EWM24881.1, cds5795 (CDS) Nannochloropsis gaditana

Overview
NameEWM24881.1
Unique Namecds5795
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:895227..895940 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24881.1
ProductPutative thiol-disulfide oxidoreductase DCC
Orig transcript idgnl|cribi|Naga_100265g1.8301.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:895227..895940 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR007263DUF393
Homology
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|585106506|gb|EWM24881.1| (Putative thiol-disulfide oxidoreductase DCC [Nannochloropsis gaditana])

HSP 1 Score: 481.1 bits (1237), Expect = 7.608e-172
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
Query:    1 MPAVSSRVRGFFTLLAAFQLLGMRAFVFRSQVSTKLVSRCTRHRWIPQGSTARFSTASAPSSSSGSGSTGAKSQPESPRPSMDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPGDDRFIA 237
            MPAVSSRVRGFFTLLAAFQLLGMRAFVFRSQVSTKLVSRCTRHRWIPQGSTARFSTASAPSSSSGSGSTGAKSQPESPRPSMDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPGDDRFIA
Sbjct:    1 MPAVSSRVRGFFTLLAAFQLLGMRAFVFRSQVSTKLVSRCTRHRWIPQGSTARFSTASAPSSSSGSGSTGAKSQPESPRPSMDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPGDDRFIA 237          
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|553180099|ref|XP_005853346.1| (hypothetical protein NGA_0723100 [Nannochloropsis gaditana CCMP526] >gi|422295718|gb|EKU23017.1| hypothetical protein NGA_0723100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 314.694 bits (805), Expect = 3.328e-107
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0
Query:   82 MDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPGDDRFIA 237
            MDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELG ALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPGDDRFIA
Sbjct:    1 MDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGRALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPGDDRFIA 156          
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|1129184491|gb|OLP91065.1| (DCC family protein, chloroplastic [Symbiodinium microadriaticum])

HSP 1 Score: 125.946 bits (315), Expect = 2.510e-32
Identity = 70/158 (44.30%), Postives = 100/158 (63.29%), Query Frame = 0
Query:   81 SMDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVN-RKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPG-DDRFI 236
            S D A+  F ++F       D RP+VL+DGVC  CN  +D  L  D + R++R + LQSE+G  L+  CGR  +DLSSMLVV+ D    S+SDA + + +      +L G L +AA+ L+P+ +RDGAY+ VA+NRY +LG+R E RL   G +DRF+
Sbjct:   42 STDGAKVAFKELFY-----DDDRPIVLYDGVCNMCNSAVDVALQKDPDGRRLRFSALQSEVGRQLLVFCGRRAEDLSSMLVVKPDGECLSQSDAVVFVGQQLEGSSVLQG-LSKAAQALVPKPLRDGAYNVVAKNRYRVLGRRTELRLKQDGMEDRFV 193          
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|168022583|ref|XP_001763819.1| (predicted protein [Physcomitrella patens] >gi|162685063|gb|EDQ71461.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 117.857 bits (294), Expect = 1.318e-29
Identity = 66/137 (48.18%), Postives = 89/137 (64.96%), Query Frame = 0
Query:  101 DLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPG-DDRFI 236
            D RP+VLFDGVC FCN G++ +L  D   ++R+A LQSE G AL+   GR  DDLSS++++E D+S + KS+  +R A+         G+L     LL P   RD  YD VA NRYSILGKR++CR+ DP  +DRF+
Sbjct:   32 DSRPIVLFDGVCNFCNAGVNFVLDNDPEGRVRMAALQSEAGRALLLRAGRLSDDLSSLVLIEKDRS-YIKSEGVLRTAQYLGNLLPPVGSLG----LLFPLFFRDFVYDNVANNRYSILGKRDQCRVSDPRFNDRFV 163          
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|255079090|ref|XP_002503125.1| (predicted protein, partial [Micromonas commoda] >gi|226518391|gb|ACO64383.1| predicted protein, partial [Micromonas commoda])

