rna5791, rna5791 (mRNA) Nannochloropsis gaditana

Overview
Namerna5791
Unique Namerna5791
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1791
Alignment locationCM002466.1:851673..852807 -

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Properties
Property NameValue
Producturacil phosphoribosyltransferase
Orig transcript idgnl|cribi|Naga_100116g10.9015.mrna
Orig protein idgnl|cribi|Naga_100116g10.9015
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:851673..852807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100116g10gene5593Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5791rna5791-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24887.1cds5776Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5791 ID=rna5791|Name=rna5791|organism=Nannochloropsis gaditana|type=mRNA|length=1791bp
GGGTATGGCGACTCGTGGACGTGTGGTGTGATGCCTACGGCGTGTGTGCA
TAGGAGGACTTGGAGGAGGCTGAGATGGTGAGGGGGAAGGGGGAATCCCT
CGGACAAGCGAGGGGTCCCTTAATATGTCTGCGCACCGAACTCGTCCAAA
ATTTTGATTTTGTGTCGAGATGTACACGTCGAATGTTTTGCTTCGTGCGT
ATGCGTGACCGCTGTAAAGTTCAACTCAGTCTCGCCCTCCTCACATGGCC
ATCCCCGCCGGGGCACCCTCTAGTGATGGAACTGAATTTTAACCACTTCG
TCGTCAAAGTTCCTGAGAAAACAAAGGATGCGACCGTCCGTGCCGGTTTT
TTGATGCATTTGACCGAAAGCGAGACGACTGCCCGGCAGGACTTGGAGGA
GGCGCTCGAACGTCTGGCGGCGGACCAGGAGGACTGTTGGCTGGATCACC
GGGGGCCGAACGACGAGGTCATCGACCTCTCCGACCCCGAAAGCTGGGCG
GAAAAGCAGGTGCAGCACACCGTGGCGCCCGGGGAGGAAGGGCTCTACTC
CTTGATTTTCGTTCGCTGCCAGCCCGCTCCCTCGGCCGTATCCTTCAAAA
TCCACGCCAAATTCTACAACCCCGGACCGAATTACCTATCTGCGGGGGAG
GCCCCCTTGCCGACTCTGTACTTCGTCTTTTTCCTCTGCTACCTGGTGGC
GATGGCGGCCTGGGTGGCGGTCTGTCGGCGCCGGAAGGAGCACGTCCACC
GCATCCACAACATGATGCTGGCTCTGCTCGTGTTTAAAACCCTCTCCCTT
CTCTTCGAGGCGGTGCGTTTCCAGGCCTACCAGAAACACGGGCTCACAGG
CCATGCGGACGGGTGGGCGGTCGTGTACTACGTCTTCGCCTTTGTGAAGG
GGATCATGCGCTTCGTTGTGATCCTCCTGATCGGGACCGGGTGGAGCCTG
CTCAAGCCCTACCTGTCCGACCGGGAGAAGAAGGTGGTGCTCGTGGTCCT
GGCCTTGCAGGTGATCGATAACACGGCCATGGTTGTGCTGGACGAGTTGT
CGCAGACGTCGCCCGGATCGGCATCGTGGCTGACATGGAGGGATATCTTC
CATTTGATCGACATCGTATGCTGCTGCGCCATTCTCTTCCCCATCGTCTG
GTCCATCCGCCACCTCCGACAAGCGGCGGCCGCGGACGGCAAGATGGAGC
ATATCCTGCGGAAGCTGACCTTGTTCCGGCAATTCTACCTGATGGTGGTC
GCCTACATCTATTTCACCCGCATCGTGGTGTTCCTGGTCAAAGCCACGCT
TCCCTACGATCTCCTCTGGCTCCAAGCGTTCTTCGATGAGGGGGCCACAT
TTTTGTTCTACACAGTGACAGGATGGAAATTTTGCCCGGCGGACGCAAAC
CCATATTTGGCGGTCGACACGGACGAACGAGACGCGGCAGAATTGGAAGA
GTTTGGACTGGACGATTATGAGGACGATTTGGGCGAGGAGGAGGAGGACA
TGAGGGAGGAAGGGAGGGATGTGGGCGGCATTGAGATGAGGGAAGGTCCG
GGGCACGGGAGGCATCGTGGTCAACCCAAGCCAGGGGGGTGGAATTCTAT
CGTGAGCGTATAGAAGAGAGTTAATGGAAAGAGCCAAAAAAGGAGGACAA
GAAAGTCAAGCACAGCACTGTATGTAAGATATAGCATGTCCTGCCACAAA
ACGGAGGAAATGGAGGAAGACAGACGCAAGAAACTGTAATTGAATAAGGG
CAAGAAACTAAATGGTACGGCGGATGACGAGCAGGAAATCA
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protein sequence of rna5791

>rna5791-protein ID=rna5791-protein|Name=rna5791|organism=Nannochloropsis gaditana|type=polypeptide|length=271bp
MTRASRSIVFPKDTDKIISYQSGIAFPKLPVRPVPMETMLEPTSRNPDDN
VIVPHCHSFPYLYTKIRDCKTSNKDFALYASRILRILAEEAVGMVPSSPC
SIQTPTNTTYAGMRALDDENSLCVVSILRAGDALMEAVRSVVPQAAVAKI
LIQRDESSEEKLPKLFYSKIPSDVNSRFCILCDPMLATGGSALCALSILI
QEGQVPPDNIIFVCVVAAPEGIRAVHTRHPEVKIVTGAIDTGLNEDKYIV
PGLGDFGDRWYNTTGGEKSEA
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mRNA from alignment at CM002466.1:851673..852807-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5791 ID=rna5791|Name=rna5791|organism=Nannochloropsis gaditana|type=mRNA|length=1135bp|location=Sequence derived from alignment at CM002466.1:851673..852807- (Nannochloropsis gaditana)
ATGACGCGGGCATCACGCTCCATCGTTTTTCCCAAAGTAAATACCTTCAA
TAGGATTACGAACAGGCTAACTCAACAAGCAACAGGTCGTGCACGCTTAA
ATTCAGGCAAAGTGCACCCTATTTTGTCGTCCTTCCATTATTTATGACGC
ATATGATCCCTACAAGACCAAGTTTCCCAAAAGGCACGTGCTAGAGACGA
GCATTTACCGCCCCAGAAAGTGTAAAATCGAAAGGGCATATTCCATCACA
ATCGCCGAAAGATCCAGTTGAAGCTCTCGAGGCAGTCGCAAAGTCAGCGT
GAGAGCGTCCGTTCGAGTGCCGGATCTCACGTCAATCCCACTCCTGCTCA
CACAGGATACGGATAAGATCATTTCCTATCAATCTGGTATCGCCTTCCCG
AAGTTGCCGGTAAGGCCTGTTCCGATGGAGACAATGCTCGAACCAACTTC
CCGAAATCCCGACGACAACGTTATCGTGCCGCACTGTCACTCCTTTCCGT
ATCTTTACACCAAAATTCGAGACTGCAAAACTTCAAACAAAGATTTTGCG
TTATATGCGTCCCGCATCCTCAGAATCCTCGCGGAAGAAGCCGTCGGGAT
GGTTCCGTCATCTCCATGCTCCATTCAAACACCCACAAATACTACGTACG
CGGGCATGCGCGCTCTGGACGATGAAAACTCATTATGCGTTGTTTCTATA
CTCCGCGCGGGAGACGCTCTCATGGAGGCGGTTCGCAGTGTCGTGCCTCA
AGCAGCCGTAGCTAAAATTTTGATTCAAAGGGATGAAAGCTCCGAAGAAA
AATTACCCAAGCTCTTCTATTCCAAAATCCCTTCCGATGTGAATTCTCGC
TTTTGTATACTCTGTGATCCAATGCTCGCGACAGGAGGGAGTGCTTTATG
TGCATTGAGCATATTAATCCAGGAAGGGCAGGTTCCACCCGACAACATTA
TCTTCGTATGCGTAGTCGCCGCTCCCGAAGGCATCCGGGCAGTTCACACG
CGGCACCCAGAAGTGAAAATTGTGACAGGCGCTATAGATACGGGACTCAA
TGAAGACAAGTACATCGTACCGGGGTTGGGAGATTTCGGGGATAGGTGGT
ACAATACAACAGGAGGCGAAAAGAGCGAGGCATAG
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Coding sequence (CDS) from alignment at CM002466.1:851673..852807-

>rna5791 ID=rna5791|Name=rna5791|organism=Nannochloropsis gaditana|type=CDS|length=1632bp|location=Sequence derived from alignment at CM002466.1:851673..852807- (Nannochloropsis gaditana)
GATACGGATAAGATCATTTCCTATCAATCTGGTATCGCCTTCCCGAAGTT
GCCGGTAAGGCCTGTTCCGATGGAGACAATGCTCGAACCAACTTCCCGAA
ATCCCGACGACAACGTTATCGTGCCGCACTGTCACTCCTTTCCGTATCTT
TACACCAAAATTCGAGACTGCAAAACTTCAAACAAAGATTTTGCGTTATA
TGCGTCCCGCATCCTCAGAATCCTCGCGGAAGAAGCCGTCGGGATGGTTC
CGTCATCTCCATGCTCCATTCAAACACCCACAAATACTACGTACGCGGGC
ATGCGCGCTCTGGACGATGAAAACTCATTATGCGTTGTTTCTATACTCCG
CGCGGGAGACGCTCTCATGGAGGCGGTTCGCAGTGTCGTGCCTCAAGCAG
CCGTAGCTAAAATTTTGATTCAAAGGGATGAAAGCTCCGAAGAAAAATTA
CCCAAGCTCTTCTATTCCAAAATCCCTTCCGATGTGAATTCTCGCTTTTG
TATACTCTGTGATCCAATGCTCGCGACAGGAGGGAGTGCTTTATGTGCAT
TGAGCATATTAATCCAGGAAGGGCAGGTTCCACCCGACAACATTATCTTC
GTATGCGTAGTCGCCGCTCCCGAAGGCATCCGGGCAGTTCACACGCGGCA
CCCAGAAGTGAAAATTGTGACAGGCGCTATAGATACGGGACTCAATGAAG
ACAAGTACATCGTACCGGGGTTGGGAGATTTCGGGGATAGGTGGTACAAT
ACAACAGGAGGCGAAAAGAGCGAGGCATAGATGACGCGGGCATCACGCTC
CATCGTTTTTCCCAAAGATACGGATAAGATCATTTCCTATCAATCTGGTA
TCGCCTTCCCGAAGTTGCCGGTAAGGCCTGTTCCGATGGAGACAATGCTC
GAACCAACTTCCCGAAATCCCGACGACAACGTTATCGTGCCGCACTGTCA
CTCCTTTCCGTATCTTTACACCAAAATTCGAGACTGCAAAACTTCAAACA
AAGATTTTGCGTTATATGCGTCCCGCATCCTCAGAATCCTCGCGGAAGAA
GCCGTCGGGATGGTTCCGTCATCTCCATGCTCCATTCAAACACCCACAAA
TACTACGTACGCGGGCATGCGCGCTCTGGACGATGAAAACTCATTATGCG
TTGTTTCTATACTCCGCGCGGGAGACGCTCTCATGGAGGCGGTTCGCAGT
GTCGTGCCTCAAGCAGCCGTAGCTAAAATTTTGATTCAAAGGGATGAAAG
CTCCGAAGAAAAATTACCCAAGCTCTTCTATTCCAAAATCCCTTCCGATG
TGAATTCTCGCTTTTGTATACTCTGTGATCCAATGCTCGCGACAGGAGGG
AGTGCTTTATGTGCATTGAGCATATTAATCCAGGAAGGGCAGGTTCCACC
CGACAACATTATCTTCGTATGCGTAGTCGCCGCTCCCGAAGGCATCCGGG
CAGTTCACACGCGGCACCCAGAAGTGAAAATTGTGACAGGCGCTATAGAT
ACGGGACTCAATGAAGACAAGTACATCGTACCGGGGTTGGGAGATTTCGG
GGATAGGTGGTACAATACAACAGGAGGCGAAAAGAGCGAGGCATAGATGA
CGCGGGCATCACGCTCCATCGTTTTTCCCAAA
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Synonyms
Publications