rna5813, rna5813 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5813
Unique Name	rna5813
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1176
Alignment location	CM002466.1:906070..909261 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100432g3.5739.mrna
Orig protein id	gnl\|cribi\|Naga_100432g3.5739
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:906070..909261 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100432g3	gene5613	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5813	rna5813-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24876.1	cds5798	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:906070..909261+
coding sequence from alignment at CM002466.1:906070..909261+

mRNA sequence

>rna5813 ID=rna5813|Name=rna5813|organism=Nannochloropsis gaditana|type=mRNA|length=1176bp
ATGCTTCCAACGTCCACTCATTTATTTCACCGTCTTTCCCAGGTGAGTCG
AGACATCGCCATGCATGGCTACTGGGAGATGGAAAACATGTCCGTCCTCC
TTCTCCTTCTCGAGCGAGCACGCTGGCAGCGGCGGGAGTGGCGGCATCCG
GAGTCTCCTTCCCGCCCGCCCCGTCGGGATGAGCTCGTCATGTTGGACGT
TGGAGGGAATCTGGGTGCATACACACTATGCCTCGCGACAGCCGGCTTCC
GCGTTCTGACTTTCGAAGCCATGCGCCGCAATATTCAAGCCATCCGCGAA
GGCATTTGTCGCAATTCAGGGCTGAAAGAGAGAGTGATCCTGTTGGAAAA
GGGCTTAGCTGAGAAGGAGGAGACGTGTACGCTGGTAGTGGACAAGGAGA
ATATCGGCGACGGGATCACGCGATGCCAAGGCCAGGGCGTGAGCCTCGGT
TCGGAGGAGGTCAGAGAAGACGCCATTCAAGTCACGACTTTGGATCGCGC
TCTCTACTGCCCACAAAGCAGCCGTGACGCTGTGCCCTCTTTTTACACAG
GCCGACCCGCGGCACTGAAAATGGACGTGGAAGGCTTCGAAATGCTGGTG
GTACAGGGGGGGCAAGGGTTCTTGAATACCTCGGACCTGGCAGTAGTCCT
CCACGAGAACGGCCACATGCCCTTCGAGAAGCGTAAGTATCTGCTGGAAT
ACTTTGTGGACCGGGGGTACGTCTTTCTCTGCCCCGAAGAGATGTACGAG
TGGGTAGACGGGCGGGGAGGGAAGAGAGGGAGAAAGAGAAAAGTACCCAA
AATCGAGGCCTTCGCGGAATTCGACGAACGGATTTTTGACTGCTGGGACA
TTGCCTGGGTGAAGAAGGAGGATGTGGAAGTGGAGGCCCCCCGCGGGGGG
CGAGGGCAGCGATACTGGCTCCTGTTGGACTGACGGGAAGAGTGATCGGG
CAAGGCCATGCCAAGAGAGAGAAATAGTCGAGGGAGGTCGGCCTCCTTTC
CCCCACTTTGGTCTCCTATTTCTATTCTCCCCGACTTTCTTGGGGGTTCC
GGCTGAGTGTTCGGGCTGGCTAAAGACGGCCTTGGAAAAGCGCGCGGGGA
GAAATATGAACCCCGTTCTCGGCTTTTTTGAAAGAAAAATAATGTTGCTG
GAATGATTCCAACCAAAAAATAAAAA

protein sequence of rna5813

>rna5813-protein ID=rna5813-protein|Name=rna5813|organism=Nannochloropsis gaditana|type=polypeptide|length=575bp
MPSTATHSRPRFDKKVATRTTEATSTSLSTEGMAVTVPQAEAAAPPTASD
MEIVSASETGSKPSRGAATTAGTPIGDTISVTTARAQSTDPGVDSDAIMS
GQNVLGPPPRMATDLGLAEAARTQDDGRRPRQEHPPDVNATKKARKRTAI
LARQLEEARAERMAEVERLHAYYRGRTFHVPAGREGGREGGREGGEYEVL
MVYSDVALADGPHALVKHKASGNVCCRPPVSVHRYLAHFFPRPPLPLRPS
PPARSPALAAPHPPRLPRTVATKPAKNRTTAVVSVDHPNQPRPFSFPPLN
AGDLLLPERPLATSKQVRKPSVTQADYALPPRPGGSRVGYAGDTSKDAAA
VAWPANGAAQKGKGAPASVPERREAEHAFINPSLSSSRMAPALQPRRTST
HTALPSAAVLEPISQSFLRKLPGPDPPLSPPGRSPALTPPLPPSLPPPLA
PSPSPSPSTPLGPLYQTVSSFLSAPSPQPTPLVLDPCANLDIGENSRDRS
ERCPKGRDDNCVSSSLLGEKRRRGMGERRERRRKGDRRRGALQHPAPRTQ
VLILLSSLGRSSVNIEADGAEKVRH

mRNA from alignment at CM002466.1:906070..909261+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5813 ID=rna5813|Name=rna5813|organism=Nannochloropsis gaditana|type=mRNA|length=3192bp|location=Sequence derived from alignment at CM002466.1:906070..909261+ (Nannochloropsis gaditana)
ATGCCATCCACAGCGACACATAGCAGGCCCAGATTCGACAAGAAAGTAGC
GACGAGAACGACGGAAGCCACATCGACTTCTTTGAGCACAGAAGGTATGG
CAGTAACCGTTCCACAGGCAGAAGCGGCGGCACCGCCGACAGCATCTGAC
ATGGAAATTGTCAGTGCGAGTGAAACGGGATCAAAGCCATCGCGTGGGGC
AGCCACGACCGCAGGGACGCCGATCGGCGACACCATCTCGGTCACGACGG
CGCGTGCCCAATCCACCGATCCAGGAGTCGATAGCGACGCGATCATGTCG
GGGCAAAACGTGCTCGGACCCCCGCCACGGATGGCCACAGATCTCGTACG
GAGGAATCCAACCGGAGCCCATGGGCCACTCCCCTTGGCAAGAACACAGG
CCAGAGCGCCGGACCTGGATGTGGAATCACACGGCAGGGATGGTGTTGCG
GACagcggcggagaagggagggagggaggagaggagggagggagggaggg
agggagggagggaggggaggaggacaaggcgggtaAGGAGGACTTCTTTG
TCTGGTTTCTCGACTCTCCCATGGCGCTGGACGCTTCACAACCCGtgctc
caccctcttctcccctcgcgaacgggggggagggatcgaggaAGCGCCAG
GGTTGCATCAAGTAGCAgcgaccccgccctcctttccttcctcaagagga
cggaggccgcGCTGGGCCCGCCGTGCGAGGGGCCCTCGCAGGCGGTAACC
GAGGTTCAGGCTGCATGGAGAGCACAAACGGCACAAGCGCAGGAGAGGGG
TagtgaggaaaggaaaggaggacgacagggAAATGGGGAGGtgcagaagg
gaagggtggtggaggtgattgtggagaggggagggaaagacggtaggggg
ggagacaagggcCTAAGTCGTGTGATAGCGATGGACAAGGAGGCGTACAT
GGAGTATGtacagggaaaaggaggaagaaaacgaggaagaggagaaggag
ggaaggcacagagaggcagagggggctacgggggaggagaaagggccCCG
GGCGAGGCAGTggacagggaaagggaaaggaggaagaagcagcagaaTCA
GCCCCTGAAAATTGAGCCGTCGTCCCTGCCGCACGCACAGACGAGACCAG
GCGTGGCGCGAACGTCTCCAGGCGTAAACCGCTTTCCCATGTCAGCCACC
CCAGCCgctgccgccacctcccctgcatcctccttcgcttcctcccccag
ggcctccacccctccctccccaggcccgtGGGACGGGAGacagggtggga
agggcagagaggggggagggagggggatgctGGCACCGAGTAGGCCGTCG
ACCCCGCCTGCGTtgctcccaccctccttgggatccctccctcgggccct
gcctccctccagtgGCTACTACGACGGCAACCACGCCAAGATGGAGGGTC
GAAAGGGCACCGCCAATAGCATCGATCCTGTCTTGGCACGCTGGTCGGGC
GTGCCGATGCGAAGTTCCACGTGGGGCTTGCTCCAGCAGGCAGGACAGGT
GGTGGCGCGGTGCCAGCGCGGAaagccggagggagggaggaagagggaga
gggaatcggagggtgggagaggggtgaggagtaggggggaggggcacaag
gaggaggaagcggggaatATCAAGCCATTGAAAAGCCAGACTCTTCGCAC
CCAGGGCCTTGCCGAGGCCGCTCGGACGCAGGATGATGGAAGACGCCCTC
GACAGGAGCATCCGCCGGACGTGAATGCCacgaaaaaggcgcgaaaacGG
ACAGCGATATTGGCGCGTCAGTTGGaagaggcgcgggcggagcGGATGGC
AGAAGTCGAGCGTTTGCACGCCTACTACCGGGGGCGGaccttccacgtcc
ccgcagggcgggagggagggcgggagggagggcgggagggaggggagtaC
GAAGTCCTCATGGTCTACTCGGATGTCGCCCTTGCCGACGGTCCCCATGC
GCTTGTCAAGCACAAAGCCTCGGGTAACGTGTGCTGTCGCccccccgtct
ccgtccATCGTTATCTGgcacatttttttccccgccccccccttcccctt
cggccttccccgcctgcccgctcccccgcccttgccgccccCCACCCGCC
TAGGCTTCCGAGAACGGTGGCGACCAAGCCTGCAAAGAACCGGACCACCG
CTGTGGTAAGCGTAGACCATCCAAACCAACCtcggcctttttccttccct
cccctcaacGCCGGAGACCTCTTGCTCCCTGAGCGTCCCCTTGCGACGTC
CAAGCAGGTGAGGAAGCCTTCGGTCACCCAGGCGGATTATGCCCTACCAC
CCCGACCAGGGGGCTCACGAGTGGGCTATGCTGGCGACACTTCCAAGGAt
gcggcggccgtggcgtgGCCGGCAAATGGGGCTGCacagaagggaaaggg
ggctcCGGCGTCCGTcccggagaggagggaagcggagcaTGCCTTTATCa
acccttccttgtcctcgagTCGGATGGCACCTGCCCTACAGCCACGAAGA
ACTAGCACCCACACTGCTCTTCCCAGCGCGGCAGTGCTAGAACCCATCTC
CCAAAGCTTTCTTCGAAAACTACCCGGACCTGACCCTCCCCTATCCCCTC
CTGGacgctcccccgccctgactcccccccttcctccctccctccctccc
cctcttgctccttcgccttccccgtCGCCTTCCACACCCCTGGGCCCGCT
TTACCAGACGgtatcctccttcttgtcagCGCCCTCGCCCCAGCCCACGC
CCCTCGTCCTGGACCCCTGTGCAAATCTCGATATCGGAGAAAACAGCCGC
GACCGCAGCGAGCGCTGCCccaagggaagggatgacaATTGTGTCAGCTC
CAGTCTTCTCGgcgagaaggtggaggacgtggcggtggacgagggcatgg
gccgaggcggggggggcagttTTGGGGACCGGCAACGCGAGAAGCGGGTG
GTCCTGTGAAAGACTAcccgaaagaggaggagagggatgggggaaagaag
ggaacggcgaaggaagggagatagGCGAAGGGGAGCTCTACAACATCCAG
CACCGAGGACACAGGTTTTAATATTGCTGTCTTCATTAGGCCGTAGTAGC
GTGAACATCGAAGCTGATGGCGCGGAAAAAGTTCGACATTGA

Coding sequence (CDS) from alignment at CM002466.1:906070..909261+

>rna5813 ID=rna5813|Name=rna5813|organism=Nannochloropsis gaditana|type=CDS|length=5184bp|location=Sequence derived from alignment at CM002466.1:906070..909261+ (Nannochloropsis gaditana)
ATGCCATCCACAGCGACACATAGCAGGCCCAGATTCGACAAGAAAGTAGC
GACGAGAACGACGGAAGCCACATCGACTTCTTTGAGCACAGAAGGTATGG
CAGTAACCGTTCCACAGGCAGAAGCGGCGGCACCGCCGACAGCATCTGAC
ATGGAAATTGTCAGTGCGAGTGAAACGGGATCAAAGCCATCGCGTGGGGC
AGCCACGACCGCAGGGACGCCGATCGGCGACACCATCTCGGTCACGACGG
CGCGTGCCCAATCCACCGATCCAGGAGTCGATAGCGACGCGATCATGTCG
GGGCAAAACGTGCTCGGACCCCCGCCACGGATGGCCACAGATCTCGGCCT
TGCCGAGGCCGCTCGGACGCAGGATGATGGAAGACGCCCTCGACAGGAGC
ATCCGCCGGACGTGAATGCCacgaaaaaggcgcgaaaacGGACAGCGATA
TTGGCGCGTCAGTTGGaagaggcgcgggcggagcGGATGGCAGAAGTCGA
GCGTTTGCACGCCTACTACCGGGGGCGGaccttccacgtccccgcagggc
gggagggagggcgggagggagggcgggagggaggggagtaCGAAGTCCTC
ATGGTCTACTCGGATGTCGCCCTTGCCGACGGTCCCCATGCGCTTGTCAA
GCACAAAGCCTCGGGTAACGTGTGCTGTCGCccccccgtctccgtccATC
GTTATCTGgcacatttttttccccgccccccccttccccttcggccttcc
ccgcctgcccgctcccccgcccttgccgccccCCACCCGCCTAGGCTTCC
GAGAACGGTGGCGACCAAGCCTGCAAAGAACCGGACCACCGCTGTGGTAA
GCGTAGACCATCCAAACCAACCtcggcctttttccttccctcccctcaac
GCCGGAGACCTCTTGCTCCCTGAGCGTCCCCTTGCGACGTCCAAGCAGGT
GAGGAAGCCTTCGGTCACCCAGGCGGATTATGCCCTACCACCCCGACCAG
GGGGCTCACGAGTGGGCTATGCTGGCGACACTTCCAAGGAtgcggcggcc
gtggcgtgGCCGGCAAATGGGGCTGCacagaagggaaagggggctcCGGC
GTCCGTcccggagaggagggaagcggagcaTGCCTTTATCaacccttcct
tgtcctcgagTCGGATGGCACCTGCCCTACAGCCACGAAGAACTAGCACC
CACACTGCTCTTCCCAGCGCGGCAGTGCTAGAACCCATCTCCCAAAGCTT
TCTTCGAAAACTACCCGGACCTGACCCTCCCCTATCCCCTCCTGGacgct
cccccgccctgactcccccccttcctccctccctccctccccctcttgct
ccttcgccttccccgtCGCCTTCCACACCCCTGGGCCCGCTTTACCAGAC
GgtatcctccttcttgtcagCGCCCTCGCCCCAGCCCACGCCCCTCGTCC
TGGACCCCTGTGCAAATCTCGATATCGGAGAAAACAGCCGCGACCGCAGC
GAGCGCTGCCccaagggaagggatgacaATTGTGTCAGCTCCAGTCTTCT
CGgcgagaagaggaggagagggatgggggaaagaagggaacggcgaagga
agggagatagGCGAAGGGGAGCTCTACAACATCCAGCACCGAGGACACAG
GTTTTAATATTGCTGTCTTCATTAGGCCGTAGTAGCGTGAACATCGAAGC
TGATGGCGCGGAAAAAGTTCGACATTGAATGCCATCCACAGCGACACATA
GCAGGCCCAGATTCGACAAGAAAGTAGCGACGAGAACGACGGAAGCCACA
TCGACTTCTTTGAGCACAGAAGGTATGGCAGTAACCGTTCCACAGGCAGA
AGCGGCGGCACCGCCGACAGCATCTGACATGGAAATTGTCAGTGCGAGTG
AAACGGGATCAAAGCCATCGCGTGGGGCAGCCACGACCGCAGGGACGCCG
ATCGGCGACACCATCTCGGTCACGACGGCGCGTGCCCAATCCACCGATCC
AGGAGTCGATAGCGACGCGATCATGTCGGGGCAAAACGTGCTCGGACCCC
CGCCACGGATGGCCACAGATCTCGGCCTTGCCGAGGCCGCTCGGACGCAG
GATGATGGAAGACGCCCTCGACAGGAGCATCCGCCGGACGTGAATGCCac
gaaaaaggcgcgaaaacGGACAGCGATATTGGCGCGTCAGTTGGaagagg
cgcgggcggagcGGATGGCAGAAGTCGAGCGTTTGCACGCCTACTACCGG
GGGCGGaccttccacgtccccgcagggcgggagggagggcgggagggagg
gcgggagggaggggagtaCGAAGTCCTCATGGTCTACTCGGATGTCGCCC
TTGCCGACGGTCCCCATGCGCTTGTCAAGCACAAAGCCTCGGGTAACGTG
TGCTGTCGCccccccgtctccgtccATCGTTATCTGgcacatttttttcc
ccgccccccccttccccttcggccttccccgcctgcccgctcccccgccc
ttgccgccccCCACCCGCCTAGGCTTCCGAGAACGGTGGCGACCAAGCCT
GCAAAGAACCGGACCACCGCTGTGGTAAGCGTAGACCATCCAAACCAACC
tcggcctttttccttccctcccctcaacGCCGGAGACCTCTTGCTCCCTG
AGCGTCCCCTTGCGACGTCCAAGCAGGTGAGGAAGCCTTCGGTCACCCAG
GCGGATTATGCCCTACCACCCCGACCAGGGGGCTCACGAGTGGGCTATGC
TGGCGACACTTCCAAGGAtgcggcggccgtggcgtgGCCGGCAAATGGGG
CTGCacagaagggaaagggggctcCGGCGTCCGTcccggagaggagggaa
gcggagcaTGCCTTTATCaacccttccttgtcctcgagTCGGATGGCACC
TGCCCTACAGCCACGAAGAACTAGCACCCACACTGCTCTTCCCAGCGCGG
CAGTGCTAGAACCCATCTCCCAAAGCTTTCTTCGAAAACTACCCGGACCT
GACCCTCCCCTATCCCCTCCTGGacgctcccccgccctgactccccccct
tcctccctccctccctccccctcttgctccttcgccttccccgtCGCCTT
CCACACCCCTGGGCCCGCTTTACCAGACGgtatcctccttcttgtcagCG
CCCTCGCCCCAGCCCACGCCCCTCGTCCTGGACCCCTGTGCAAATCTCGA
TATCGGAGAAAACAGCCGCGACCGCAGCGAGCGCTGCCccaagggaaggg
atgacaATTGTGTCAGCTCCAGTCTTCTCGgcgagaagaggaggagaggg
atgggggaaagaagggaacggcgaaggaagggagatagGCGAAGGGGAGC
TCTACAACATCCAGCACCGAGGACACAGGTTTTAATATTGCTGTCTTCAT
TAGGCCGTAGTAGCGTGAACATCGAAGCTGATGGCGCGGAAAAAGTTCGA
CATTGAATGCCATCCACAGCGACACATAGCAGGCCCAGATTCGACAAGAA
AGTAGCGACGAGAACGACGGAAGCCACATCGACTTCTTTGAGCACAGAAG
GTATGGCAGTAACCGTTCCACAGGCAGAAGCGGCGGCACCGCCGACAGCA
TCTGACATGGAAATTGTCAGTGCGAGTGAAACGGGATCAAAGCCATCGCG
TGGGGCAGCCACGACCGCAGGGACGCCGATCGGCGACACCATCTCGGTCA
CGACGGCGCGTGCCCAATCCACCGATCCAGGAGTCGATAGCGACGCGATC
ATGTCGGGGCAAAACGTGCTCGGACCCCCGCCACGGATGGCCACAGATCT
CGGCCTTGCCGAGGCCGCTCGGACGCAGGATGATGGAAGACGCCCTCGAC
AGGAGCATCCGCCGGACGTGAATGCCacgaaaaaggcgcgaaaacGGACA
GCGATATTGGCGCGTCAGTTGGaagaggcgcgggcggagcGGATGGCAGA
AGTCGAGCGTTTGCACGCCTACTACCGGGGGCGGaccttccacgtccccg
cagggcgggagggagggcgggagggagggcgggagggaggggagtaCGAA
GTCCTCATGGTCTACTCGGATGTCGCCCTTGCCGACGGTCCCCATGCGCT
TGTCAAGCACAAAGCCTCGGGTAACGTGTGCTGTCGCccccccgtctccg
tccATCGTTATCTGgcacatttttttccccgccccccccttccccttcgg
ccttccccgcctgcccgctcccccgcccttgccgccccCCACCCGCCTAG
GCTTCCGAGAACGGTGGCGACCAAGCCTGCAAAGAACCGGACCACCGCTG
TGGTAAGCGTAGACCATCCAAACCAACCtcggcctttttccttccctccc
ctcaacGCCGGAGACCTCTTGCTCCCTGAGCGTCCCCTTGCGACGTCCAA
GCAGGTGAGGAAGCCTTCGGTCACCCAGGCGGATTATGCCCTACCACCCC
GACCAGGGGGCTCACGAGTGGGCTATGCTGGCGACACTTCCAAGGAtgcg
gcggccgtggcgtgGCCGGCAAATGGGGCTGCacagaagggaaagggggc
tcCGGCGTCCGTcccggagaggagggaagcggagcaTGCCTTTATCaacc
cttccttgtcctcgagTCGGATGGCACCTGCCCTACAGCCACGAAGAACT
AGCACCCACACTGCTCTTCCCAGCGCGGCAGTGCTAGAACCCATCTCCCA
AAGCTTTCTTCGAAAACTACCCGGACCTGACCCTCCCCTATCCCCTCCTG
Gacgctcccccgccctgactcccccccttcctccctccctccctccccct
cttgctccttcgccttccccgtCGCCTTCCACACCCCTGGGCCCGCTTTA
CCAGACGgtatcctccttcttgtcagCGCCCTCGCCCCAGCCCACGCCCC
TCGTCCTGGACCCCTGTGCAAATCTCGATATCGGAGAAAACAGCCGCGAC
CGCAGCGAGCGCTGCCccaagggaagggatgacaATTGTGTCAGCTCCAG
TCTTCTCGgcgagaagaggaggagagggatgggggaaagaagggaacggc
gaaggaagggagatagGCGAAGGGGAGCTCTACAACATCCAGCACCGAGG
ACACAGGTTTTAATATTGCTGTCTTCATTAGGCCGTAGTAGCGTGAACAT
CGAAGCTGATGGCGCGGAAAAAGTTCGACATTGA

Synonyms

Publications