HSP 1 Score: 115.161 bits (287), Expect = 8.094e-29
Identity = 63/135 (46.67%), Postives = 86/135 (63.70%), Query Frame = 0
Query:   95 VNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPL--LGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRL 227
            V+    D RPV+LFDGVC  CN G++  L +D   K+R A LQS  G AL+   GRDPDD+SS+++VE D + F KSDA +RIA   + +PL    G L      ++P  +RD  YD +A+NRY +LG ++ECRL
Sbjct:   13 VDYFATDKRPVILFDGVCNLCNGGVNFALDMDPPGKLRFAALQSTAGRALLRRAGRDPDDISSIVLVEEDAA-FVKSDAVLRIATYFSANPLFPFAGTLGP----VVPTFIRDAFYDAIADNRYDLLGMKDECRL 142          
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|145352983|ref|XP_001420812.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144581047|gb|ABO99105.1| predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 112.849 bits (281), Expect = 1.769e-27
Identity = 64/142 (45.07%), Postives = 88/142 (61.97%), Query Frame = 0
Query:  100 ADLRPVVLFDGVCMFCNRGIDTLLALDVNR---KIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRL-PDPGDDRFIA 237
            +D R +VL+DGVC  CN  ++  L  D +R    +R A LQS +G AL+   GRD DD+SS++ VEA  + ++KS+A +RI       P  G A  R A   +P+ + D  YD VA+NRYSILG+R+ECR   D  DDRF+A
Sbjct:   45 SDDRGIVLYDGVCNLCNGAVNFALRHDRDRARGSVRFAALQSSVGRALLVEAGRDADDISSIVYVEASGTAYAKSEAILRIGRDLLGAPFGGAA--RVAMWAVPRVVGDWVYDRVADNRYSILGRRDECRFGDDEDDDRFLA 184          
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|545356487|ref|XP_005643949.1| (DUF393-domain-containing protein [Coccomyxa subellipsoidea C-169] >gi|384245913|gb|EIE19405.1| DUF393-domain-containing protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 112.464 bits (280), Expect = 3.302e-27
Identity = 70/190 (36.84%), Postives = 104/190 (54.74%), Query Frame = 0
Query:   55 STASAPSSSSGSGSTGAKSQPESPRP------SMDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAE-VAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPG-DDRFI 236
            S+ S PS S   G    +SQ    RP      ++    +T            D RP++LFDGVC  C+ G+D  L  D    +R A LQS+ G  L+  CGR PDD+SS+++VE + + + KS+A +RIA+ ++AP+P L   L       LP   RD  YD +A++RY+I GK++ C+L +    DRF+
Sbjct:    5 SSFSRPSGSVHCGPGSCRSQFTQKRPVLATRKTLSCTNRTAASSSASAPFATDKRPIILFDGVCNLCHGGVDFALKNDSKANLRFAALQSDTGKRLLQRCGRRPDDISSIVLVEQN-ACYIKSEAILRIAKRLSAPYPALAQVL-----FPLPGFFRDLVYDRIADSRYNIFGKKDMCQLTNEDYADRFV 188          
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|567869263|ref|XP_006427253.1| (hypothetical protein CICLE_v10026597mg [Citrus clementina] >gi|557529243|gb|ESR40493.1| hypothetical protein CICLE_v10026597mg [Citrus clementina])

HSP 1 Score: 112.079 bits (279), Expect = 3.308e-27
Identity = 69/185 (37.30%), Postives = 99/185 (53.51%), Query Frame = 0
Query:   46 IPQGSTARFSTASAPSSSSGSGSTGAKSQPESPRPSMDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAE-VAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPD 229
            +P G  AR + +     S  +      S P+  R  +D      +  F       D RP++L+DGVC  CN G+  +   D NR+IR   LQSE G  L+   GR PDD+SS+++VE D+S + KSDA ++I E +  P P L   L+      +PQ +RD AYD +A NRY+I G+ + C L D
Sbjct:    5 VPGGGCARLAISHPAQVSRRTAVVATLSPPK--RDKVDYWVDATSSFFE-----PDSRPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRS-YIKSDAVLKIMEYIDLPFPQLAFFLQ-----FVPQFVRDFAYDNIANNRYNIFGRSDSCELYD 176          
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|397565651|gb|EJK44712.1| (hypothetical protein THAOC_36727, partial [Thalassiosira oceanica])

HSP 1 Score: 113.62 bits (283), Expect = 4.281e-27
Identity = 64/139 (46.04%), Postives = 89/139 (64.03%), Query Frame = 0
Query:  101 DLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLG-GALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPG--DDRFI 236
            D RPV+LFDGVC  CN  ++  L  D   K+R + LQS++G +L+   GR  DD+SS+++V  D + ++KSDA + I+E   P P +    L R A  L+PQ +RD  YD VA+NRYSI+G R+ECR    G  DDRF+
Sbjct:  103 DDRPVILFDGVCNLCNNAVNLALDWDPKGKLRFSALQSDVGRSLLQAHGRAADDISSIVLVRTDGA-YTKSDAILGISEELNPLPFVPMKPLSRLASGLVPQFLRDLIYDGVADNRYSIMGIRDECRFDADGEFDDRFV 240          
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|388507778|gb|AFK41955.1| (unknown [Lotus japonicus])

HSP 1 Score: 111.694 bits (278), Expect = 4.658e-27
Identity = 69/183 (37.70%), Postives = 98/183 (53.55%), Query Frame = 0
Query:   47 PQGSTARFS-TASAPSSSSGSGSTGAKSQPESPRPSMDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAE-VAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRL 227
            P  +  RFS T S+      + +    SQ  S   +  EA  +F           D RP++LFDGVC  CN G+  +   D N+ IR  PLQSE G  L+   GR PDD+SS+++VE D+S + KS+A ++I E +  P P L   ++      +P  +RD AYD VA NRY+I G+ E C +
Sbjct:    7 PSAAVGRFSSTVSSLRPRKLNNTFATLSQTRSEEANWVEATSSF--------FDQDKRPIMLFDGVCNLCNGGVKFVRDNDRNKTIRYEPLQSEAGKMLLRRSGRAPDDISSVVLVENDRS-YIKSEAVLKIMEYIDFPFPQLAFLVQ-----FVPLFIRDFAYDNVANNRYTIFGRSESCEI 175          
The following BLAST results are available for this feature:
BLAST of EWM24881.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106506|gb|EWM24881.1|7.608e-172100.00Putative thiol-disulfide oxidoreductase DCC [Nanno... [more]
gi|553180099|ref|XP_005853346.1|3.328e-10799.36hypothetical protein NGA_0723100 [Nannochloropsis ... [more]
gi|1129184491|gb|OLP91065.1|2.510e-3244.30DCC family protein, chloroplastic [Symbiodinium mi... [more]
gi|168022583|ref|XP_001763819.1|1.318e-2948.18predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|255079090|ref|XP_002503125.1|8.094e-2946.67predicted protein, partial [Micromonas commoda] >g... [more]
gi|145352983|ref|XP_001420812.1|1.769e-2745.07predicted protein [Ostreococcus lucimarinus CCE990... [more]
gi|545356487|ref|XP_005643949.1|3.302e-2736.84DUF393-domain-containing protein [Coccomyxa subell... [more]
gi|567869263|ref|XP_006427253.1|3.308e-2737.30hypothetical protein CICLE_v10026597mg [Citrus cle... [more]
gi|397565651|gb|EJK44712.1|4.281e-2746.04hypothetical protein THAOC_36727, partial [Thalass... [more]
gi|388507778|gb|AFK41955.1|4.658e-2737.70unknown [Lotus japonicus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5810rna5810Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications