rna5810, rna5810 (mRNA) Nannochloropsis gaditana

Overview
Namerna5810
Unique Namerna5810
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length885
Alignment locationCM002466.1:894752..896376 -

Link to JBrowse

Properties
Property NameValue
ProductPutative thiol-disulfide oxidoreductase DCC
Orig transcript idgnl|cribi|Naga_100265g1.8301.mrna
Orig protein idgnl|cribi|Naga_100265g1.8301
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:894752..896376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100265g1gene5610Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24881.1cds5795Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5810rna5810-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5810 ID=rna5810|Name=rna5810|organism=Nannochloropsis gaditana|type=mRNA|length=885bp
ATGGCCACATTTGCCTCGACGCCGGTCACCACTGGAAAGCAAAGCAAGGC
CGGTGGTGAGCGTCAACCTGGTTTGGAGCACGAAATGAACCCTAAACCGG
AAGTGATTCGATCAAATTATGAAGGCGCTAATAAATTGGCTGGTACGGTA
GCGATTATCACAGGCGCAGATAGTGGGATCGGTCGAGCTGTCGCAGTTCA
TTTTGCACGGGAGGGGGCCAAAGGCATAACTATTGCCTATTTGGACGAGC
ACAAAGATGCCCAAGAAACAAAACGCATGGTAGAGGAAGAAGGTAGTCAA
GCCATTCTTATTGCAGGAGATGTGGGGGATAATGAACACTGCAAAAGTAT
TGTCGAGCTGACTTTGAAAACGTTTGGCGAGCTAAGCTGCTTGGTTAACA
ATGCGGCAGAGCAACACATCTGCAACGACTTCTTGGACATTACGAGAAAG
CAGCTCGAGTGTACATTCCGCACAAATATTCTGTCCTATTTCTTCATGGC
CCAAGCTGCGCTGCCGCATTTAAAGGCTGGTAGCTCCATCATCAACACAA
CTAGCGTGACAGCTTACAAAGGAATGCCACAGTTGATCGACTACAGCAGC
GCCAAGGGTGCAATCGTCTCGTTCACTCGTTCCCTTGCCATCAATCTCGC
CAATAAGGACATCAGGGTGAACGGGGTGGCGCCTGGACCGATTTGGACGC
CTCTTATCCCTGCGACGTTCCCTGAGGAGGCGAAAGTAGAAAAATTCGGC
CAGGAGGTGCCCATGGAACGCAGTGCTCAGCCCAGCGAGGTGGCCCCCTC
TTATGTCTTCCTGGCGAGCCCTGATGGATCGTTTTTCAACGGACAGGTCT
TGCATCCCAATGGAGGGACGGTGATTAATGGCTAA
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protein sequence of rna5810

>rna5810-protein ID=rna5810-protein|Name=rna5810|organism=Nannochloropsis gaditana|type=polypeptide|length=237bp
MPAVSSRVRGFFTLLAAFQLLGMRAFVFRSQVSTKLVSRCTRHRWIPQGS
TARFSTASAPSSSSGSGSTGAKSQPESPRPSMDEAQKTFNKVFPVNTAGA
DLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGR
DPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLP
QEMRDGAYDTVAENRYSILGKREECRLPDPGDDRFIA
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mRNA from alignment at CM002466.1:894752..896376-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5810 ID=rna5810|Name=rna5810|organism=Nannochloropsis gaditana|type=mRNA|length=1625bp|location=Sequence derived from alignment at CM002466.1:894752..896376- (Nannochloropsis gaditana)
TCTTCGGAAGAAGACATCGTCCTCGCCTGAGGTGCAAAAGGGGAAAAATG
AATTTTGCTGCTGGCATCTACTACCAGGTTCAGGAGTTTGCAAAGCGATG
CAATAGCTTCTGAGCGATCGTCACAAATCCCCTGAAACCAGTACGTGCAT
CCCAATGTTGCATGCCGGAACATATTTCAATGCGTCACTCTGTGCCGGTT
GTCAACTATTCCCAGCATGCGCATGTCATGAATGGTGCGGTATTGAAACG
GAGTGCAAGTGTTGTCCCTGGGAGACCGGTCTTGGCGACGAGAGGTAGGC
ATGTCCGGCGCTGCTCCAAACTATGACTCAGCCCTCACACTGACTTCTCA
CGCCCAGGAAAAAGGCGGAAAGGACCAGCACGAGGTGGTAAAGTGCTGCT
ACAAGGACCTGCGGCGGCAAATTGTTTATTTTTTTCATGCCCGCGGTCTC
CTCTCGCGTGCGTGGCTTTTTTACCCTTCTGGCCGCGTTCCAGCTACTCG
GGATGCGCGCATTTGTCTTTCGATCCCAAGTGAGCACCAAATTGGTTTCA
AGATGTACACGTCACAGATGGATACCACAGGGGAGCACTGCGCGATTTAG
CACTGCTTCCGCCCCTTCCTCGTCGTCAGGCTCGGGCTCCACGGGCGCAA
AGAGTCAGCCCGAGTCCCCCAGACCCAGCATGGACGAGGCGCAGAAGACG
TTCAACAAGGTGTTCCCCGTGAATACTGCAGGAGCCGATTTGCGCCCTGT
CGTGCTCTTTGACGGTGTTTGCATGTTTTGCAACCGTGGCATTGACACTC
TACTGGCCCTGGATGTGAACAGGAAAATCCGCGTGGCCCCCCTACAAAGC
GAACTTGGCTGTGCGCTCATGACGGTGTGCGGCCGTGATCCGGATGACCT
TTCATCCATGCTGGTGGTGGAAGCCGATAAAAGCCTTTTCTCTAAATCTG
ATGCGGCGATTCGGATTGCCGAAGTGGCGGCGCCCCATCCCTTGCTGGGT
GGGGCGCTGGAAAGAGCTGCGCGCTTGCTTCTACCACAGGAGATGCGAGA
CGGGGCGTACGACACAGTAGCTGAGAACCGGTACAGCATATTGGGAAAGC
GGGAGGAATGTCGGCTGCCGGATCCAGGGGATGACCGCTTTATCGCCTAA
GAGACAGGCGCTGTACAGAAAGACCGATGCCGGGGCCCGTAAAGAGCCGC
ACAGGGATGGCTTGGAGTGCCTGACGCGAATGCCTTGGCGCGCAGGCATG
TCAGTGGGTGGATCGCACGGTCTTCCGAATCGCTGGCAGAGAGATCCCGG
CTTCAAATCACGATTTTCACGGTTGCCTACGGCTTGGACCGGAGACTTGG
ACAAAATGCATCTGCGTGGACGTGCATGGCGTAAAATCGGTGCGTTTGGT
GCTCTATTGGCACGCACGCTTCCTTACGAATTTAACAAATTACGAATTCA
AGCTGTCGTGCCCGTTATAAAGTGGCAGAAGGGATGGCGAAACCGTACGG
ACGACGCTTGCACTGCAAGGACGCGCTCCGGCGCCACCCTCAGATGCACC
ATGGCCACCCTTTTCATCGATGTTGACAGACAAGCAAAGAAAGAAGTCAT
AGCCATGCCAAAATTTGTTTTTTGT
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Coding sequence (CDS) from alignment at CM002466.1:894752..896376-

>rna5810 ID=rna5810|Name=rna5810|organism=Nannochloropsis gaditana|type=CDS|length=714bp|location=Sequence derived from alignment at CM002466.1:894752..896376- (Nannochloropsis gaditana)
ATGCCCGCGGTCTCCTCTCGCGTGCGTGGCTTTTTTACCCTTCTGGCCGC
GTTCCAGCTACTCGGGATGCGCGCATTTGTCTTTCGATCCCAAGTGAGCA
CCAAATTGGTTTCAAGATGTACACGTCACAGATGGATACCACAGGGGAGC
ACTGCGCGATTTAGCACTGCTTCCGCCCCTTCCTCGTCGTCAGGCTCGGG
CTCCACGGGCGCAAAGAGTCAGCCCGAGTCCCCCAGACCCAGCATGGACG
AGGCGCAGAAGACGTTCAACAAGGTGTTCCCCGTGAATACTGCAGGAGCC
GATTTGCGCCCTGTCGTGCTCTTTGACGGTGTTTGCATGTTTTGCAACCG
TGGCATTGACACTCTACTGGCCCTGGATGTGAACAGGAAAATCCGCGTGG
CCCCCCTACAAAGCGAACTTGGCTGTGCGCTCATGACGGTGTGCGGCCGT
GATCCGGATGACCTTTCATCCATGCTGGTGGTGGAAGCCGATAAAAGCCT
TTTCTCTAAATCTGATGCGGCGATTCGGATTGCCGAAGTGGCGGCGCCCC
ATCCCTTGCTGGGTGGGGCGCTGGAAAGAGCTGCGCGCTTGCTTCTACCA
CAGGAGATGCGAGACGGGGCGTACGACACAGTAGCTGAGAACCGGTACAG
CATATTGGGAAAGCGGGAGGAATGTCGGCTGCCGGATCCAGGGGATGACC
GCTTTATCGCCTAA
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Synonyms
Publications