rna5796, rna5796 (mRNA) Nannochloropsis gaditana

Overview
Namerna5796
Unique Namerna5796
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length315
Alignment locationCM002466.1:862819..864946 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100116g5.9034.mrna
Orig protein idgnl|cribi|Naga_100116g5.9034
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:862819..864946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100116g5gene5598Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5796rna5796-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24906.1cds5781Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5796 ID=rna5796|Name=rna5796|organism=Nannochloropsis gaditana|type=mRNA|length=315bp
ATGGACACGTACGCCGATCGTCACACCACCATAGACATGATCAAGGGACA
AAGGGAACGCGACCAAAAGGTCTCCCCCCTTCTCCAAGCAGTCCGATACG
GGGGCGGGGTTGATGCCCACGCGCGTGCACGACAGACCAGCCGTTTCGAG
GGACGTGACGGCGATGGAAAGGATCTTGCTGCCGGTATTGGCTGGAAACC
TCTGGCCAGGGAGGAGGGTATACTCGACCCGACCCACGAGGGAGATGGTG
ATATTGCGGACCTTTCCTTTCTTGTCCGTGACGGGATAGAATTGCGTGGA
CTGGTAAATAGCTGA
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protein sequence of rna5796

>rna5796-protein ID=rna5796-protein|Name=rna5796|organism=Nannochloropsis gaditana|type=polypeptide|length=131bp
MRGHIRQVALPTLMKDILAGIRSSKRKQEKTAVDGEIARGVVAVNATVVP
IDAHSGLLQTITPEVKDILTRLSASSCGRDAPESLTSLTVYGKLSLRRPA
DGTPPPSSHDLLLLSALHLLHAQSLTKFPSR
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mRNA from alignment at CM002466.1:862819..864946+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5796 ID=rna5796|Name=rna5796|organism=Nannochloropsis gaditana|type=mRNA|length=2128bp|location=Sequence derived from alignment at CM002466.1:862819..864946+ (Nannochloropsis gaditana)
ACCAGGCGGAAACCCCTCTATTGATATTttgctgctttccttcttctttc
cgtcCTTGTAATGTGCTTCTATTTTCTCTTTGCGCTTTCTACTGCCGAAC
TCGGCTTCATTTCCTCTCGACATTTTGCCTTTCTCATTTCTCTATCGATA
TTGCAGCCGCCAGCCTGCTATTTTCACAAGCTATTCGGCCATTCTTTTAC
CTCATTTCAACACCGTCTCTGGCTACGGATGCCATTTTCTTGATTTTTAG
TCTATTTATTCCATGTACTTTTTCTGCATGggtgaggaggcggggagcag
CGGAgccgaagggagggagggcagaggaaaggagggtacAGAGGAGTGAT
ACGGTTCCCATTcatcgctctctcctccactgctctcgtcttccttctcg
aacTCTGTTTCCcactcatcctcctctgctctATCATTATCCAACGCCCC
ATCGCTCCCAgcgctttcttccccctcctcgtccttttcttcttgttccc
CCTCCGGCGCCAGCAACGAACCCGGCACGACACCGAGGGGAGCACCGGTT
CGCCCCTGTTTCGCAAGGAGTACTTGCACGTGGTCGAGCTTCATTCTCAT
CCCTTCTTCGGTATCTGCGTAGGCCATCAGGGTGCCAGTTTCCTGGTACA
TTGTCCACTGCTCGAGGTTGTAAATGCCGTGGCGCACCAAAGCCAGGTCA
TGAGGGGGCATATTCGTCAAGTTGCTTTGCCTACCTTGATGAAGGACATA
CTTGCCGGCATTCGATCCTCCAAAAGGAAACAGGAAAAAACGGCCGTCGA
TGGTGAAATTGCACGTGGCGTTGTCGCCGTAAACGCAACGGTTGTACCCA
TCGATGCTCATAGCGGCCTCTTGCAAACGATCACTCCGGAAGTGAAAGAC
ATTCTTACGGTAAGATGCAGATTGAGCCTCCCAAgatccctttctccatg
tCACACCGATCATGTCTGATGTCCCTACTTGCTCATCCGCGCCTTCTATG
gtcgccaccaccactttTTGTGTCGCCCGTGCGCCGAACGTCGTCTCCTG
CACCCcattcttccccttttctcccctgtTGTCCGCTTCAGCGCCTGTCT
GCTTCTTCCTGTGGAAGAGACGCCCCTGAATCCTTGACGTCCCTGACAGT
GTACGGGAAGCTGAGCTTGAGGAGGCCTGCGGATGGcacacctccccctt
cctcccatgaccttctccttctatcGGCACTGCACCTCCTGCATGCACAG
AGTCTGACCAAGTTCCCTTCTCGCTAGCCCCCTCACTACCTTGTTCATTT
TCACTAACGCTGTCGCTCTcgctgtcttcctccccttccccttccccctg
cacTGATTCTTtcaccccttcttctcccttcttcttggggtcctcgtttt
cctttctccttcctacATTCTCGGCGTGCTCCACAACAAACCGTCCAGCA
ACTCGTCCTCGCTCTTTGTTTCTTGTCTGCTCGATGAGGTGAGCCTTTAT
CAATGGAGCCGCGAAATTCTCCTCCCTGAAGccgaaaggaaggcaagtAG
AAAGGAAATAAAGAAGACGCTTCAGACTGATCATCAGTAGCTTTCAAGCA
CAAACACAGCTGTACCACCGCACTTGTATTGCATTCTTCATTTGAAAAGA
TTGAAATCCTAAAGAAGTAAATATAGCGTGAGAACGTACCATACTCCATC
GTAAAGCATCTGGACGTTCTCTCCCACTGCCCTTTtgatctccgcctccg
tccaccTTCGTTGTCGCCCAGCTTCCACAATTCCGTAGATGAACCAGACC
CCGAACAAGTACATCTGCCATTCGTGAAAGGCCGCTATGGCCCATTGAGg
tctccccacctccctcgcaaTGGCCTCGAAGTCCTCGCCATGCATTTCGG
CAGCCAGGGTTACACGGCGGTGGTCCGCAGCCGTGAAGATTTGGTCATCA
CGTGTTATACCAGAGTGACGTGGATATCCTAGTGTACCAGGAATTCAAGT
GAAGAGTTTACATAATGAAAATATCAGCAAGTAAAGGGTACGAAGGTTTC
TTCTATACTTTCTGATTTCTATATCCCCATTATCATTTTTGCCGCAAATT
TGATATCTAATTCGATCCTAGACTTTCA
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Coding sequence (CDS) from alignment at CM002466.1:862819..864946+

>rna5796 ID=rna5796|Name=rna5796|organism=Nannochloropsis gaditana|type=CDS|length=792bp|location=Sequence derived from alignment at CM002466.1:862819..864946+ (Nannochloropsis gaditana)
ATGAGGGGGCATATTCGTCAAGTTGCTTTGCCTACCTTGATGAAGGACAT
ACTTGCCGGCATTCGATCCTCCAAAAGGAAACAGGAAAAAACGGCCGTCG
ATGGTGAAATTGCACGTGGCGTTGTCGCCGTAAACGCAACGGTTGTACCC
ATCGATGCTCATAGCGGCCTCTTGCAAACGATCACTCCGGAAGTGAAAGA
CATTCTTACGCGCCTGTCTGCTTCTTCCTGTGGAAGAGACGCCCCTGAAT
CCTTGACGTCCCTGACAGTGTACGGGAAGCTGAGCTTGAGGAGGCCTGCG
GATGGcacacctcccccttcctcccatgaccttctccttctatcGGCACT
GCACCTCCTGCATGCACAGAGTCTGACCAAGTTCCCTTCTCGCTAGATGA
GGGGGCATATTCGTCAAGTTGCTTTGCCTACCTTGATGAAGGACATACTT
GCCGGCATTCGATCCTCCAAAAGGAAACAGGAAAAAACGGCCGTCGATGG
TGAAATTGCACGTGGCGTTGTCGCCGTAAACGCAACGGTTGTACCCATCG
ATGCTCATAGCGGCCTCTTGCAAACGATCACTCCGGAAGTGAAAGACATT
CTTACGCGCCTGTCTGCTTCTTCCTGTGGAAGAGACGCCCCTGAATCCTT
GACGTCCCTGACAGTGTACGGGAAGCTGAGCTTGAGGAGGCCTGCGGATG
GcacacctcccccttcctcccatgaccttctccttctatcGGCACTGCAC
CTCCTGCATGCACAGAGTCTGACCAAGTTCCCTTCTCGCTAG
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Synonyms
Publications