EWM24881.1, cds5795 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|585106506|gb|EWM24881.1| (Putative thiol-disulfide oxidoreductase DCC [Nannochloropsis gaditana]) HSP 1 Score: 481.1 bits (1237), Expect = 7.608e-172 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0 Query: 1 MPAVSSRVRGFFTLLAAFQLLGMRAFVFRSQVSTKLVSRCTRHRWIPQGSTARFSTASAPSSSSGSGSTGAKSQPESPRPSMDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPGDDRFIA 237 MPAVSSRVRGFFTLLAAFQLLGMRAFVFRSQVSTKLVSRCTRHRWIPQGSTARFSTASAPSSSSGSGSTGAKSQPESPRPSMDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPGDDRFIA Sbjct: 1 MPAVSSRVRGFFTLLAAFQLLGMRAFVFRSQVSTKLVSRCTRHRWIPQGSTARFSTASAPSSSSGSGSTGAKSQPESPRPSMDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPGDDRFIA 237
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|553180099|ref|XP_005853346.1| (hypothetical protein NGA_0723100 [Nannochloropsis gaditana CCMP526] >gi|422295718|gb|EKU23017.1| hypothetical protein NGA_0723100 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 314.694 bits (805), Expect = 3.328e-107 Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0 Query: 82 MDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPGDDRFIA 237 MDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELG ALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPGDDRFIA Sbjct: 1 MDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGRALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPGDDRFIA 156
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|1129184491|gb|OLP91065.1| (DCC family protein, chloroplastic [Symbiodinium microadriaticum]) HSP 1 Score: 125.946 bits (315), Expect = 2.510e-32 Identity = 70/158 (44.30%), Postives = 100/158 (63.29%), Query Frame = 0 Query: 81 SMDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVN-RKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPG-DDRFI 236 S D A+ F ++F D RP+VL+DGVC CN +D L D + R++R + LQSE+G L+ CGR +DLSSMLVV+ D S+SDA + + + +L G L +AA+ L+P+ +RDGAY+ VA+NRY +LG+R E RL G +DRF+ Sbjct: 42 STDGAKVAFKELFY-----DDDRPIVLYDGVCNMCNSAVDVALQKDPDGRRLRFSALQSEVGRQLLVFCGRRAEDLSSMLVVKPDGECLSQSDAVVFVGQQLEGSSVLQG-LSKAAQALVPKPLRDGAYNVVAKNRYRVLGRRTELRLKQDGMEDRFV 193
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|168022583|ref|XP_001763819.1| (predicted protein [Physcomitrella patens] >gi|162685063|gb|EDQ71461.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 117.857 bits (294), Expect = 1.318e-29 Identity = 66/137 (48.18%), Postives = 89/137 (64.96%), Query Frame = 0 Query: 101 DLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPG-DDRFI 236 D RP+VLFDGVC FCN G++ +L D ++R+A LQSE G AL+ GR DDLSS++++E D+S + KS+ +R A+ G+L LL P RD YD VA NRYSILGKR++CR+ DP +DRF+ Sbjct: 32 DSRPIVLFDGVCNFCNAGVNFVLDNDPEGRVRMAALQSEAGRALLLRAGRLSDDLSSLVLIEKDRS-YIKSEGVLRTAQYLGNLLPPVGSLG----LLFPLFFRDFVYDNVANNRYSILGKRDQCRVSDPRFNDRFV 163
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|255079090|ref|XP_002503125.1| (predicted protein, partial [Micromonas commoda] >gi|226518391|gb|ACO64383.1| predicted protein, partial [Micromonas commoda]) HSP 1 Score: 115.161 bits (287), Expect = 8.094e-29 Identity = 63/135 (46.67%), Postives = 86/135 (63.70%), Query Frame = 0 Query: 95 VNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPL--LGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRL 227 V+ D RPV+LFDGVC CN G++ L +D K+R A LQS G AL+ GRDPDD+SS+++VE D + F KSDA +RIA + +PL G L ++P +RD YD +A+NRY +LG ++ECRL Sbjct: 13 VDYFATDKRPVILFDGVCNLCNGGVNFALDMDPPGKLRFAALQSTAGRALLRRAGRDPDDISSIVLVEEDAA-FVKSDAVLRIATYFSANPLFPFAGTLGP----VVPTFIRDAFYDAIADNRYDLLGMKDECRL 142
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|145352983|ref|XP_001420812.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144581047|gb|ABO99105.1| predicted protein [Ostreococcus lucimarinus CCE9901]) HSP 1 Score: 112.849 bits (281), Expect = 1.769e-27 Identity = 64/142 (45.07%), Postives = 88/142 (61.97%), Query Frame = 0 Query: 100 ADLRPVVLFDGVCMFCNRGIDTLLALDVNR---KIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRL-PDPGDDRFIA 237 +D R +VL+DGVC CN ++ L D +R +R A LQS +G AL+ GRD DD+SS++ VEA + ++KS+A +RI P G A R A +P+ + D YD VA+NRYSILG+R+ECR D DDRF+A Sbjct: 45 SDDRGIVLYDGVCNLCNGAVNFALRHDRDRARGSVRFAALQSSVGRALLVEAGRDADDISSIVYVEASGTAYAKSEAILRIGRDLLGAPFGGAA--RVAMWAVPRVVGDWVYDRVADNRYSILGRRDECRFGDDEDDDRFLA 184
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|545356487|ref|XP_005643949.1| (DUF393-domain-containing protein [Coccomyxa subellipsoidea C-169] >gi|384245913|gb|EIE19405.1| DUF393-domain-containing protein [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 112.464 bits (280), Expect = 3.302e-27 Identity = 70/190 (36.84%), Postives = 104/190 (54.74%), Query Frame = 0 Query: 55 STASAPSSSSGSGSTGAKSQPESPRP------SMDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAE-VAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPG-DDRFI 236 S+ S PS S G +SQ RP ++ +T D RP++LFDGVC C+ G+D L D +R A LQS+ G L+ CGR PDD+SS+++VE + + + KS+A +RIA+ ++AP+P L L LP RD YD +A++RY+I GK++ C+L + DRF+ Sbjct: 5 SSFSRPSGSVHCGPGSCRSQFTQKRPVLATRKTLSCTNRTAASSSASAPFATDKRPIILFDGVCNLCHGGVDFALKNDSKANLRFAALQSDTGKRLLQRCGRRPDDISSIVLVEQN-ACYIKSEAILRIAKRLSAPYPALAQVL-----FPLPGFFRDLVYDRIADSRYNIFGKKDMCQLTNEDYADRFV 188
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|567869263|ref|XP_006427253.1| (hypothetical protein CICLE_v10026597mg [Citrus clementina] >gi|557529243|gb|ESR40493.1| hypothetical protein CICLE_v10026597mg [Citrus clementina]) HSP 1 Score: 112.079 bits (279), Expect = 3.308e-27 Identity = 69/185 (37.30%), Postives = 99/185 (53.51%), Query Frame = 0 Query: 46 IPQGSTARFSTASAPSSSSGSGSTGAKSQPESPRPSMDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAE-VAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPD 229 +P G AR + + S + S P+ R +D + F D RP++L+DGVC CN G+ + D NR+IR LQSE G L+ GR PDD+SS+++VE D+S + KSDA ++I E + P P L L+ +PQ +RD AYD +A NRY+I G+ + C L D Sbjct: 5 VPGGGCARLAISHPAQVSRRTAVVATLSPPK--RDKVDYWVDATSSFFE-----PDSRPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRS-YIKSDAVLKIMEYIDLPFPQLAFFLQ-----FVPQFVRDFAYDNIANNRYNIFGRSDSCELYD 176
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|397565651|gb|EJK44712.1| (hypothetical protein THAOC_36727, partial [Thalassiosira oceanica]) HSP 1 Score: 113.62 bits (283), Expect = 4.281e-27 Identity = 64/139 (46.04%), Postives = 89/139 (64.03%), Query Frame = 0 Query: 101 DLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLG-GALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPG--DDRFI 236 D RPV+LFDGVC CN ++ L D K+R + LQS++G +L+ GR DD+SS+++V D + ++KSDA + I+E P P + L R A L+PQ +RD YD VA+NRYSI+G R+ECR G DDRF+ Sbjct: 103 DDRPVILFDGVCNLCNNAVNLALDWDPKGKLRFSALQSDVGRSLLQAHGRAADDISSIVLVRTDGA-YTKSDAILGISEELNPLPFVPMKPLSRLASGLVPQFLRDLIYDGVADNRYSIMGIRDECRFDADGEFDDRFV 240
BLAST of EWM24881.1 vs. NCBI_GenBank
Match: gi|388507778|gb|AFK41955.1| (unknown [Lotus japonicus]) HSP 1 Score: 111.694 bits (278), Expect = 4.658e-27 Identity = 69/183 (37.70%), Postives = 98/183 (53.55%), Query Frame = 0 Query: 47 PQGSTARFS-TASAPSSSSGSGSTGAKSQPESPRPSMDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAE-VAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRL 227 P + RFS T S+ + + SQ S + EA +F D RP++LFDGVC CN G+ + D N+ IR PLQSE G L+ GR PDD+SS+++VE D+S + KS+A ++I E + P P L ++ +P +RD AYD VA NRY+I G+ E C + Sbjct: 7 PSAAVGRFSSTVSSLRPRKLNNTFATLSQTRSEEANWVEATSSF--------FDQDKRPIMLFDGVCNLCNGGVKFVRDNDRNKTIRYEPLQSEAGKMLLRRSGRAPDDISSVVLVENDRS-YIKSEAVLKIMEYIDFPFPQLAFLVQ-----FVPLFIRDFAYDNVANNRYTIFGRSESCEI 175 The following BLAST results are available for this feature:
BLAST of EWM24881.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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