EWM24906.1, cds5781 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM24906.1
Unique Name	cds5781
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002466.1:863518..863727 +
Alignment location	CM002466.1:863910..864095 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM24906.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100116g5.9034.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:863518..863727 +
CM002466.1	supercontig	CM002466.1:863910..864095 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM24906.1 vs. NCBI_GenBank
Match: gi|585106533|gb|EWM24906.1| (hypothetical protein Naga_100116g5 [Nannochloropsis gaditana])

HSP 1 Score: 260.381 bits (664), Expect = 6.738e-88
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0

Query:    1 MRGHIRQVALPTLMKDILAGIRSSKRKQEKTAVDGEIARGVVAVNATVVPIDAHSGLLQTITPEVKDILTRLSASSCGRDAPESLTSLTVYGKLSLRRPADGTPPPSSHDLLLLSALHLLHAQSLTKFPSR 131
            MRGHIRQVALPTLMKDILAGIRSSKRKQEKTAVDGEIARGVVAVNATVVPIDAHSGLLQTITPEVKDILTRLSASSCGRDAPESLTSLTVYGKLSLRRPADGTPPPSSHDLLLLSALHLLHAQSLTKFPSR
Sbjct:    1 MRGHIRQVALPTLMKDILAGIRSSKRKQEKTAVDGEIARGVVAVNATVVPIDAHSGLLQTITPEVKDILTRLSASSCGRDAPESLTSLTVYGKLSLRRPADGTPPPSSHDLLLLSALHLLHAQSLTKFPSR 131

The following BLAST results are available for this feature:

BLAST of EWM24906.1 vs. NCBI_GenBank

BLAST of EWM24906.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585106533\|gb\|EWM24906.1\|	6.738e-88	100.00	hypothetical protein Naga_100116g5 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5796	rna5796	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications