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Properties
| Property Name | Value |
|---|
| Product | set and mynd domain containing 2 |
| Orig transcript id | gnl|cribi|Naga_100116g12.9033.mrna |
| Orig protein id | gnl|cribi|Naga_100116g12.9033 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:846345..849512 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5788 ID=rna5788|Name=rna5788|organism=Nannochloropsis gaditana|type=mRNA|length=2220bp
ATGCTCTCATCCTTAAGCGGCGTACGCTGTGTCTTTCTGGTCCTCCTCTT
CATTTGCCTGTCAGGAGGCGTTGTTGCCTTCCTTCCTGCGTCTGTATTGC
CCACTCGGGAAAGTTCCTTCCCGTCTCGCTTGCATGCTGAAAACAAGCAT
AACGGGGACAATAAACCAGGATCGAACGGGTTAAACACTCTTTTTTCTCC
GCCGTCTATGACCAATCCATTCGAAGCCTTGGGAAAGCAATTGACATTTT
TCTTTGAAAAATTGACCGGGGGAACCGATACTAATTCCGCGATGGCCTCT
CGGGCCCTTCCGCCCCCACCTCCCTCGGTTCGTCGCACCGGTGGACCAGT
CTCCGTTGTTTTTGGCGCCACTGGTCGGGCAGGGCGTGAAATTGTGCAAG
CGTTGTTACGGGAAGGACATGATGTGGTGGCCGCGGTGAGGAACGAATCG
AAACTGAACGAAGTGTTTGGGGCGTCTGCGCTGAGTGGAGCAACGCCTGC
CAGTCCAGGACATGGATTGTTGGACTATATCAGTGGGATTGACGTCACCA
ATGCAGCCACTCTAAGCAGTGGTAAGGTGCCTGCAGTGTTGAAGGAGGCA
TGCCATGTGGTCGTCGCCCTCGGTCCTGTTGGAGGGGTGCAGCCGGGGGG
CGGTTTTGGGTTCTTTCCAGGGTTGACGAGCGAAGACGTCGACTTCAAGG
GTGTTACGAAGGTCATCGACGCGGTGGTGGACGCAAAGGGGGTGGTGAAG
GAAGGGGCAGGGGAAGGTGGAAAGAAAAAAGCCGCGGGAGAAGTGGAGGA
GAGGAAGAGAACGCTTTTCCGGTTCGAGACGCCCGAGGACGTGGCCAAAT
GGCAGCGGCTGGACGACGTGATCATGGGGGGGCAATCTTCCTCCTCTTTG
GAGCTGGACAGAGAGAAAGGCTACGCGACGTACACGGGGAGCCTGGTTGT
GGAAGGTGGTGGCTTTTGTGGAACTCGAGCCTCCGGGGGCGACGCATCGG
TGGATTTGTCGGGCTTTGATGGCGTGACCCTGCGGGTCCGGGGGGACGGG
CACCGTTACAAATTAAATCTAAAGACGACCGAAACCCTCGCGTCGGAAAA
CGTCTATCAGGCAGCTTTCGACACGCTTCCACTCCAGGACGTGGGAGAGG
GAGCGGGGGGATGGCAAACCATCACCATCCCTTTCCATCGATTCTATCCC
GTGGTTCGAAACCGGGTCGACTACAAAGCAGCCCCCCTGCAACCGTCCTC
CCAGGCAGCGGTGAGTCTCGGCTTGGTCTACTCCCGTTTTGAGTTCAACC
GACAAGCGAATCCATACTACGACCCGGGTGCTTTCTCTCTATCATTGGAG
GAAATTGCCCTCTATCGCTCCCGCCGTCCCTCCCTCGTCCTGGTCTCCTC
GGCTGGCGCAGAGCGAAACGCGAAGGTCGAGACGGAAGAGGATCGCAAGA
CGGAAATCCCCATTGTGATGCTCAACCCGGGAGGGATTCTAAATTGGAAG
TACCGCGCTGAGACCTACCTTCGGGCCTCACCCCTGCCATACACCATCCT
CCGACCCTGTGGCCTGGTCCCGGAGAAAGCCTTCGGCGACGAGCCCTCCA
CTGGGAAACTTCAAGCAGGGCAAGGCGATACTATCACGGGTAGGTTGACC
CGACAAGACTTAGGGCTGGCCGTGGCTGCGGCTTTGGCCTCCCCGTACAG
CGCGGGTAAAACGATGGAAATTCGCAGGGACGAAGCAGCAGATGCCAATG
CTATGACGGGGGTGGGGCGACGACCGAGGACCACGGCCGTAACGGCCCTG
GAACTCTTTCAACCGTTGGTGGCTGATAAAGACCGAGCAGTGTCCGGCAC
GTCGGGACTCTTACCGTTCCCTGAGGCAGTCGATCCTCCCCAGGAGGTTT
CTCCGGAACGAGCCAAGGAGATTTTGAACGATCCGCGGGTGAAAGCGCAG
CAAGACAGGGATCGGGCCCTGGTGGAGTCAGGCGCATTGCAGAAAGGGCA
AGGAGGGGGAGGAAGGTATGTAGGTGTGTGTGCTGTGCGTATTTGTAGAG
GGTCGGTGCCTGATGGCGCCTCGGCGCGGGTGCATGTCCAGAACAGTGTA
ATTTATTCGAATAATGCTTTGTCATTCAACGAACCAAAAACCAAGTCTTT
GCCAGATATCCCCCTTTGTTTCGGAAGAAAGAAAGTCATGCCGTCCAAAT
GTAGTCTCTGTCCTTTTTAG back to topprotein sequence of rna5788 >rna5788-protein ID=rna5788-protein|Name=rna5788|organism=Nannochloropsis gaditana|type=polypeptide|length=773bp
MTDLLPSSFLLAAFVGVSVPDHGTETSSSAGSKARSIVEHVNLSGDLDGP
LLLRRHHPDGSSSQAWVPPAVLLPSKPPLSSISSARAPFSASPPGLLTKT
DWKGKGRYTIIAPGASVLEGTKILSSPCFTAVIASKVLDKWCTVCLRRLP
AKARRLGCKSCNMAYYCSEACLDRDGSLHDLICLFLGRVRAHARRLAANQ
RLPKQPETSPQPRQSSPQFSFFDTDTLRLAVQVIGSLDHSYHFLRSRKHT
SGSIPPDHSREPPEPMSKIMDLSVQEDAEYGTIWKEALELARGLGAPMTE
AEREACGGVGRRGENYLEGNAEFFAGLLVRLRVNCHPFRAYKPRNSKLQG
SDDRHHEAGGAPALGLFLSLASTVNHSCRPVASFNALIRPQPAESRNSQG
ESGQRWWYQDVVAELRAVRAMTAGEEVTYSYLEHLHFSRKERQDFLWQAF
RFHCQCPRCEEEGGKEGGSEGGTQGWACFTCGGRVEAIREDTGRQRTRGQ
EGSKQSCGEVARVEGNDWIQCRNQPRACPTRTPESLYLRVEGQGAKLLDR
GIRATTISLSSSLSRPFPVQEGNMRGGTGKDDQQKAMRALVKWLAGSGKT
VGCKEGKKEEVEGSARFWNDTHPQRHMAAMLLVRMAQTGGRTEENKSTAT
KEGQPRPGTTVEEDVALAVGTGVLNMYMAAHGLERQPHGATLSMLKVKAM
WRLVQRLERGGESVSRAQVWRLAMRHAATREGEKSLDLFRIVHGSDHPLT
LEAVRALKSLDAGAFGDICDMPA back to topmRNA from alignment at CM002466.1:846345..849512- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna5788 ID=rna5788|Name=rna5788|organism=Nannochloropsis gaditana|type=mRNA|length=3168bp|location=Sequence derived from alignment at CM002466.1:846345..849512- (Nannochloropsis gaditana)
CATCATGCAAAGTCACTACACATTGTGATCGACGACAACCTCCATCGATA
ACTCACCTCCCCCTGGTCGAAACCCAAAAGTCTCGAGCTGGAACATGGGG
CTTGTCTCGTCCTCGTAATGGAAATTTTGAACCATACCATCGGCGACTCT
TGCAAGGACCCCAAGGAGAAGAATAGAAGAGATGACTCGGCACCACGGCG
AATAAGCCTGGATGCAGCCGTGTTGTAGCGGCATGGTTGCTAAGTAGAAG
CGAGTTCGTCCTCGACGTGAAGCAAAGTGAGACTTCAGCGATACCGGAAA
ACAGTGACCGCAACACTTTCCACGCGCCCGCGGCTATCTACCAAGCGGGG
CACGTCTGTAATTCGATGGTGGGCTACACGTGAGCGTGAGGAGTCGGTGG
AATTACGACGTGAAAGAGAAAAAAATGAAAGACGGGTCTCGTTCGGCAAG
CCTCGTTAGAATCAGCTTCTCGCCCTCCCGTCGGCGCATAAACTGTACCC
TCTCATCTTCCCCTGCTGCTTTTGACTTTTCAGCGCTTCGTCCCAACCTT
TTCTGGCATCTAGTGCTTTTATTCCTTCGACAGACTTCTTCCAAATGCTC
TCGCGGATGCTTTCGGTATGACTGATCTTTTACCGTCCTCCTTCCTCCTC
GCTGCCTTCGTGGGAGTATCCGTTCCTGATCATGGCACTGAAACTTCTTC
TTCGGCGGGCTCGAAAGCAAGAAGTATCGTTGAACACGTGAATCTCTCTG
GTGATTTGGACGGACCTCTTTTGCTGCGGCGGCACCATCCTGATGGTAGC
TCTAGTCAAGCCTGGGTTCCGCCCGCCGTCCTGCTGCCCTCCAAGCCCCC
CTTATCATCAATCTCTTCGGCCAGGGCCCCCTTTTCCGCATCACCACCCG
GTCTACTCACGAAAACAGACTGGAAAGGTAAAGGGCGGTACACGATCATA
GCTCCCGGTGCCAGCGTTCTTGAAGGGACAAAGATACTATCGTCACCGTG
CTTTACGGCCGTCATTGCCAGTAAAGTCCTTGATAAATGGTGCACGGTCT
GTCTTCGAAGGCTTCCCGCCAAAGCACGCAGGCTTGGGTGTAAGAGTTGC
AACATGGCCTACTATTGCTCCGAGGCTTGCTTGGACCGAGACGGCTCTTT
GCATGACCTGATCTGCCTCTTCCTCGGTCGCGTCCGTGCACACGCCCGCC
GACTAGCAGCAAACCAGCGCCTACCAAAACAGCCAGAAACGAGCCCACAG
CCACGGCAAAGTAGTCCACAATTTTCCTTTTTTGACACAGACACTCTCCG
CTTGGCCGTCCAAGTGATTGGCAGCTTGGACCACAGCTATCATTTCCTCC
GCAGCCGCAAGCACACTTCCGGCTCCATCCCCCCCGACCACAGCCGAGAG
CCTCCGGAGCCAATGTCCAAGATCATGGATTTAAGCGTCCAGGAGGATGC
GGAGTATGGTACAATCTGGAAGGAAGCTTTGGAGTTGGCGCGTGGACTGG
GGGCGCCCATGACCGAAGCAGAGCGGGAGGCATGTGGGGGCGTGGGGAGA
CGCGGAGAGAATTATCTCGAGGGAAATGCCGAGTTTTTCGCGGGCCTGCT
GGTGCGTCTGAGGGTCAATTGTCACCCTTTCCGGGCTTACAAGCCCCGAA
ATTCCAAACTACAGGGTTCTGACGATCGGCACCACGAGGCAGGGGGGGCC
CCTGCCTTAGGTCTTTTCCTCAGCCTGGCCAGCACTGTGAACCATTCTTG
CCGGCCGGTCGCGTCATTCAACGCCTTGATTCGTCCACAGCCTGCCGAGT
CAAGAAATAGCCAGGGAGAAAGTGGGCAGCGATGGTGGTATCAGGACGTG
GTGGCCGAATTGCGAGCCGTTCGGGCCATGACGGCGGGGGAGGAAGTTAC
GTATTCCTATCTGGAACACTTGCATTTCAGTCGGAAAGAACGGCAGGACT
TTTTGTGGCAAGCCTTTCGATTCCACTGTCAGTGTCCACGCTGCGAAGAG
GAGGGAGGGAAGGAGGGCGGGAGCGAGGGAGGGACGCAGGGATGGGCGTG
CTTCACGTGCGGAGGACGGGTGGAAGCGATCCGGGAGGATACGGGACGCC
AGAGAACGAGAGGGCAGGAAGGGAGTAAGCAGAGTTGTGGGGAGGTGGCC
CGCGTGGAGGGAAATGACTGGATACAATGCCGGAACCAACCGCGTGCCTG
CCCCACGCGGACGCCGGAGTCGCTCTACCTGAGGGTTGAGGGACAGGGTG
CAAAGCTTCTTGACAGGGGCATTCGCGCCACCACCATCTCTTTGTCCTCT
TCCCTTTCCCGCCCATTTCCCGTTCAGGAAGGCAATATGAGGGGGGGCAC
AGGGAAGGATGACCAACAAAAAGCAATGCGGGCATTGGTCAAGTGGTTGG
CGGGATCAGGGAAGACCGTTGGATGCAAGGAAGGGAAAAAGGAGGAAGTG
GAAGGAAGCGCACGTTTTTGGAACGACACGCATCCTCAACGTCACATGGC
GGCCATGCTCTTGGTGCGAATGGCGCAGACGGGCGGGAGAACCGAAGAAA
ATAAATCGACGGCTACTAAGGAAGGGCAGCCCCGGCCTGGGACGACGGTG
GAGGAGGATGTAGCCCTGGCCGTCGGGACGGGGGTATTAAACATGTATAT
GGCAGCTCATGGGCTCGAAAGACAGCCGCACGGAGCAACGTTGTCCATGT
TGAAGGTCAAGGCAATGTGGAGGCTGGTGCAGCGCCTGGAGAGGGGAGGA
GAATCGGTAAGTAGGGCCCAGGTATGGAGACTGGCCATGAGGCATGCGGC
AACGAGGGAGGGGGAAAAGTCTTTGGATTTGTTTAGAATAGTTCACGGCA
GTGATCACCCGCTCACTCTGGAGGCAGTCAGGGCCTTGAAATCTCTGGAC
GCAGGGGCATTTGGGGATATATGTGACATGCCCGCATGAGCGCTTGTGGG
CCGTTCCTGAGTGTTCCCCCTGATCCCCGGCATGCCAGCTTCTCATTTTT
TTTAGATAACAGAGATTGAGGAACTTCTAGCGTACTAAAAAGGACAGAGA
CTACATTTGGACGGCATGACTTTCTTTCTTCCGAAACAAAGGGGGATATC
TGGCAAAGACTTGGTTTTTGGTTCGTTGAATGACAAAGCATTATTCGAAT
AAATTACACTGTTCTGGA back to topCoding sequence (CDS) from alignment at CM002466.1:846345..849512- >rna5788 ID=rna5788|Name=rna5788|organism=Nannochloropsis gaditana|type=CDS|length=2322bp|location=Sequence derived from alignment at CM002466.1:846345..849512- (Nannochloropsis gaditana)
ATGACTGATCTTTTACCGTCCTCCTTCCTCCTCGCTGCCTTCGTGGGAGT
ATCCGTTCCTGATCATGGCACTGAAACTTCTTCTTCGGCGGGCTCGAAAG
CAAGAAGTATCGTTGAACACGTGAATCTCTCTGGTGATTTGGACGGACCT
CTTTTGCTGCGGCGGCACCATCCTGATGGTAGCTCTAGTCAAGCCTGGGT
TCCGCCCGCCGTCCTGCTGCCCTCCAAGCCCCCCTTATCATCAATCTCTT
CGGCCAGGGCCCCCTTTTCCGCATCACCACCCGGTCTACTCACGAAAACA
GACTGGAAAGGTAAAGGGCGGTACACGATCATAGCTCCCGGTGCCAGCGT
TCTTGAAGGGACAAAGATACTATCGTCACCGTGCTTTACGGCCGTCATTG
CCAGTAAAGTCCTTGATAAATGGTGCACGGTCTGTCTTCGAAGGCTTCCC
GCCAAAGCACGCAGGCTTGGGTGTAAGAGTTGCAACATGGCCTACTATTG
CTCCGAGGCTTGCTTGGACCGAGACGGCTCTTTGCATGACCTGATCTGCC
TCTTCCTCGGTCGCGTCCGTGCACACGCCCGCCGACTAGCAGCAAACCAG
CGCCTACCAAAACAGCCAGAAACGAGCCCACAGCCACGGCAAAGTAGTCC
ACAATTTTCCTTTTTTGACACAGACACTCTCCGCTTGGCCGTCCAAGTGA
TTGGCAGCTTGGACCACAGCTATCATTTCCTCCGCAGCCGCAAGCACACT
TCCGGCTCCATCCCCCCCGACCACAGCCGAGAGCCTCCGGAGCCAATGTC
CAAGATCATGGATTTAAGCGTCCAGGAGGATGCGGAGTATGGTACAATCT
GGAAGGAAGCTTTGGAGTTGGCGCGTGGACTGGGGGCGCCCATGACCGAA
GCAGAGCGGGAGGCATGTGGGGGCGTGGGGAGACGCGGAGAGAATTATCT
CGAGGGAAATGCCGAGTTTTTCGCGGGCCTGCTGGTGCGTCTGAGGGTCA
ATTGTCACCCTTTCCGGGCTTACAAGCCCCGAAATTCCAAACTACAGGGT
TCTGACGATCGGCACCACGAGGCAGGGGGGGCCCCTGCCTTAGGTCTTTT
CCTCAGCCTGGCCAGCACTGTGAACCATTCTTGCCGGCCGGTCGCGTCAT
TCAACGCCTTGATTCGTCCACAGCCTGCCGAGTCAAGAAATAGCCAGGGA
GAAAGTGGGCAGCGATGGTGGTATCAGGACGTGGTGGCCGAATTGCGAGC
CGTTCGGGCCATGACGGCGGGGGAGGAAGTTACGTATTCCTATCTGGAAC
ACTTGCATTTCAGTCGGAAAGAACGGCAGGACTTTTTGTGGCAAGCCTTT
CGATTCCACTGTCAGTGTCCACGCTGCGAAGAGGAGGGAGGGAAGGAGGG
CGGGAGCGAGGGAGGGACGCAGGGATGGGCGTGCTTCACGTGCGGAGGAC
GGGTGGAAGCGATCCGGGAGGATACGGGACGCCAGAGAACGAGAGGGCAG
GAAGGGAGTAAGCAGAGTTGTGGGGAGGTGGCCCGCGTGGAGGGAAATGA
CTGGATACAATGCCGGAACCAACCGCGTGCCTGCCCCACGCGGACGCCGG
AGTCGCTCTACCTGAGGGTTGAGGGACAGGGTGCAAAGCTTCTTGACAGG
GGCATTCGCGCCACCACCATCTCTTTGTCCTCTTCCCTTTCCCGCCCATT
TCCCGTTCAGGAAGGCAATATGAGGGGGGGCACAGGGAAGGATGACCAAC
AAAAAGCAATGCGGGCATTGGTCAAGTGGTTGGCGGGATCAGGGAAGACC
GTTGGATGCAAGGAAGGGAAAAAGGAGGAAGTGGAAGGAAGCGCACGTTT
TTGGAACGACACGCATCCTCAACGTCACATGGCGGCCATGCTCTTGGTGC
GAATGGCGCAGACGGGCGGGAGAACCGAAGAAAATAAATCGACGGCTACT
AAGGAAGGGCAGCCCCGGCCTGGGACGACGGTGGAGGAGGATGTAGCCCT
GGCCGTCGGGACGGGGGTATTAAACATGTATATGGCAGCTCATGGGCTCG
AAAGACAGCCGCACGGAGCAACGTTGTCCATGTTGAAGGTCAAGGCAATG
TGGAGGCTGGTGCAGCGCCTGGAGAGGGGAGGAGAATCGGTAAGTAGGGC
CCAGGTATGGAGACTGGCCATGAGGCATGCGGCAACGAGGGAGGGGGAAA
AGTCTTTGGATTTGTTTAGAATAGTTCACGGCAGTGATCACCCGCTCACT
CTGGAGGCAGTCAGGGCCTTGAAATCTCTGGACGCAGGGGCATTTGGGGA
TATATGTGACATGCCCGCATGA back to top
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