EWM24887.1, cds5776 (CDS) Nannochloropsis gaditana

Overview
NameEWM24887.1
Unique Namecds5776
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:852772..852807 -
Alignment locationCM002466.1:851673..852452 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24887.1
Producturacil phosphoribosyltransferase
Orig transcript idgnl|cribi|Naga_100116g10.9015.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:852772..852807 -
CM002466.1supercontigCM002466.1:851673..852452 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR029057PRTase-like
Homology
BLAST of EWM24887.1 vs. NCBI_GenBank
Match: gi|585106514|gb|EWM24887.1| (uracil phosphoribosyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 559.296 bits (1440), Expect = 0.000e+0
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0
Query:    1 MTRASRSIVFPKDTDKIISYQSGIAFPKLPVRPVPMETMLEPTSRNPDDNVIVPHCHSFPYLYTKIRDCKTSNKDFALYASRILRILAEEAVGMVPSSPCSIQTPTNTTYAGMRALDDENSLCVVSILRAGDALMEAVRSVVPQAAVAKILIQRDESSEEKLPKLFYSKIPSDVNSRFCILCDPMLATGGSALCALSILIQEGQVPPDNIIFVCVVAAPEGIRAVHTRHPEVKIVTGAIDTGLNEDKYIVPGLGDFGDRWYNTTGGEKSEA 271
            MTRASRSIVFPKDTDKIISYQSGIAFPKLPVRPVPMETMLEPTSRNPDDNVIVPHCHSFPYLYTKIRDCKTSNKDFALYASRILRILAEEAVGMVPSSPCSIQTPTNTTYAGMRALDDENSLCVVSILRAGDALMEAVRSVVPQAAVAKILIQRDESSEEKLPKLFYSKIPSDVNSRFCILCDPMLATGGSALCALSILIQEGQVPPDNIIFVCVVAAPEGIRAVHTRHPEVKIVTGAIDTGLNEDKYIVPGLGDFGDRWYNTTGGEKSEA
Sbjct:    1 MTRASRSIVFPKDTDKIISYQSGIAFPKLPVRPVPMETMLEPTSRNPDDNVIVPHCHSFPYLYTKIRDCKTSNKDFALYASRILRILAEEAVGMVPSSPCSIQTPTNTTYAGMRALDDENSLCVVSILRAGDALMEAVRSVVPQAAVAKILIQRDESSEEKLPKLFYSKIPSDVNSRFCILCDPMLATGGSALCALSILIQEGQVPPDNIIFVCVVAAPEGIRAVHTRHPEVKIVTGAIDTGLNEDKYIVPGLGDFGDRWYNTTGGEKSEA 271          
BLAST of EWM24887.1 vs. NCBI_GenBank
Match: gi|751731195|gb|KIM79506.1| (hypothetical protein PILCRDRAFT_823421 [Piloderma croceum F 1598])

HSP 1 Score: 217.624 bits (553), Expect = 2.657e-67
Identity = 111/231 (48.05%), Postives = 150/231 (64.94%), Query Frame = 0
Query:   36 METMLEPTSRN-----PDDNVIVPHCHSFPYLYTKIRDCKTSNKDFALYASRILRILAEEAVGMVPSSPCSIQTPTNTTYAGMRALDDENSLCVVSILRAGDALMEAVRSVVPQAAVAKILIQRDESSEEKLPKLFYSKIPSDVNSRFCILCDPMLATGGSALCALSILIQEGQVPPDNIIFVCVVAAPEGIRAVHTRHPEVKIVTGAIDTGLNEDKYIVPGLGDFGDRWY 261
            M T L PTS+      P     +P       LYT IRD  TS  DF  Y+ RI+R+L EE +  +P  P ++QTPT  TY G+     E  +C VSILRAG+A+   +R V     + KILIQRDE  E  LPKLFYSK P D+ SR+ +L DPMLATGGSA+ A+ +L++ G VP + IIF+ +++APEG++   +R+P+++++TG ID GLNE  YI+PGLGDFG+R Y
Sbjct:    1 MATTLSPTSQVSPASLPPSVFTLPQTAQLEALYTIIRDKDTSRGDFLFYSDRIIRLLVEEGLNHLPVLPKTVQTPTGATYEGV---GFEGKICGVSILRAGEAMEAGLREVCRSVRIGKILIQRDE--ETALPKLFYSKFPQDIASRYVLLLDPMLATGGSAMKAVEVLMEHG-VPEERIIFINLISAPEGLKTFCSRYPQLRVITGWIDKGLNEKAYIIPGLGDFGERRY 225          
BLAST of EWM24887.1 vs. NCBI_GenBank
Match: gi|1021816266|gb|KZP05338.1| (PRTase-like protein [Fibularhizoctonia sp. CBS 109695])

HSP 1 Score: 216.853 bits (551), Expect = 7.853e-67
Identity = 112/231 (48.48%), Postives = 149/231 (64.50%), Query Frame = 0
Query:   36 METMLEPTSRN-----PDDNVIVPHCHSFPYLYTKIRDCKTSNKDFALYASRILRILAEEAVGMVPSSPCSIQTPTNTTYAGMRALDDENSLCVVSILRAGDALMEAVRSVVPQAAVAKILIQRDESSEEKLPKLFYSKIPSDVNSRFCILCDPMLATGGSALCALSILIQEGQVPPDNIIFVCVVAAPEGIRAVHTRHPEVKIVTGAIDTGLNEDKYIVPGLGDFGDRWY 261
            M + + PTS+N     P     +P       LYT IRD  TS  DF  Y+ RI+R+L EEA+  +P    S+QTPT  TY G   L  E  +C VSILRAG+A+   +R V     + KILIQRDE  E  LPKLFYSK P D+ SR+ +L DPMLATGGSA+ A+ +L++ G VP D IIFV ++++PEG++    ++P ++++TG ID GLNE  YI+PGLGDFG+R Y
Sbjct:   18 MASTIAPTSQNSPAGLPPSVFTLPQTAQLEALYTIIRDKDTSRGDFLFYSDRIIRLLVEEALNHLPVVAKSVQTPTGATYDG---LGFEGKICGVSILRAGEAMEAGLREVCRSVRIGKILIQRDE--ETALPKLFYSKFPQDIASRYVLLLDPMLATGGSAMKAVEVLVEHG-VPEDRIIFVNLISSPEGLKTFCAKYPTLRVITGWIDKGLNEQAYIIPGLGDFGERRY 242          
BLAST of EWM24887.1 vs. NCBI_GenBank
Match: gi|597915311|ref|XP_007312000.1| (hypothetical protein SERLADRAFT_375218 [Serpula lacrymans var. lacrymans S7.9] >gi|336375837|gb|EGO04172.1| hypothetical protein SERLA73DRAFT_128291 [Serpula lacrymans var. lacrymans S7.3] >gi|336388973|gb|EGO30116.1| hypothetical protein SERLADRAFT_375218 [Serpula lacrymans var. lacrymans S7.9])

HSP 1 Score: 214.927 bits (546), Expect = 2.940e-66
Identity = 110/231 (47.62%), Postives = 149/231 (64.50%), Query Frame = 0
Query:   36 METMLEPTSRN-----PDDNVIVPHCHSFPYLYTKIRDCKTSNKDFALYASRILRILAEEAVGMVPSSPCSIQTPTNTTYAGMRALDDENSLCVVSILRAGDALMEAVRSVVPQAAVAKILIQRDESSEEKLPKLFYSKIPSDVNSRFCILCDPMLATGGSALCALSILIQEGQVPPDNIIFVCVVAAPEGIRAVHTRHPEVKIVTGAIDTGLNEDKYIVPGLGDFGDRWY 261
            M T   PTS+      P     +P       LYT IRD  TS  DF  Y+ RI+R+L EE +  +P  P ++QTPT  TY G+     E  +C VSILRAG+A+   +R V     + KILIQRDE  E  LPKLFYSK+P D+ SR+ +L DPMLATGGSA+ A+ ++I+ G VP D IIF+ +++APEG++   +++P ++++TG ID GLNE  YI+PGLGDFG+R Y
Sbjct:    1 MATSAAPTSQTSPASLPPSVFTLPQTAQLEALYTIIRDKDTSRGDFLFYSDRIIRLLVEEGLNHLPVIPKTVQTPTGATYEGV---GFEGKICGVSILRAGEAMEAGLREVCRSVRIGKILIQRDE--ETTLPKLFYSKLPEDIASRYVLLLDPMLATGGSAMKAVEVIIEHG-VPEDRIIFINLISAPEGLKTFCSKYPALRVITGWIDKGLNEKAYIIPGLGDFGERRY 225          
BLAST of EWM24887.1 vs. NCBI_GenBank
Match: gi|1072237191|gb|OEU21918.1| (uracil phosphoribosyltransferase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 214.542 bits (545), Expect = 4.196e-66
Identity = 104/202 (51.49%), Postives = 145/202 (71.78%), Query Frame = 0
Query:   62 LYTKIRDCKTSNKDFALYASRILRILAEEAVGMVPSSPCSIQTPTNTTYAGMRALDDENSLCVVSILRAGDALMEAVRSVVPQAAVAKILIQRDESSEEKLPKLFYSKIPSDVNSRFCILCDPMLATGGSALCALSILIQEGQVPPDNIIFVCVVAAPEGIRAVHTRHPEVKIVTGAIDTGLNEDKYIVPGLGDFGDRWYNT 263
            L+TK+RD  TS  DF  Y+ R +RILAE+A+   PS+   I TP  + + G+R   D   +C VSI+R+GDAL+E VR V P   V KILIQRDES  EK  KLFYSK+P D+ +++ +LCDPMLATGGSA+ A+ +L+++  V P  I+F  ++ APEG++ +   +PE+KIVT AID  LN++K+IVPGLGD+GDR++N+
Sbjct:   31 LFTKMRDTSTSPADFVQYSKRSMRILAEDALAEFPSTEVKITTPCGS-FDGVRG-PDPTDICAVSIIRSGDALLEVVREVEPAVRVGKILIQRDESIPEKTAKLFYSKLPPDIANQYVLLCDPMLATGGSAMKAIEVLVEQYNVKPSRILFANMICAPEGLKLLGDAYPEIKIVTAAIDDCLNDEKFIVPGLGDYGDRFFNS 230          
BLAST of EWM24887.1 vs. NCBI_GenBank
Match: gi|1024080691|gb|KZV73599.1| (PRTase-like protein [Peniophora sp. CONT])

HSP 1 Score: 213.386 bits (542), Expect = 1.017e-65
Identity = 99/209 (47.37%), Postives = 145/209 (69.38%), Query Frame = 0
Query:   53 VPHCHSFPYLYTKIRDCKTSNKDFALYASRILRILAEEAVGMVPSSPCSIQTPTNTTYAGMRALDDENSLCVVSILRAGDALMEAVRSVVPQAAVAKILIQRDESSEEKLPKLFYSKIPSDVNSRFCILCDPMLATGGSALCALSILIQEGQVPPDNIIFVCVVAAPEGIRAVHTRHPEVKIVTGAIDTGLNEDKYIVPGLGDFGDRWY 261
            +P  H    LYT IRD  T+  DF  Y+ RI+R+L EE +  +P  P ++ TPT  TY G+     E  +C VSILRAG+A+ + +R V     + KILIQRDE + +  PKLFY+K+P D+ +R+ +L DPMLATGGSA+ A+ ++++ G VP D IIF+ ++++PEG++A + R+P+++++TG ID GLNE  YI+PGLGDFG+R Y
Sbjct:   21 LPRTHQLAALYTIIRDKDTTRGDFIFYSDRIIRLLVEEGLNHLPVLPKTVHTPTGVTYEGV---GFEGKICGVSILRAGEAMEQGLREVCRSVRIGKILIQRDEETAQ--PKLFYAKLPQDIANRYVLLLDPMLATGGSAMKAVEVIMEHG-VPEDRIIFINLISSPEGLQAFYKRYPKLRVITGWIDEGLNEKAYIIPGLGDFGERRY 223          
BLAST of EWM24887.1 vs. NCBI_GenBank
Match: gi|527294133|gb|EPS95000.1| (hypothetical protein FOMPIDRAFT_1033089 [Fomitopsis pinicola FP-58527 SS1])

HSP 1 Score: 213.001 bits (541), Expect = 1.280e-65
Identity = 107/227 (47.14%), Postives = 149/227 (65.64%), Query Frame = 0
Query:   40 LEPTSRN-----PDDNVIVPHCHSFPYLYTKIRDCKTSNKDFALYASRILRILAEEAVGMVPSSPCSIQTPTNTTYAGMRALDDENSLCVVSILRAGDALMEAVRSVVPQAAVAKILIQRDESSEEKLPKLFYSKIPSDVNSRFCILCDPMLATGGSALCALSILIQEGQVPPDNIIFVCVVAAPEGIRAVHTRHPEVKIVTGAIDTGLNEDKYIVPGLGDFGDRWY 261
            + PTS+      P     +PH      LYT IRD  TS  DF  Y+ RI+R+L EE +  +P  P +++TPT  TY G+     E  +C VSILRAG+A+   +R V     + KILIQRDE  E  LPKLFY+K+P D+  R+ +L DPMLATGGSA+ A+ +L++ G VP D IIF+ ++++PEG+++  T++P ++++TG ID GLNE  YIVPGLGDFG+R Y
Sbjct:    1 MSPTSQTTPASVPPSVFTLPHTAQLEALYTIIRDKTTSRGDFLFYSDRIIRLLVEEGLNHLPVVPKTVETPTGATYEGV---GFEGHICGVSILRAGEAMEAGLREVCRSVRIGKILIQRDE--ETALPKLFYAKLPQDIAHRYVLLLDPMLATGGSAMKAVEVLMEHG-VPEDRIIFINLISSPEGLKSFCTKYPALRVITGWIDEGLNEKAYIVPGLGDFGERRY 221          
BLAST of EWM24887.1 vs. NCBI_GenBank
Match: gi|528243403|gb|EPY31626.1| (uracil phosphoribosyltransferase [Strigomonas culicis] >gi|528249872|gb|EPY34175.1| uracil phosphoribosyltransferase [Strigomonas culicis])

HSP 1 Score: 213.772 bits (543), Expect = 1.515e-65
Identity = 102/214 (47.66%), Postives = 145/214 (67.76%), Query Frame = 0
Query:   52 IVPHCHSFPYLYTKIRDCKTSNKDFALYASRILRILAEEAVGMVPSSPCSIQTPTNTTYAGMRALDDENSLCVVSILRAGDALMEAVRSVVPQAAVAKILIQRDESSEEKLP--KLFYSKIPSDVNSRFCILCDPMLATGGSALCALSILIQEGQVPPDNIIFVCVVAAPEGIRAVHTRHPEVKIVTGAIDTGLNEDKYIVPGLGDFGDRWYNT 263
            ++P      +L+T IR+ +T   DF  Y+ RI+R++ E A+ ++P  PC+I+TPT   Y G+R   D   +  VSILRAG+++   +R +     + KIL+QRDE SE+K P  +  YSK+P DV+SR  +L DPM+ATGGSA+ A  IL Q+  VP +NIIF+ +VAAPEGIR   TR P V+ +T AID G+N+ +YI+PGLGDFGDR++ T
Sbjct:   36 LLPQTPQLHFLFTVIRNVETQRTDFVFYSERIMRLILEAALCLIPVQPCNIKTPTGAVYQGVRP--DAKGIIGVSILRAGESMERVLREMCRGVRIGKILVQRDEKSEDKSPDERYNYSKMPKDVSSRHVLLMDPMIATGGSAIKATEILTQQYAVPEENIIFLNLVAAPEGIRRYLTRFPRVQFITAAIDDGMNDQRYILPGLGDFGDRYFGT 247          
BLAST of EWM24887.1 vs. NCBI_GenBank
Match: gi|528247531|gb|EPY33260.1| (uracil phosphoribosyltransferase [Strigomonas culicis])

HSP 1 Score: 213.386 bits (542), Expect = 1.532e-65
Identity = 102/214 (47.66%), Postives = 145/214 (67.76%), Query Frame = 0
Query:   52 IVPHCHSFPYLYTKIRDCKTSNKDFALYASRILRILAEEAVGMVPSSPCSIQTPTNTTYAGMRALDDENSLCVVSILRAGDALMEAVRSVVPQAAVAKILIQRDESSEEKLP--KLFYSKIPSDVNSRFCILCDPMLATGGSALCALSILIQEGQVPPDNIIFVCVVAAPEGIRAVHTRHPEVKIVTGAIDTGLNEDKYIVPGLGDFGDRWYNT 263
            ++P      +L+T IR+ +T   DF  Y+ RI+R++ E A+ ++P  PC+I+TPT   Y G+R   D   +  VSILRAG+++   +R +     + KIL+QRDE SE+K P  +  YSK+P DV+SR  +L DPM+ATGGSA+ A  IL Q+  VP +NIIF+ +VAAPEGIR   TR P V+ +T AID G+N+ +YI+PGLGDFGDR++ T
Sbjct:   27 LLPQTPQLHFLFTVIRNVETQRTDFVFYSERIMRLILEAALCLIPVQPCNIKTPTGAVYQGVRP--DAKGIIGVSILRAGESMERVLREMCRGVRIGKILVQRDEKSEDKSPDERYNYSKMPKDVSSRHVLLMDPMIATGGSAIKATEILTQQYAVPEENIIFLNLVAAPEGIRRYLTRFPRVQFITAAIDDGMNDQRYILPGLGDFGDRYFGT 238          
BLAST of EWM24887.1 vs. NCBI_GenBank
Match: gi|1090874103|ref|XP_018710073.1| (putative uracil phosphoribosyltransferase [Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993] >gi|1037334742|gb|OBA19545.1| putative uracil phosphoribosyltransferase [Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993])

HSP 1 Score: 211.46 bits (537), Expect = 3.946e-65
Identity = 102/211 (48.34%), Postives = 141/211 (66.82%), Query Frame = 0
Query:   51 VIVPHCHSFPYLYTKIRDCKTSNKDFALYASRILRILAEEAVGMVPSSPCSIQTPTNTTYAGMRALDDENSLCVVSILRAGDALMEAVRSVVPQAAVAKILIQRDESSEEKLPKLFYSKIPSDVNSRFCILCDPMLATGGSALCALSILIQEGQVPPDNIIFVCVVAAPEGIRAVHTRHPEVKIVTGAIDTGLNEDKYIVPGLGDFGDRWY 261
            +++P  +    LY+ IRD  T   DF  Y+ RI+R+L EE + ++P    ++Q   N TY G R L     +C VSI+RAG+++   +R       + KILIQRDE  E  LPKLFY K+P D++ R+  L DPMLATGGSA+ A+ +L+  G V  D I+F+ ++AAPEGI+A H ++P+VKI+TG ID  L+EDKYIVPGLGDFGDR+Y
Sbjct:    9 ILLPQTNQLIGLYSIIRDKSTKRGDFVFYSDRIIRLLVEEGLNLLPVENATVQCHGNQTYNGARFL---GKICGVSIVRAGESMELGLRDCCRSVKIGKILIQRDE--ETALPKLFYEKLPEDISERYVFLLDPMLATGGSAMMAVEVLLSRG-VKADRILFLNLLAAPEGIQAFHEKYPDVKIITGGIDEKLDEDKYIVPGLGDFGDRYY 213          
The following BLAST results are available for this feature:
BLAST of EWM24887.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106514|gb|EWM24887.1|0.000e+0100.00uracil phosphoribosyltransferase [Nannochloropsis ... [more]
gi|751731195|gb|KIM79506.1|2.657e-6748.05hypothetical protein PILCRDRAFT_823421 [Piloderma ... [more]
gi|1021816266|gb|KZP05338.1|7.853e-6748.48PRTase-like protein [Fibularhizoctonia sp. CBS 109... [more]
gi|597915311|ref|XP_007312000.1|2.940e-6647.62hypothetical protein SERLADRAFT_375218 [Serpula la... [more]
gi|1072237191|gb|OEU21918.1|4.196e-6651.49uracil phosphoribosyltransferase [Fragilariopsis c... [more]
gi|1024080691|gb|KZV73599.1|1.017e-6547.37PRTase-like protein [Peniophora sp. CONT][more]
gi|527294133|gb|EPS95000.1|1.280e-6547.14hypothetical protein FOMPIDRAFT_1033089 [Fomitopsi... [more]
gi|528243403|gb|EPY31626.1|1.515e-6547.66uracil phosphoribosyltransferase [Strigomonas culi... [more]
gi|528247531|gb|EPY33260.1|1.532e-6547.66uracil phosphoribosyltransferase [Strigomonas culi... [more]
gi|1090874103|ref|XP_018710073.1|3.946e-6548.34putative uracil phosphoribosyltransferase [Metschn... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5791rna5791Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications