EWM30606.1, cds58 (CDS) Nannochloropsis gaditana

Overview
NameEWM30606.1
Unique Namecds58
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:169587..169592 +
Alignment locationCM002455.1:169665..170004 +
Alignment locationCM002455.1:170449..170912 +
Alignment locationCM002455.1:171125..171232 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30606.1
Productpoly binding protein 8
Orig transcript idgnl|cribi|Naga_100129g1.1884.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:169587..169592 +
CM002455.1supercontigCM002455.1:169665..170004 +
CM002455.1supercontigCM002455.1:170449..170912 +
CM002455.1supercontigCM002455.1:171125..171232 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait
IPR002004PABP_HYD
Homology
BLAST of EWM30606.1 vs. NCBI_GenBank
Match: gi|585113278|gb|EWM30606.1| (poly binding protein 8 [Nannochloropsis gaditana])

HSP 1 Score: 596.66 bits (1537), Expect = 0.000e+0
Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 0
Query:    1 MQNTGASKGFGFVCYSTPEEASAAIQKMNNKMFVGKPVYVALSQVASQRREMLAVSFQQQQQQRGMIPPMQNAPFYPPPAGMGMQQPPYLSMGPYGQPMRGPGGMLPQRGMPLNPGMMRPMYRMPDYRRQDMGGMEGGPGGLMGGRPGGPGGPKQAYNQRHQGQQQGGGIRGRQQGRMVQAGPGGMMGGGMPQHMQAPMGGPAEGGYQHGQEGVQGGAPQGGAIDPTRLASASLEEQKTILGEQLYPLIVRREPELAGKITGMILELDNTEILHLLESPESLDEKVQEAIKVLQEFNTHVKDGSE 305
            MQNTGASKGFGFVCYSTPEEASAAIQKMNNKMFVGKPVYVALSQVASQRREMLAVSFQQQQQQRGMIPPMQNAPFYPPPAGMGMQQPPYLSMGPYGQPMRGPGGMLPQRGMPLNPGMMRPMYRMPDYRRQDMGGMEGGPGGLMGGRPGGPGGPKQAYNQRHQGQQQGGGIRGRQQGRMVQAGPGGMMGGGMPQHMQAPMGGPAEGGYQHGQEGVQGGAPQGGAIDPTRLASASLEEQKTILGEQLYPLIVRREPELAGKITGMILELDNTEILHLLESPESLDEKVQEAIKVLQEFNTHVKDGSE
Sbjct:    1 MQNTGASKGFGFVCYSTPEEASAAIQKMNNKMFVGKPVYVALSQVASQRREMLAVSFQQQQQQRGMIPPMQNAPFYPPPAGMGMQQPPYLSMGPYGQPMRGPGGMLPQRGMPLNPGMMRPMYRMPDYRRQDMGGMEGGPGGLMGGRPGGPGGPKQAYNQRHQGQQQGGGIRGRQQGRMVQAGPGGMMGGGMPQHMQAPMGGPAEGGYQHGQEGVQGGAPQGGAIDPTRLASASLEEQKTILGEQLYPLIVRREPELAGKITGMILELDNTEILHLLESPESLDEKVQEAIKVLQEFNTHVKDGSE 305          
BLAST of EWM30606.1 vs. NCBI_GenBank
Match: gi|58271356|ref|XP_572834.1| (polyadenylate-binding protein [Cryptococcus neoformans var. neoformans JEC21] >gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var. neoformans B-3501A] >gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and nuclear; Short=PABP; Short=Poly(A)-binding protein; AltName: Full=Polyadenylate tail-binding protein >gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and nuclear; Short=PABP; Short=Poly(A)-binding protein; AltName: Full=Polyadenylate tail-binding protein >gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var. neoformans B-3501A] >gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans var. neoformans JEC21])

HSP 1 Score: 150.984 bits (380), Expect = 1.733e-37
Identity = 132/319 (41.38%), Postives = 164/319 (51.41%), Query Frame = 0
Query:    2 QNTGASKGFGFVCYSTPEEASAAIQKMNNKMFVGKPVYVALSQVASQRREMLAVSFQQQQQQRGMIPPMQNAPFYPPPAGMGMQQPPYLSMGPYGQPMRGPGGMLPQRGMPLNPGMMRPMYRMPDYRRQDMGGMEGGPGGLMGGRPGG-------PGGPKQAYNQRHQGQQQGG-GIRGRQQGRMVQAGPG--GMMGGGMPQHMQAPMGGPA----EGGYQHGQEGVQGG-APQGGAIDPTRLASASLEEQKTILGEQLYPLIVRREPELAGKITGMILELDNTEILHLLESPESLDEKVQEAIKVLQEFNTHVKDGSE 305
             ++G S+GFGFVCYS+P+EA+ A+ +MN KM   KP+YVAL+Q    RR+ L     Q+ QQR     MQ    +P     GMQ       G  GQPM G          P  PG  +PM  MP  R   M G  G P  +M  RP         PGG   AY    Q    G  G   R  G  + A P   G   GG P  + AP G PA     GG    +   Q   APQ G +D   LA A+  EQK +LGE LYPLI   +PELAGKITGM+LE+DN E+LHL+ES  +L EKV EA++VL E+    K  ++
Sbjct:  364 DDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQR-----MQYGAGFP-----GMQ-------GYMGQPMYG---------YPPMPGYGQPMPGMPPVR-GPMMGYPGAPQNMMQSRPRFNPNGQPLPGG-VPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNANGPRNGG-PSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVLAEWGKDEKPAAD 653          
BLAST of EWM30606.1 vs. NCBI_GenBank
Match: gi|1214829532|gb|OWZ64212.1| (polyadenylate-binding protein, cytoplasmic and nuclear [Cryptococcus neoformans var. grubii])

HSP 1 Score: 150.984 bits (380), Expect = 1.738e-37
Identity = 133/319 (41.69%), Postives = 164/319 (51.41%), Query Frame = 0
Query:    2 QNTGASKGFGFVCYSTPEEASAAIQKMNNKMFVGKPVYVALSQVASQRREMLAVSFQQQQQQRGMIPPMQNAPFYPPPAGMGMQQPPYLSMGPYGQPMRGPGGMLPQRGMPLNPGMMRPMYRMPDYRRQDMGGMEGGPGGLMGGRPGG-------PGGPKQAYNQRHQGQQQGG-GIRGRQQGRMVQAGPG--GMMGGGMPQHMQAPMGGPA----EGGYQHGQEGVQGG-APQGGAIDPTRLASASLEEQKTILGEQLYPLIVRREPELAGKITGMILELDNTEILHLLESPESLDEKVQEAIKVLQEFNTHVKDGSE 305
             ++G S+GFGFVCYS+P+EA+ A+ +MN KM   KP+YVAL+Q    RR+ L     Q+ QQR     MQ    +P     GMQ       G  GQPM G          P  PG  +PM  MP  R   M G  G P  +M  RP         PGG   AY    Q    G  G   R  G  + A P   G   GG P  + AP G PA     GG    +   Q   APQ G +D   LA A+  EQK +LGE LYPLI   +PELAGKITGM+LE+DN E+LHL+ES  +L EKV EA++VL E+    K  +E
Sbjct:  366 DDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQR-----MQYGTGFP-----GMQ-------GYMGQPMYG---------YPPMPGYGQPMPGMPPVR-GPMMGYPGAPQNMMQSRPRFNPNGQPLPGG-VPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNANGPRNGG-PSPVGAPQGLPAGSMPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVLAEWGKDEKPAAE 655          
BLAST of EWM30606.1 vs. NCBI_GenBank
Match: gi|1214804298|gb|OWZ40817.1| (polyadenylate-binding protein, cytoplasmic and nuclear [Cryptococcus neoformans var. grubii C23])

HSP 1 Score: 150.214 bits (378), Expect = 3.333e-37
Identity = 131/310 (42.26%), Postives = 161/310 (51.94%), Query Frame = 0
Query:    2 QNTGASKGFGFVCYSTPEEASAAIQKMNNKMFVGKPVYVALSQVASQRREMLAVSFQQQQQQRGMIPPMQNAPFYPPPAGMGMQQPPYLSMGPYGQPMRGPGGMLPQRGMPLNPGMMRPMYRMPDYRRQDMGGMEGGPGGLMGGRPGG-------PGGPKQAYNQRHQGQQQGG-GIRGRQQGRMVQAGPG--GMMGGGMPQHMQAPMGGPA----EGGYQHGQEGVQGG-APQGGAIDPTRLASASLEEQKTILGEQLYPLIVRREPELAGKITGMILELDNTEILHLLESPESLDEKVQEAIKVLQEF 296
             ++G S+GFGFVCYS+P+EA+ A+ +MN KM   KP+YVAL+Q    RR+ L     Q+ QQR     MQ    +P     GMQ       G  GQPM G          P  PG  +PM  MP  R   M G  G P  +M  RP         PGG   AY    Q    G  G   R  G  + A P   G   GG P  + AP G PA     GG    +   Q   APQ G +D   LA A+  EQK +LGE LYPLI   +PELAGKITGM+LE+DN E+LHL+ES  +L EKV EA++VL E+
Sbjct:  366 DDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQR-----MQYGTGFP-----GMQ-------GYMGQPMYG---------YPPMPGYGQPMPGMPPVR-GPMMGYPGAPQNMMQSRPRFNPNGQPLPGG-VPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNANGPRNGG-PSPVGAPQGLPAGSMPRGGQMPARPHEQAAPAPQAGRLDAESLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVLAEW 646          
BLAST of EWM30606.1 vs. NCBI_GenBank
Match: gi|686625147|gb|KGB76783.1| (polyadenylate-binding protein, cytoplasmic and nuclear [Cryptococcus gattii VGII R265] >gi|757320332|gb|KIR26428.1| polyadenylate-binding protein, cytoplasmic and nuclear [Cryptococcus gattii VGII LA55] >gi|757328213|gb|KIR34264.1| polyadenylate-binding protein, cytoplasmic and nuclear [Cryptococcus gattii VGII MMRL2647] >gi|757335323|gb|KIR41349.1| polyadenylate-binding protein, cytoplasmic and nuclear [Cryptococcus gattii VGII Ram5] >gi|757364095|gb|KIR69906.1| polyadenylate-binding protein, cytoplasmic and nuclear [Cryptococcus gattii VGII CA1014] >gi|757384575|gb|KIR89909.1| polyadenylate-binding protein, cytoplasmic and nuclear [Cryptococcus gattii VGII CBS 10090] >gi|757393335|gb|KIR98636.1| polyadenylate-binding protein, cytoplasmic and nuclear [Cryptococcus gattii VGII 2001/935-1] >gi|761935521|gb|KIY56319.1| polyadenylate-binding protein, cytoplasmic and nuclear [Cryptococcus gattii VGII 99/473])

HSP 1 Score: 149.828 bits (377), Expect = 3.400e-37
Identity = 131/310 (42.26%), Postives = 161/310 (51.94%), Query Frame = 0
Query:    2 QNTGASKGFGFVCYSTPEEASAAIQKMNNKMFVGKPVYVALSQVASQRREMLAVSFQQQQQQRGMIPPMQNAPFYPPPAGMGMQQPPYLSMGPYGQPMRGPGGMLPQRGMPLNPGMMRPMYRMPDYRRQDMGGMEGGPGGLMGGRPGG-------PGGPKQAYNQRHQGQQQGG-GIRGRQQGRMVQAGPG--GMMGGGMPQHMQAPMGGPA----EGGYQHGQEGVQGG-APQGGAIDPTRLASASLEEQKTILGEQLYPLIVRREPELAGKITGMILELDNTEILHLLESPESLDEKVQEAIKVLQEF 296
             ++G S+GFGFVCYS+P+EA+ A+ +MN KM   KP+YVAL+Q    RR+ L     Q+ QQR     MQ    +P     GMQ       G  GQPM G          P  PG  +PM  MP  R   M G  G P  +M  RP         PGG   AY    Q    G  G   R  G  + A P   G   GG P  + AP G PA     GG    +   Q   APQ G +D   LA A+  EQK +LGE LYPLI   +PELAGKITGM+LE+DN E+LHL+ES  +L EKV EA++VL E+
Sbjct:  361 DDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQR-----MQYGAGFP-----GMQ-------GYMGQPMYG---------YPPMPGYGQPMPGMPPVR-GPMMGYPGAPQNMMQSRPRFNPNGQPLPGG-VPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNANGPRNGG-PSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVLAEW 641          
BLAST of EWM30606.1 vs. NCBI_GenBank
Match: gi|799338974|ref|XP_012051803.1| (polyadenylate-binding protein, cytoplasmic and nuclear [Cryptococcus neoformans var. grubii H99] >gi|405122394|gb|AFR97161.1| polyadenylate-binding protein, cytoplasmic and nuclear [Cryptococcus neoformans var. grubii H99] >gi|1214791801|gb|OWZ28867.1| polyadenylate-binding protein, cytoplasmic and nuclear [Cryptococcus neoformans var. grubii AD2-60a])

HSP 1 Score: 149.828 bits (377), Expect = 3.503e-37
Identity = 131/310 (42.26%), Postives = 161/310 (51.94%), Query Frame = 0
Query:    2 QNTGASKGFGFVCYSTPEEASAAIQKMNNKMFVGKPVYVALSQVASQRREMLAVSFQQQQQQRGMIPPMQNAPFYPPPAGMGMQQPPYLSMGPYGQPMRGPGGMLPQRGMPLNPGMMRPMYRMPDYRRQDMGGMEGGPGGLMGGRPGG-------PGGPKQAYNQRHQGQQQGG-GIRGRQQGRMVQAGPG--GMMGGGMPQHMQAPMGGPA----EGGYQHGQEGVQGG-APQGGAIDPTRLASASLEEQKTILGEQLYPLIVRREPELAGKITGMILELDNTEILHLLESPESLDEKVQEAIKVLQEF 296
             ++G S+GFGFVCYS+P+EA+ A+ +MN KM   KP+YVAL+Q    RR+ L     Q+ QQR     MQ    +P     GMQ       G  GQPM G          P  PG  +PM  MP  R   M G  G P  +M  RP         PGG   AY    Q    G  G   R  G  + A P   G   GG P  + AP G PA     GG    +   Q   APQ G +D   LA A+  EQK +LGE LYPLI   +PELAGKITGM+LE+DN E+LHL+ES  +L EKV EA++VL E+
Sbjct:  366 DDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQR-----MQYGTGFP-----GMQ-------GYMGQPMYG---------YPPMPGYGQPMPGMPPVR-GPMMGYPGAPQNMMQSRPRFNPNGQPLPGG-VPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNANGPRNGG-PSPVGAPQGLPAGSMPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVLAEW 646          
BLAST of EWM30606.1 vs. NCBI_GenBank
Match: gi|1214798398|gb|OWZ35169.1| (polyadenylate-binding protein, cytoplasmic and nuclear [Cryptococcus neoformans var. grubii AD1-83a])

HSP 1 Score: 149.828 bits (377), Expect = 3.616e-37
Identity = 131/310 (42.26%), Postives = 161/310 (51.94%), Query Frame = 0
Query:    2 QNTGASKGFGFVCYSTPEEASAAIQKMNNKMFVGKPVYVALSQVASQRREMLAVSFQQQQQQRGMIPPMQNAPFYPPPAGMGMQQPPYLSMGPYGQPMRGPGGMLPQRGMPLNPGMMRPMYRMPDYRRQDMGGMEGGPGGLMGGRPGG-------PGGPKQAYNQRHQGQQQGG-GIRGRQQGRMVQAGPG--GMMGGGMPQHMQAPMGGPA----EGGYQHGQEGVQGG-APQGGAIDPTRLASASLEEQKTILGEQLYPLIVRREPELAGKITGMILELDNTEILHLLESPESLDEKVQEAIKVLQEF 296
             ++G S+GFGFVCYS+P+EA+ A+ +MN KM   KP+YVAL+Q    RR+ L     Q+ QQR     MQ    +P     GMQ       G  GQPM G          P  PG  +PM  MP  R   M G  G P  +M  RP         PGG   AY    Q    G  G   R  G  + A P   G   GG P  + AP G PA     GG    +   Q   APQ G +D   LA A+  EQK +LGE LYPLI   +PELAGKITGM+LE+DN E+LHL+ES  +L EKV EA++VL E+
Sbjct:  366 DDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQR-----MQYGTGFP-----GMQ-------GYMGQPMYG---------YPPMPGYGQPMPGMPPVR-GPMMGYPGAPQNMMQSRPRFNPNGQPLPGG-VPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNANGPRNGG-PSPVGAPQGLPAGSMPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVLAEW 646          
BLAST of EWM30606.1 vs. NCBI_GenBank
Match: gi|1214815637|gb|OWZ51791.1| (polyadenylate-binding protein, cytoplasmic and nuclear [Cryptococcus neoformans var. grubii 125.91])

HSP 1 Score: 149.828 bits (377), Expect = 4.032e-37
Identity = 131/310 (42.26%), Postives = 161/310 (51.94%), Query Frame = 0
Query:    2 QNTGASKGFGFVCYSTPEEASAAIQKMNNKMFVGKPVYVALSQVASQRREMLAVSFQQQQQQRGMIPPMQNAPFYPPPAGMGMQQPPYLSMGPYGQPMRGPGGMLPQRGMPLNPGMMRPMYRMPDYRRQDMGGMEGGPGGLMGGRPGG-------PGGPKQAYNQRHQGQQQGG-GIRGRQQGRMVQAGPG--GMMGGGMPQHMQAPMGGPA----EGGYQHGQEGVQGG-APQGGAIDPTRLASASLEEQKTILGEQLYPLIVRREPELAGKITGMILELDNTEILHLLESPESLDEKVQEAIKVLQEF 296
             ++G S+GFGFVCYS+P+EA+ A+ +MN KM   KP+YVAL+Q    RR+ L     Q+ QQR     MQ    +P     GMQ       G  GQPM G          P  PG  +PM  MP  R   M G  G P  +M  RP         PGG   AY    Q    G  G   R  G  + A P   G   GG P  + AP G PA     GG    +   Q   APQ G +D   LA A+  EQK +LGE LYPLI   +PELAGKITGM+LE+DN E+LHL+ES  +L EKV EA++VL E+
Sbjct:  366 DDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQR-----MQYGTGFP-----GMQ-------GYMGQPMYG---------YPPMPGYGQPMPGMPPVR-GPMMGYPGAPQNMMQSRPRFNPNGQPLPGG-VPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNANGPRNGG-PSPVGAPQGLPAGSMPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVLAEW 646          
BLAST of EWM30606.1 vs. NCBI_GenBank
Match: gi|1211151055|gb|OWT37237.1| (polyadenylate-binding protein, cytoplasmic and nuclear [Cryptococcus neoformans var. grubii Bt1])

HSP 1 Score: 149.828 bits (377), Expect = 4.032e-37
Identity = 131/310 (42.26%), Postives = 161/310 (51.94%), Query Frame = 0
Query:    2 QNTGASKGFGFVCYSTPEEASAAIQKMNNKMFVGKPVYVALSQVASQRREMLAVSFQQQQQQRGMIPPMQNAPFYPPPAGMGMQQPPYLSMGPYGQPMRGPGGMLPQRGMPLNPGMMRPMYRMPDYRRQDMGGMEGGPGGLMGGRPGG-------PGGPKQAYNQRHQGQQQGG-GIRGRQQGRMVQAGPG--GMMGGGMPQHMQAPMGGPA----EGGYQHGQEGVQGG-APQGGAIDPTRLASASLEEQKTILGEQLYPLIVRREPELAGKITGMILELDNTEILHLLESPESLDEKVQEAIKVLQEF 296
             ++G S+GFGFVCYS+P+EA+ A+ +MN KM   KP+YVAL+Q    RR+ L     Q+ QQR     MQ    +P     GMQ       G  GQPM G          P  PG  +PM  MP  R   M G  G P  +M  RP         PGG   AY    Q    G  G   R  G  + A P   G   GG P  + AP G PA     GG    +   Q   APQ G +D   LA A+  EQK +LGE LYPLI   +PELAGKITGM+LE+DN E+LHL+ES  +L EKV EA++VL E+
Sbjct:  366 DDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQR-----MQYGTGFP-----GMQ-------GYMGQPMYG---------YPPMPGYGQPMPGMPPVR-GPMMGYPGAPQNMMQSRPRFNPNGQPLPGG-VPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNANGPRNGG-PSPVGAPQGLPAGSMPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVLAEW 646          
BLAST of EWM30606.1 vs. NCBI_GenBank
Match: gi|1214830567|gb|OWZ65208.1| (polyadenylate-binding protein, cytoplasmic and nuclear [Cryptococcus neoformans var. grubii] >gi|1214842124|gb|OWZ76297.1| polyadenylate-binding protein, cytoplasmic and nuclear [Cryptococcus neoformans var. grubii Bt85])

HSP 1 Score: 149.828 bits (377), Expect = 4.057e-37
Identity = 131/310 (42.26%), Postives = 161/310 (51.94%), Query Frame = 0
Query:    2 QNTGASKGFGFVCYSTPEEASAAIQKMNNKMFVGKPVYVALSQVASQRREMLAVSFQQQQQQRGMIPPMQNAPFYPPPAGMGMQQPPYLSMGPYGQPMRGPGGMLPQRGMPLNPGMMRPMYRMPDYRRQDMGGMEGGPGGLMGGRPGG-------PGGPKQAYNQRHQGQQQGG-GIRGRQQGRMVQAGPG--GMMGGGMPQHMQAPMGGPA----EGGYQHGQEGVQGG-APQGGAIDPTRLASASLEEQKTILGEQLYPLIVRREPELAGKITGMILELDNTEILHLLESPESLDEKVQEAIKVLQEF 296
             ++G S+GFGFVCYS+P+EA+ A+ +MN KM   KP+YVAL+Q    RR+ L     Q+ QQR     MQ    +P     GMQ       G  GQPM G          P  PG  +PM  MP  R   M G  G P  +M  RP         PGG   AY    Q    G  G   R  G  + A P   G   GG P  + AP G PA     GG    +   Q   APQ G +D   LA A+  EQK +LGE LYPLI   +PELAGKITGM+LE+DN E+LHL+ES  +L EKV EA++VL E+
Sbjct:  366 DDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQR-----MQYGTGFP-----GMQ-------GYMGQPMYG---------YPPMPGYGQPMPGMPPVR-GPMMGYPGAPQNMMQSRPRFNPNGQPLPGG-VPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNANGPRNGG-PSPVGAPQGLPAGSMPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVLAEW 646          
The following BLAST results are available for this feature:
BLAST of EWM30606.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113278|gb|EWM30606.1|0.000e+0100.00poly binding protein 8 [Nannochloropsis gaditana][more]
gi|58271356|ref|XP_572834.1|1.733e-3741.38polyadenylate-binding protein [Cryptococcus neofor... [more]
gi|1214829532|gb|OWZ64212.1|1.738e-3741.69polyadenylate-binding protein, cytoplasmic and nuc... [more]
gi|1214804298|gb|OWZ40817.1|3.333e-3742.26polyadenylate-binding protein, cytoplasmic and nuc... [more]
gi|686625147|gb|KGB76783.1|3.400e-3742.26polyadenylate-binding protein, cytoplasmic and nuc... [more]
gi|799338974|ref|XP_012051803.1|3.503e-3742.26polyadenylate-binding protein, cytoplasmic and nuc... [more]
gi|1214798398|gb|OWZ35169.1|3.616e-3742.26polyadenylate-binding protein, cytoplasmic and nuc... [more]
gi|1214815637|gb|OWZ51791.1|4.032e-3742.26polyadenylate-binding protein, cytoplasmic and nuc... [more]
gi|1211151055|gb|OWT37237.1|4.032e-3742.26polyadenylate-binding protein, cytoplasmic and nuc... [more]
gi|1214830567|gb|OWZ65208.1|4.057e-3742.26polyadenylate-binding protein, cytoplasmic and nuc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna58rna58Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications