rna58, rna58 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna58
Unique Name	rna58
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	897
Alignment location	CM002455.1:169587..171970 +

Link to JBrowse

Properties


Property Name	Value
Product	poly binding protein 8
Orig transcript id	gnl\|cribi\|Naga_100129g1.1884.mrna
Orig protein id	gnl\|cribi\|Naga_100129g1.1884
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:169587..171970 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100129g1	gene57	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna58	rna58-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30606.1	cds58	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:169587..171970+
coding sequence from alignment at CM002455.1:169587..171970+

mRNA sequence

>rna58 ID=rna58|Name=rna58|organism=Nannochloropsis gaditana|type=mRNA|length=897bp
ATGGACGCAGCTACTGCCAACGCAAACACTGGAATGAACGGCGGCGCTAA
CATGCCTGCCCAAGGTGCAGCGACTGGAACTGGGGCTGGTTCTGGTGCTC
CTATGTACGGGAATGTACGCTCTGCTTCTCTCTATGTGGGTGACTTGGCC
CCCTCCACTACGGAATCGCAGCTTTTCGAGGCCTTTTCGCAGATTGGAAA
GATTCAATCGATTCGTATCCTTCGTGACGCCATCACGCGTCAGTCCCTCG
GGTACGCCTACGTGAACTACTACGATACCATGGACGCAGAGCGGGCCATC
GACGTGTTGAATTTCCAACCCATCAACGGGCGTCCCTGCCGGGTCATGTG
GGTGCAACGAGACCCCTACCTTCGTAAGACTGGCGTGGGGAACATCGTCA
TCAAGAACCTCCACCCCACCATCGACAACAAGACGCTTTTCGACACCTTT
TCTGTCTTTGGGAACATCTTGTCCTGTAAGGTGGTGACGGACGAACACGG
ACAGTCCCGGGGCTTCGGCTTTGTCCATTTTGACTCGGAGGCGTCTGCGC
AAGGCTGCATCGCCGATGTGAACGGGAAGATCATCGGGGGTCAAGAGGTG
GTGGTGGAGCCCTTTAAGCGGGGACACAAGGTGGAGGCCTTGTGGACGAA
CTTGTACGTGAAGAACGTGCCCCTGGATTGGGATGACGCCCGGTTTAAGT
CGGAGTTTGAAAAGTACGGTGAGATCACCTCTGCGGTCCTGCGCAAGGTG
GACGAGTCGGAGAGGGAGAGGAGGAGAAGGAGAAGAAGAAGGAGGAGGAG
TCGAAACCAGCCGTGCTCCCAGGCACCAAGAACCGGGGTTTTGGCTTCGT
CAACTTCGTCGAGCACGAGGCAGCGAAGAAGGCGATGGAGGAGATGA

protein sequence of rna58

>rna58-protein ID=rna58-protein|Name=rna58|organism=Nannochloropsis gaditana|type=polypeptide|length=305bp
MQNTGASKGFGFVCYSTPEEASAAIQKMNNKMFVGKPVYVALSQVASQRR
EMLAVSFQQQQQQRGMIPPMQNAPFYPPPAGMGMQQPPYLSMGPYGQPMR
GPGGMLPQRGMPLNPGMMRPMYRMPDYRRQDMGGMEGGPGGLMGGRPGGP
GGPKQAYNQRHQGQQQGGGIRGRQQGRMVQAGPGGMMGGGMPQHMQAPMG
GPAEGGYQHGQEGVQGGAPQGGAIDPTRLASASLEEQKTILGEQLYPLIV
RREPELAGKITGMILELDNTEILHLLESPESLDEKVQEAIKVLQEFNTHV
KDGSE

mRNA from alignment at CM002455.1:169587..171970+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna58 ID=rna58|Name=rna58|organism=Nannochloropsis gaditana|type=mRNA|length=2384bp|location=Sequence derived from alignment at CM002455.1:169587..171970+ (Nannochloropsis gaditana)
ATGCAAGTGACCAGACCAAGTCATCCTTCTctccacttcccctccctccc
tccctccctccctctctccctccctcagaaCACGGGCGCCTCGAAAGGCT
TCGGATTTGTCTGCTACTCCACGCCCGAAGAAGCCTCGGCCGCCATCCAG
AAGATGAACAACAAGATGTTCGTGGGGAAACCCGTCTACGTGGCGCTCTC
CCAAGTCGCGTCCCAACGCCGGGAAATGCTGGCCGTCTCCTtccaacaac
aacaacaacaacggGGTATGATCCCCCCCATGCAGAACGCCCCCTTTTAC
CCACCACCGGCAGGGATGGGGATGCAGCAGCCCCCGTACCTGTCGATGGG
CCCATACGGACAGCCCATGCgcgggccgggaggaatGTTGCCACAACGAG
GGATGCCGTTGAATCCGGGTAAGAGCACTGCGCGGGGCTTGGAGTGGGGC
ACAGGGATGGTCTTGGGGATAAGACGGGGGGTTCCGGGGGGGAATGTAGG
GGAAAGGCTTAGGGGAAAGGATTgccggggggaaaaggacctGTCAGGGT
TAGGGTGAGGGCGAATGTGGACGGGCGATCCCATAGTTGCTGTGTAGTGC
TGCCCTCGGTCGGGCTAAGAATCGGGTTGGGGTTAGGGTAAAGGcctccg
tcttcttctccctctgctcccgCGGGACGGGGTCCCCTGTCCTTGTGCCC
TTGGGCTGGTCTGGGGATAGCACGGGTGGGGAACTGGGATCAGAGAAAGA
CTCGCACGACCAGTTTTCCTTGATGACGGCGTCGTCCGACCTAGGCACCC
GATGGCCGCCCgtttcacctccctccctctttcccccctctcggtCTCAT
TCTCTCCTGTAGGCATGATGCGGCCCATGTACCGCATGCCTGACTACCGG
CGCCAAGACatggggggaatggagggcggTCCGGGCGGGCTGATGGGCGG
CCGACcgggaggaccaggggggCCGAAACAGGCCTACAATCAGCGGCACC
AAGGACAgcaacagggaggaggtatcCGTGGGCGGCAGCAGGGTCGGATG
GTGCAGGCCGGACCTGGGGGGATGATGGGTGGGGGCATGCCGCAGCACAT
GCAGGCGCCGATGGGGGgtccggcggagggagggtaccAGCACGGGCAGG
AAGGCGTGCAAGGGGGAGCCCCGCAAGGAGGGGCGATCGACCCCACGCGT
CTGGCATCGGCCTCgttggaggagcagaagacGATTTTGGGAGAACAGTT
GTACCCTCTGATTGTGCGACGGGAGCCTGAGTTGGCCGGGAAAATCACGG
GGATGATTTTGGAGCTGGACAATACGGTAGGTCCAGGTCTATATCATACC
CGACCCTTTTGAATTTTGACATGGTCGTTTCTTTACTCAGCTTGTTGGAA
AACGCGACGCTTCTGACCGGTGGGGCGCAATTGTCCGCAACGAGTTTGGG
ACGATCCCGATGAGTCGCCCGGGcgttcccgtccctcctcgctgccctcc
tttttctctgACGCACACCGCTTCTTCCCATATTTTAGGAAATCCTTCAT
TTGCTCGAATCTCCGGAGTCTTTGGACGAAAAAGTGCAGGAGGCGATCAA
GGTGCTCCAAGAATTCAACACGCACGTCAAGGACGGCTCGGAGTAACGGG
GGTGGACCGAGGCATGTGGAAAGGTCCttgtggtggagggaaatCTGCAC
TGGGGAGATGCGGCAGGTTTTGTGTATGCGACTTGTCGCGGTGTTGTGGC
AGACTgcgaggacaagggaggttGGTAAGGGACGGTGGATGGAAGACTCG
AGGGCGGTATGATTGTGTGACTGGACACACTCGTTTAAATGCTGGGGGGC
CCTGGAAGGCATCTGGACGTTAGAGACGTCTAGCGGATACTCACGGAGAA
GGGTTACGGTTGCAGTATCACCCATTCTGCTTTTCATTTCATCCGAAGAT
GTTATGTGCGCGATAGTTGTCTCTGTGTTGGAAACACCTCATGACGGAGG
TGTTGTTGGATGAAAGCAGTGGGATCTTAGAGACAATTTTAGTCTCGTGG
AAGGGTCGTTTGCCGAATCAACTGCCTTCCATAGCCGGAGATGAGGCAGC
TCGAACAagtgtgggagagggacgtTGTGGTGGACGGGGCGCACTGGCTT
ACCCCCATATTCATATAGGCCACCTCGTTTGCGACTTTTACTATATAGCA
AGGATAAGAATTAGAGAGAACAGAAATGCCGAGAGCCTGGGTGAGGGGTG
ACTTGGGGCTATGAAGTCAAACGGAGTTTTTCATTTTAAATCCACGACAC
CGAGCTAGACTCAGAAGAGCATGAATGAGGCAGCTGCCGAAAAACGAgaa
caaaaaggaaaaaaatgcaatATTTCTTCTTGCG

Coding sequence (CDS) from alignment at CM002455.1:169587..171970+

>rna58 ID=rna58|Name=rna58|organism=Nannochloropsis gaditana|type=CDS|length=3672bp|location=Sequence derived from alignment at CM002455.1:169587..171970+ (Nannochloropsis gaditana)
ATGCAAaaCACGGGCGCCTCGAAAGGCTTCGGATTTGTCTGCTACTCCAC
GCCCGAAGAAGCCTCGGCCGCCATCCAGAAGATGAACAACAAGATGTTCG
TGGGGAAACCCGTCTACGTGGCGCTCTCCCAAGTCGCGTCCCAACGCCGG
GAAATGCTGGCCGTCTCCTtccaacaacaacaacaacaacggGGTATGAT
CCCCCCCATGCAGAACGCCCCCTTTTACCCACCACCGGCAGGGATGGGGA
TGCAGCAGCCCCCGTACCTGTCGATGGGCCCATACGGACAGCCCATGCgc
gggccgggaggaatGTTGCCACAACGAGGGATGCCGTTGAATCCGGGCAT
GATGCGGCCCATGTACCGCATGCCTGACTACCGGCGCCAAGACatggggg
gaatggagggcggTCCGGGCGGGCTGATGGGCGGCCGACcgggaggacca
ggggggCCGAAACAGGCCTACAATCAGCGGCACCAAGGACAgcaacaggg
aggaggtatcCGTGGGCGGCAGCAGGGTCGGATGGTGCAGGCCGGACCTG
GGGGGATGATGGGTGGGGGCATGCCGCAGCACATGCAGGCGCCGATGGGG
GgtccggcggagggagggtaccAGCACGGGCAGGAAGGCGTGCAAGGGGG
AGCCCCGCAAGGAGGGGCGATCGACCCCACGCGTCTGGCATCGGCCTCgt
tggaggagcagaagacGATTTTGGGAGAACAGTTGTACCCTCTGATTGTG
CGACGGGAGCCTGAGTTGGCCGGGAAAATCACGGGGATGATTTTGGAGCT
GGACAATACGGAAATCCTTCATTTGCTCGAATCTCCGGAGTCTTTGGACG
AAAAAGTGCAGGAGGCGATCAAGGTGCTCCAAGAATTCAACACGCACGTC
AAGGACGGCTCGGAGTAAATGCAAaaCACGGGCGCCTCGAAAGGCTTCGG
ATTTGTCTGCTACTCCACGCCCGAAGAAGCCTCGGCCGCCATCCAGAAGA
TGAACAACAAGATGTTCGTGGGGAAACCCGTCTACGTGGCGCTCTCCCAA
GTCGCGTCCCAACGCCGGGAAATGCTGGCCGTCTCCTtccaacaacaaca
acaacaacggGGTATGATCCCCCCCATGCAGAACGCCCCCTTTTACCCAC
CACCGGCAGGGATGGGGATGCAGCAGCCCCCGTACCTGTCGATGGGCCCA
TACGGACAGCCCATGCgcgggccgggaggaatGTTGCCACAACGAGGGAT
GCCGTTGAATCCGGGCATGATGCGGCCCATGTACCGCATGCCTGACTACC
GGCGCCAAGACatggggggaatggagggcggTCCGGGCGGGCTGATGGGC
GGCCGACcgggaggaccaggggggCCGAAACAGGCCTACAATCAGCGGCA
CCAAGGACAgcaacagggaggaggtatcCGTGGGCGGCAGCAGGGTCGGA
TGGTGCAGGCCGGACCTGGGGGGATGATGGGTGGGGGCATGCCGCAGCAC
ATGCAGGCGCCGATGGGGGgtccggcggagggagggtaccAGCACGGGCA
GGAAGGCGTGCAAGGGGGAGCCCCGCAAGGAGGGGCGATCGACCCCACGC
GTCTGGCATCGGCCTCgttggaggagcagaagacGATTTTGGGAGAACAG
TTGTACCCTCTGATTGTGCGACGGGAGCCTGAGTTGGCCGGGAAAATCAC
GGGGATGATTTTGGAGCTGGACAATACGGAAATCCTTCATTTGCTCGAAT
CTCCGGAGTCTTTGGACGAAAAAGTGCAGGAGGCGATCAAGGTGCTCCAA
GAATTCAACACGCACGTCAAGGACGGCTCGGAGTAAATGCAAaaCACGGG
CGCCTCGAAAGGCTTCGGATTTGTCTGCTACTCCACGCCCGAAGAAGCCT
CGGCCGCCATCCAGAAGATGAACAACAAGATGTTCGTGGGGAAACCCGTC
TACGTGGCGCTCTCCCAAGTCGCGTCCCAACGCCGGGAAATGCTGGCCGT
CTCCTtccaacaacaacaacaacaacggGGTATGATCCCCCCCATGCAGA
ACGCCCCCTTTTACCCACCACCGGCAGGGATGGGGATGCAGCAGCCCCCG
TACCTGTCGATGGGCCCATACGGACAGCCCATGCgcgggccgggaggaat
GTTGCCACAACGAGGGATGCCGTTGAATCCGGGCATGATGCGGCCCATGT
ACCGCATGCCTGACTACCGGCGCCAAGACatggggggaatggagggcggT
CCGGGCGGGCTGATGGGCGGCCGACcgggaggaccaggggggCCGAAACA
GGCCTACAATCAGCGGCACCAAGGACAgcaacagggaggaggtatcCGTG
GGCGGCAGCAGGGTCGGATGGTGCAGGCCGGACCTGGGGGGATGATGGGT
GGGGGCATGCCGCAGCACATGCAGGCGCCGATGGGGGgtccggcggaggg
agggtaccAGCACGGGCAGGAAGGCGTGCAAGGGGGAGCCCCGCAAGGAG
GGGCGATCGACCCCACGCGTCTGGCATCGGCCTCgttggaggagcagaag
acGATTTTGGGAGAACAGTTGTACCCTCTGATTGTGCGACGGGAGCCTGA
GTTGGCCGGGAAAATCACGGGGATGATTTTGGAGCTGGACAATACGGAAA
TCCTTCATTTGCTCGAATCTCCGGAGTCTTTGGACGAAAAAGTGCAGGAG
GCGATCAAGGTGCTCCAAGAATTCAACACGCACGTCAAGGACGGCTCGGA
GTAAATGCAAaaCACGGGCGCCTCGAAAGGCTTCGGATTTGTCTGCTACT
CCACGCCCGAAGAAGCCTCGGCCGCCATCCAGAAGATGAACAACAAGATG
TTCGTGGGGAAACCCGTCTACGTGGCGCTCTCCCAAGTCGCGTCCCAACG
CCGGGAAATGCTGGCCGTCTCCTtccaacaacaacaacaacaacggGGTA
TGATCCCCCCCATGCAGAACGCCCCCTTTTACCCACCACCGGCAGGGATG
GGGATGCAGCAGCCCCCGTACCTGTCGATGGGCCCATACGGACAGCCCAT
GCgcgggccgggaggaatGTTGCCACAACGAGGGATGCCGTTGAATCCGG
GCATGATGCGGCCCATGTACCGCATGCCTGACTACCGGCGCCAAGACatg
gggggaatggagggcggTCCGGGCGGGCTGATGGGCGGCCGACcgggagg
accaggggggCCGAAACAGGCCTACAATCAGCGGCACCAAGGACAgcaac
agggaggaggtatcCGTGGGCGGCAGCAGGGTCGGATGGTGCAGGCCGGA
CCTGGGGGGATGATGGGTGGGGGCATGCCGCAGCACATGCAGGCGCCGAT
GGGGGgtccggcggagggagggtaccAGCACGGGCAGGAAGGCGTGCAAG
GGGGAGCCCCGCAAGGAGGGGCGATCGACCCCACGCGTCTGGCATCGGCC
TCgttggaggagcagaagacGATTTTGGGAGAACAGTTGTACCCTCTGAT
TGTGCGACGGGAGCCTGAGTTGGCCGGGAAAATCACGGGGATGATTTTGG
AGCTGGACAATACGGAAATCCTTCATTTGCTCGAATCTCCGGAGTCTTTG
GACGAAAAAGTGCAGGAGGCGATCAAGGTGCTCCAAGAATTCAACACGCA
CGTCAAGGACGGCTCGGAGTAA

Synonyms

Publications