAACAGTGGGCGAACGAACTCTCTGCGGGGGGGCAGTTCGATCAACG
GGAATGGGCCTCCCTGGACATATCCATTGACCTCACGGACGAAGGGGTAG
CGCACgcgcgggaggtggtggaagtCGTCTATGCGTACTTGCGTTTgctg
cgggaggcggggccgcAGCGGTACGTGTgggaagagatggagcagACGGC
GGCGAACAGCTTCCGTTTCCTCTCGAAACAGCAGCCAATGTCCTACACGA
GTGCCCTGTCCCACCGCATGCACAAGTATCCGCCCCAACACTTCATATcc
gGGGCTGGCACCATCTTGCTCCGTTTTGCCTGAATGACCATCGTGCCCGT
CATGGACTTGCGCCTCCTGCAGCTCTTttggcccctgcccccccaaCGCG
CCCGGTACGCCTCGGCGCCCACCCGCTACCTCTCCCACCTGCTCGGGCAC
GAGGGCGCGGGCTCCGTCTTGTCCTACTTGAAAGCCAAACAGTGGGCGAA
CGAACTCTCTGCGGGGGGGCAGTTCGATCAACGGGAATGGGCCTCCCTGG
ACATATCCATTGACCTCACGGACGAAGGGGTAGCGCACgcgcgggaggtg
gtggaagtCGTCTATGCGTACTTGCGTTTgctgcgggaggcggggccgcA
GCGGTACGTGTgggaagagatggagcagACGGCGGCGAACAGCTTCCGTT
TCCTCTCGAAACAGCAGCCAATGTCCTACACGAGTGCCCTGTCCCACCGC
ATGCACAAGTATCCGCCCCAACACTTCATATccgGGGCTGGCACCATCTT
GCTCCGTTTTGCCTGA back to top
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