EWM24905.1, cds5773 (CDS) Nannochloropsis gaditana

Overview
NameEWM24905.1
Unique Namecds5773
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:846574..848895 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24905.1
Productset and mynd domain containing 2
Orig transcript idgnl|cribi|Naga_100116g12.9033.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:846574..848895 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND
Homology
BLAST of EWM24905.1 vs. NCBI_GenBank
Match: gi|585106532|gb|EWM24905.1| (set and mynd domain containing 2 [Nannochloropsis gaditana])

HSP 1 Score: 1593.94 bits (4126), Expect = 0.000e+0
Identity = 773/773 (100.00%), Postives = 773/773 (100.00%), Query Frame = 0
Query:    1 MTDLLPSSFLLAAFVGVSVPDHGTETSSSAGSKARSIVEHVNLSGDLDGPLLLRRHHPDGSSSQAWVPPAVLLPSKPPLSSISSARAPFSASPPGLLTKTDWKGKGRYTIIAPGASVLEGTKILSSPCFTAVIASKVLDKWCTVCLRRLPAKARRLGCKSCNMAYYCSEACLDRDGSLHDLICLFLGRVRAHARRLAANQRLPKQPETSPQPRQSSPQFSFFDTDTLRLAVQVIGSLDHSYHFLRSRKHTSGSIPPDHSREPPEPMSKIMDLSVQEDAEYGTIWKEALELARGLGAPMTEAEREACGGVGRRGENYLEGNAEFFAGLLVRLRVNCHPFRAYKPRNSKLQGSDDRHHEAGGAPALGLFLSLASTVNHSCRPVASFNALIRPQPAESRNSQGESGQRWWYQDVVAELRAVRAMTAGEEVTYSYLEHLHFSRKERQDFLWQAFRFHCQCPRCEEEGGKEGGSEGGTQGWACFTCGGRVEAIREDTGRQRTRGQEGSKQSCGEVARVEGNDWIQCRNQPRACPTRTPESLYLRVEGQGAKLLDRGIRATTISLSSSLSRPFPVQEGNMRGGTGKDDQQKAMRALVKWLAGSGKTVGCKEGKKEEVEGSARFWNDTHPQRHMAAMLLVRMAQTGGRTEENKSTATKEGQPRPGTTVEEDVALAVGTGVLNMYMAAHGLERQPHGATLSMLKVKAMWRLVQRLERGGESVSRAQVWRLAMRHAATREGEKSLDLFRIVHGSDHPLTLEAVRALKSLDAGAFGDICDMPA 773
            MTDLLPSSFLLAAFVGVSVPDHGTETSSSAGSKARSIVEHVNLSGDLDGPLLLRRHHPDGSSSQAWVPPAVLLPSKPPLSSISSARAPFSASPPGLLTKTDWKGKGRYTIIAPGASVLEGTKILSSPCFTAVIASKVLDKWCTVCLRRLPAKARRLGCKSCNMAYYCSEACLDRDGSLHDLICLFLGRVRAHARRLAANQRLPKQPETSPQPRQSSPQFSFFDTDTLRLAVQVIGSLDHSYHFLRSRKHTSGSIPPDHSREPPEPMSKIMDLSVQEDAEYGTIWKEALELARGLGAPMTEAEREACGGVGRRGENYLEGNAEFFAGLLVRLRVNCHPFRAYKPRNSKLQGSDDRHHEAGGAPALGLFLSLASTVNHSCRPVASFNALIRPQPAESRNSQGESGQRWWYQDVVAELRAVRAMTAGEEVTYSYLEHLHFSRKERQDFLWQAFRFHCQCPRCEEEGGKEGGSEGGTQGWACFTCGGRVEAIREDTGRQRTRGQEGSKQSCGEVARVEGNDWIQCRNQPRACPTRTPESLYLRVEGQGAKLLDRGIRATTISLSSSLSRPFPVQEGNMRGGTGKDDQQKAMRALVKWLAGSGKTVGCKEGKKEEVEGSARFWNDTHPQRHMAAMLLVRMAQTGGRTEENKSTATKEGQPRPGTTVEEDVALAVGTGVLNMYMAAHGLERQPHGATLSMLKVKAMWRLVQRLERGGESVSRAQVWRLAMRHAATREGEKSLDLFRIVHGSDHPLTLEAVRALKSLDAGAFGDICDMPA
Sbjct:    1 MTDLLPSSFLLAAFVGVSVPDHGTETSSSAGSKARSIVEHVNLSGDLDGPLLLRRHHPDGSSSQAWVPPAVLLPSKPPLSSISSARAPFSASPPGLLTKTDWKGKGRYTIIAPGASVLEGTKILSSPCFTAVIASKVLDKWCTVCLRRLPAKARRLGCKSCNMAYYCSEACLDRDGSLHDLICLFLGRVRAHARRLAANQRLPKQPETSPQPRQSSPQFSFFDTDTLRLAVQVIGSLDHSYHFLRSRKHTSGSIPPDHSREPPEPMSKIMDLSVQEDAEYGTIWKEALELARGLGAPMTEAEREACGGVGRRGENYLEGNAEFFAGLLVRLRVNCHPFRAYKPRNSKLQGSDDRHHEAGGAPALGLFLSLASTVNHSCRPVASFNALIRPQPAESRNSQGESGQRWWYQDVVAELRAVRAMTAGEEVTYSYLEHLHFSRKERQDFLWQAFRFHCQCPRCEEEGGKEGGSEGGTQGWACFTCGGRVEAIREDTGRQRTRGQEGSKQSCGEVARVEGNDWIQCRNQPRACPTRTPESLYLRVEGQGAKLLDRGIRATTISLSSSLSRPFPVQEGNMRGGTGKDDQQKAMRALVKWLAGSGKTVGCKEGKKEEVEGSARFWNDTHPQRHMAAMLLVRMAQTGGRTEENKSTATKEGQPRPGTTVEEDVALAVGTGVLNMYMAAHGLERQPHGATLSMLKVKAMWRLVQRLERGGESVSRAQVWRLAMRHAATREGEKSLDLFRIVHGSDHPLTLEAVRALKSLDAGAFGDICDMPA 773          
BLAST of EWM24905.1 vs. NCBI_GenBank
Match: gi|1183328268|gb|ORX58018.1| (SET domain-containing protein [Hesseltinella vesiculosa])

HSP 1 Score: 89.7373 bits (221), Expect = 5.734e-15
Identity = 103/406 (25.37%), Postives = 155/406 (38.18%), Query Frame = 0
Query:   87 APFSASP----PGLLTKTDWKGKGRYTIIAPGASVLEGTKILSSPCFTAVIASKVLDKWCTVCLRRLPAKARRLGCKSCNMAYYCSEACLDRDGSLHDLICLFLGRVRAHARRLAANQRLPKQPETSPQPRQSSPQFSFFDTDTLRLAVQVIGSLDHSYHFLRSRKHTSGSIPPDHSREPPEPMSKIMDLSVQEDAEYGTIWKEALELARGLGAPMTEAEREACGGVGRRGENYLEGNAEFFAGLLVRLRVNCHPFRAYKPRNSKLQGSDDRHHEAGGAPALGLFLSLASTVNHSCRPVASFNALIRPQPAESRNSQGESGQRWWYQDVVAELRAVRAMTAGEEVTYSYLEHLHFSRKERQDFLWQAFRFHCQCPRCEEEGGKEGGSEGGTQGWACFTCGGRVEAI 488
            APF +      P  L  T  K  GR+ + A       GT +        V+ S  LD+ C VCL  LPAK   + C+ C M +YCS+AC+++D + H  +C  L    AHA                    QS  Q +  D D LRL + ++ S D +                D S+ P   +  +M  S +E AE   +        R +    T A R     + +  +   +   E    L  R+  N H     + RN+ +              ALGLF   A   NH C P  +F  L             ++GQ  +        R +R +   EE+  SY++ L+  R +R+  L  +  F C+C RC  +   +G  +   QG  C  C   V  +
Sbjct:   44 APFYSDTMQRFPVQLKNT--KANGRHAVAAEALDA--GTTVCLEKATAFVVRSPYLDQQCHVCLGDLPAK---MACQDCRMVFYCSQACIEKDEATHLKVCSLL----AHA--------------------QSIGQSTDVDPDLLRLIIMLVASRDDN----------------DISKTPYWCVDDLM--SHREKAEPSFV--------RVIS---TAANR----LIAQDPDLMHDLTVEDIVSLACRINSNAHGLGDNQSRNTDV--------------ALGLFPLGAMFFNHGCNPNTAFVGL-------------DNGQLAF--------RTIRPVAKDEELVVSYID-LYDGRDDRRQILLTSKHFWCKCKRC--QSNMQGSVDRFLQGVVCKACQQDVYVV 347          
BLAST of EWM24905.1 vs. NCBI_GenBank
Match: gi|758355564|dbj|GAN02388.1| (SET domain-containing protein [Mucor ambiguus])

HSP 1 Score: 83.1889 bits (204), Expect = 5.925e-13
Identity = 98/410 (23.90%), Postives = 143/410 (34.88%), Query Frame = 0
Query:   79 LSSISSARAPFSASPPGLLTKTDWKGKGRYTIIAPGASVLEGTKILSSPCFTAVIASKVLDKWCTVCLRRLPAKARRLGCKSCNMAYYCSEACLDRDGSLHDLICLFLGRVRAHARRLAANQRLPKQPETSPQPRQSSPQFSFFDTDTLRLAVQVIGSLDHSYHFLRSRKHTSGSIPPDHSREPPEPMSKIMDLSVQEDAEYGTIWKEALELARGLGAPMTEAEREACGGVGRRGENYLEGNAEFFAGLLVRLRVNCHPFRAYKPRNSKLQGSDDRHHEAGGAPALGLFLSLASTVNHSCRPVASFNALIRPQPAESRNSQGESGQRWWYQDVVAELRAVRAMTAGEEVTYSYLEHLHFSRKERQDFLWQAFRFHCQCPRCEEEGGKEGGSEGGTQGWACFTCGGRVEAI 488
            ++ +SS      AS P  L  T  K KGR+ +   G    EGT +        V+ S+ +D+ C VCL  L  K   + C  C   +YCS+ CL++D  LH LIC  + +  A  R                         +  D D LRL   ++          R    T      + +   P P   + DL    D       K   E ++ L   M++                ++   +    L  R+  N H       RN+ +              ALGLF   A   NH C P  +F  +   Q A                      R +R +   EE+  SY++ L+  R ER+  L Q+  F C+C RC      E   +   QG  C  C   V  I
Sbjct:   41 VTPLSSFYQKALASYPVKLNNT--KVKGRHAVAEIGLE--EGTTLCQEQATAFVVRSEYIDQQCHVCLSDLKQK---MMCSDCKKTFYCSQDCLEKDNDLHVLICAPIAQTEAIGRA------------------------TDVDADLLRLMTLLMA---------RRYLDTQNQDSTEDATIQPTPYWCVEDLISHRDNAEPAFIKVLTEASQRLVMEMSDQ---------------IQMPVDDMVTLACRINSNAHGLGDNHSRNTDV--------------ALGLFPLGALFFNHGCNPNTAFVGVSNGQLA---------------------FRTIRPVNKDEELVVSYID-LYSDRDERRLELLQSKHFWCKCKRC--ASPMEKSVDRFLQGVVCTKCKEDVYII 357          
BLAST of EWM24905.1 vs. NCBI_GenBank
Match: gi|1043304218|gb|OBZ88940.1| (N-lysine methyltransferase SMYD2 [Choanephora cucurbitarum])

HSP 1 Score: 79.337 bits (194), Expect = 1.230e-11
Identity = 108/450 (24.00%), Postives = 153/450 (34.00%), Query Frame = 0
Query:   77 PPLSSISSARAPFSASPPGLLTKTDWKGKGRYTIIAPGASVLEGTKILSSPCFTAVIASKVLDKWCTVCLRRLPAKARRLGCKSCNMAYYCSEACLDRDGSLHDLICLFLGRVRAHARRLAANQRLPKQPETSPQPRQSSPQFSFFDTDTLRLAVQVIGSLDHSYHFLRSRKHTSGSIPPDHSREP-PEPMSKIMDLSVQEDAEYGTIWKEALELARGLGAPMTEAEREACGGVGRRGENYLEGNAEFFAGLLVRLRVNCHPFRAYKPRNSKLQGSDDRHHEAGGAPALGLFLSLASTVNHSCRPVASFNALIRPQPAESRNSQGESGQRWWYQDVVAELRAVRAMTAGEEVTYSYLEHLHFSRKERQDFLWQAFRFHCQCPRCEEEGGKEGGSEGGTQGWACFTCGGRVEAIREDTGRQRTRGQ-----EGSKQSCGEVARVEGNDWIQ 520
            PP S ++S      AS P  L  T  K KGR+   A   ++  G  +        ++ S+ LDK C VCL  L  K   + C  C  A+YCS+ CL++D  +H L C  L +  A          + K  +  P              D LRL              L +R+    S   +++    P P   + DL    +       K   E +  L   M E                +  + E    L  R+  N H       RN+ +              ALGLF   A   NH C P  +F  L   Q A                      R +R +   EE+  SY++ L   R ER+  L  +  F C+C RC     K    +   QG  C  C   V  I        T+G      E    SC + +     D +Q
Sbjct:   39 PPPSPLNSFYEQALASYPVKLNNT--KAKGRHA--AAAENIEAGVTLCQEQATAFIVRSEFLDKQCHVCLADLQQK---MMCSDCQKAFYCSKECLEKDNDVHVLACSSLKQAEA----------IGKATDVDP--------------DLLRLMA-----------LLMTRRFLDASHKEENNLHVGPTPYWCVEDLISHRENANTAFTKVLTEASTRLLMEMPEK---------------IHMSVEDMVTLACRINSNAHGLGDNHSRNTDV--------------ALGLFPLGALFFNHGCNPNTAFVGLPNGQLA---------------------FRTIRPVNKDEELVVSYID-LCSDRDERRQDLLNSKHFWCKCKRCSSSMDK--SVDRFLQGIICKECQRDVYVIPPTPVEHLTKGNRNLYLEKGTFSCAQCSHEVSADKLQ 393          
BLAST of EWM24905.1 vs. NCBI_GenBank
Match: gi|729697127|emb|CEJ05325.1| (hypothetical protein RMCBS344292_19268 [Rhizopus microsporus] >gi|729714011|emb|CEI89687.1| hypothetical protein RMCBS344292_04036 [Rhizopus microsporus])

HSP 1 Score: 65.0846 bits (157), Expect = 3.259e-7
Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = 0
Query:  101 DWKGKGRYTIIAPGASVLEGTKILSSPCFTAVIASKVLDKWCTVCLRRLPAKARRLGCKSCNMAYYCSEACLDRDGSLHDLICLFLGRVRAHA 193
            + K KGR+ + A    + EG  +        V+ S  +D+ C  CL  LP+   R  C  C ++YYCS+ CLD+D +LH+LIC   G+++A A
Sbjct:   58 NTKAKGRHAVAAK--ELPEGVTVSLETATAFVVRSDFIDQNCHTCLADLPSDKVR--CTHCPLSYYCSKTCLDKDRALHELICSTFGQLKAIA 146          
The following BLAST results are available for this feature:
BLAST of EWM24905.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585106532|gb|EWM24905.1|0.000e+0100.00set and mynd domain containing 2 [Nannochloropsis ... [more]
gi|1183328268|gb|ORX58018.1|5.734e-1525.37SET domain-containing protein [Hesseltinella vesic... [more]
gi|758355564|dbj|GAN02388.1|5.925e-1323.90SET domain-containing protein [Mucor ambiguus][more]
gi|1043304218|gb|OBZ88940.1|1.230e-1124.00N-lysine methyltransferase SMYD2 [Choanephora cucu... [more]
gi|729697127|emb|CEJ05325.1|3.259e-736.56hypothetical protein RMCBS344292_19268 [Rhizopus m... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5788rna5788Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications