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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100116g15.9031.mrna |
| Orig protein id | gnl|cribi|Naga_100116g15.9031 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:837804..839124 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5785 ID=rna5785|Name=rna5785|organism=Nannochloropsis gaditana|type=mRNA|length=1746bp
ACACCGCGGGGTCGCACAAGACTGCGGTGATATGCCGGGTGATAGCCTCC
CCCCGCGCCCAAAACCACCGGGGAGACCTCAGACACCCATCCGATTAATA
CACTGACAGGCAGCGGCCAGCGCCTCGCTCAAGTCACCAAATAACAGCGA
AGATGCCCGCCAAATTGGTTTCAACCCCCTCCTGACAACATTCGCGCACT
TTGGACCGCGTAGGACGTGGACGTGGGGATGGAATGGACAACGCAATGGC
TGAGAACGGGATGTAATGGAATGATTCGCCCTCTCGGCATGTCCCCACGG
GGTCGGGCGGAGAATAACGTGACCTTCAGCAGCAGTCAAATCAGCAGCTC
CTTGAGCAGTACCCACGACACGAAGCGGTACTATGTTTTGTTAGGTCTTG
CCCTTGCAGGGCTCTGTCTCACGTTGCTGCTTGCATTGCCCCATATGGCC
TGGCTCCGGGTCCGACCCCCCTCGAAGATAAGAAAGTTCTACTTTGCGGC
CTCTCTCCTCCCCGTAGTCTTTGCCGTGTCGGCGTCGATCACGTGCTTGG
CCCCCTGGACGAATGAGTACTGGGGTCTCCTTCAGCATCTGACAGAGGCC
TGGGCCTTGCACAGTCTGAACCAGCTCATCGTCGAACGCTTGGGCGGGAA
GACCTCTGCCTTGGCCAAACTTCAAGCCAGAGGCCGTCAGCAATGGCTGC
GTGCTCCTCCTCTCTGCTGCTGGTGTTACTTCCTACCGTCAACGTCTTTC
ACCGAACACACCTTACGCTCGGTTTTAACTCTTACCCGGCAGTTCATCTA
CGCCGCCCCTCTCCTTTCTCTCCTCAATATCCTCCTTTCCTTCACGCGGG
TCCCCACAACGCCGCCGCCCTTGCTGTGGCATGTCCTCCGCCTCCTTCTC
CTCCTTTCCTCCCTCCTCGCCCTCTGGGGCCTCTTTATTCTTTACAAAGC
CTCCCACGACGACCTCTCGCGCCATCATCAGATCACGCTCAAATTTCTCT
CCATCAAGCTTCTCATCATCGTGGGGATCGTGCAAGAATACCTCTTTGCG
GAGCTGATGGATGACAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGAGCTT
GGCTGTCCTGGTCCCGAATGCACTTCTCGCCTCGGAGTCTCCTTTTTTGA
CCCTGTTGATCCTATGGGCTTTTCCATTACGGGAGCTCGATCCCTCGTTC
GGCGGGGAGGCGCGACGGAGCCTGTCCTCCCTGTCACCGGGGGGGGGAAG
AGGTGATGGGGAAGGAGGGGACAAGCCAGGGGTTATCGGCGGAAAAGACC
AACCGCATGCGGCGACGCCTTTGATGGGACCTCGGGCGGGGGGCGAGGGA
GGATGGGGGGCGATGCTGCCGGAGGAGGAAGAGATAGGCGTTGGGGAACT
CTTGTTTGCGAGTCAGGACAGCGACCTGGGAGCCATAACAGGGTCACCGG
GCGGGCTGAGAGTCTAGAGGGGGGGCGGACGGGATGCGAGTGCACGGGGT
ACGAAGGAAATCCGGGCAGGGAGCGGGAGGTGGTGGTCGTGGTGGGGAAA
GGGTGGGGCCGGGCCGAAAGGGGTGCTTGGGTCGATTGTGCGGGTATCGG
TGGAAAGTGTCTGGAGTCGCGCCGGCGGGAGCGGGGTCGGTCGGCGGCGA
TGTGAAAAGGGGGAAGGGGTGCAAGGATGGACGAGCACTCGAATTGTAAC
ATTAGTGCGTAGCGGAAAGGAAACTTTGTACAGAAGGCCACGACGC back to topprotein sequence of rna5785 >rna5785-protein ID=rna5785-protein|Name=rna5785|organism=Nannochloropsis gaditana|type=polypeptide|length=392bp
MTDFFLASFEKVREQGGLDLGKTLSALRTLSLQAECFNLELAHTLVNPLT
TQLGLPPAEWEEVMRREEAVEVPETLEDLGVKLEGDVAFGRIPRRLSALD
DRVSAVACTVSLVGGACRVLVNDRFKDTFWSASEILSRLSKEVAGPPFLF
AALVAVEDRLDFLEAMTAYVFGPPTQVELSQIVKVRDAGEQTFLAMIRLR
TATLAGGAYLATMLSISPAPSSKYIRGGNKEGAGEEGLTWLGLNQMEAKA
RVRPPSAVLAPGQGLGKDTNNHNNSNMKSNHPWKEKSKSRCISHSPASAW
HLQRCHHAKAEVAGGPWGSMAAKCIMERGECRDDAGTIFSLFYTPMPVRW
VDNANISSGSGLLDQHMCAATNLDGIFGCGLEIDYTGMGSGT back to topmRNA from alignment at CM002466.1:837804..839124+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5785 ID=rna5785|Name=rna5785|organism=Nannochloropsis gaditana|type=mRNA|length=1321bp|location=Sequence derived from alignment at CM002466.1:837804..839124+ (Nannochloropsis gaditana)
ATGACGGACTTTTTTTTGGCGTCTTTTGAAAAAGTCCGCGAACAAGGCGG
CTTGGACCTGGGGAAGACGTTGAGTGCCCTCCGGACTTTGTCGCTGCAGG
CGGAGTGTTTCAATTTGGAGCTCGCGCACACGCTCGTCAACCCCTTGACC
ACCCAGCTGGGCCTTCCCCCGGccgagtgggaggaggtgatgaggaggga
agaggccgtggaggtgcCGGAGACCTTGGAGGACCTGGGGGTGAagctgg
agggggacgtggcGTTCGGGAGGATCCCTCGACGGCTGTCGGCGTTGGAC
GATCGAGTTTCGGCGGTGGCGTGCACCGTGTCGCTCGTTGGAGGGGCCTG
CCGAGTCCTGGTGAATGACCGGTTCAAGGACACCTTTTGGAGCGCCTCAG
AGATCCTTTCGCGCCTGTCGAAGGAAGTCGCGgggccccccttcctcttt
gcggctttggtggcggtggaggatcGTTTGGACTTCTTGGAGGCGATGAC
GGCCTACGTCTTCGGACCCCCCACCCAGGTAGAGCTCTCCCAAATAGTCA
AGGTccgggacgcgggggagcAAACCTTCCTGGCCATGATCCGCCTCCGC
ACCGCCACCTTGGCGGGAGGAGCGTATTTGGCGACCATGCTTTCTATTTC
CCCCGCGCCGTCTTCCAAATACATCCGGGGGGGGAACAAGGAAGgtgcag
gggaggaaggactcACGTGGTTGGGATTGAATCAGATGGAGGCCAAAGCC
CGCGtgcgcccgccctcggccgTTTTGGCGCCAGGACAGGGCCTTGGGAA
GGAGTACGAGGCCTGCAATATCCAAACGGTCCGAGTGCAGGAATTcctcc
ggggggagggcgggaaaggggggtggaggggagggaaagggggggaggga
ggagaggggggcgcggCCGCAGTGCCGTCTATGCCATCCTTTCAGCAcca
acaaccacaacaacagcaacatgAAGAGCAACCACCcctggaaggagaag
agcaagagcagaTGCATTTCTCACTCTCCGGCTTCGGCGTGGCACCTGCA
GAGATGTCATCACGCGAAAgccgaggtggcgggggggccgTGGGGCAGTA
TGGCAGCAAAGTGTAtcatggagagaggggagtgTCGGGATGATGCTGGG
ACAATCTTTAGTTTGTTCTATACACCAATGCCGGTGCGATGGGTTGATAA
CGCCAACATATCATCAGGCTCAGGCCTTCTTGATCAGCATATGTGTGCTG
CGACGAATTTGGATGGCATATTTGGTTGCGGTCTTGAGATTGATTACACG
GGTATGGGTTCAGGGACgtga back to topCoding sequence (CDS) from alignment at CM002466.1:837804..839124+ >rna5785 ID=rna5785|Name=rna5785|organism=Nannochloropsis gaditana|type=CDS|length=2358bp|location=Sequence derived from alignment at CM002466.1:837804..839124+ (Nannochloropsis gaditana)
ATGACGGACTTTTTTTTGGCGTCTTTTGAAAAAGTCCGCGAACAAGGCGG
CTTGGACCTGGGGAAGACGTTGAGTGCCCTCCGGACTTTGTCGCTGCAGG
CGGAGTGTTTCAATTTGGAGCTCGCGCACACGCTCGTCAACCCCTTGACC
ACCCAGCTGGGCCTTCCCCCGGccgagtgggaggaggtgatgaggaggga
agaggccgtggaggtgcCGGAGACCTTGGAGGACCTGGGGGTGAagctgg
agggggacgtggcGTTCGGGAGGATCCCTCGACGGCTGTCGGCGTTGGAC
GATCGAGTTTCGGCGGTGGCGTGCACCGTGTCGCTCGTTGGAGGGGCCTG
CCGAGTCCTGGTGAATGACCGGTTCAAGGACACCTTTTGGAGCGCCTCAG
AGATCCTTTCGCGCCTGTCGAAGGAAGTCGCGgggccccccttcctcttt
gcggctttggtggcggtggaggatcGTTTGGACTTCTTGGAGGCGATGAC
GGCCTACGTCTTCGGACCCCCCACCCAGGTAGAGCTCTCCCAAATAGTCA
AGGTccgggacgcgggggagcAAACCTTCCTGGCCATGATCCGCCTCCGC
ACCGCCACCTTGGCGGGAGGAGCGTATTTGGCGACCATGCTTTCTATTTC
CCCCGCGCCGTCTTCCAAATACATCCGGGGGGGGAACAAGGAAGgtgcag
gggaggaaggactcACGTGGTTGGGATTGAATCAGATGGAGGCCAAAGCC
CGCGtgcgcccgccctcggccgTTTTGGCGCCAGGACAGGGCCTTGGGAA
GGACAccaacaaccacaacaacagcaacatgAAGAGCAACCACCcctgga
aggagaagagcaagagcagaTGCATTTCTCACTCTCCGGCTTCGGCGTGG
CACCTGCAGAGATGTCATCACGCGAAAgccgaggtggcgggggggccgTG
GGGCAGTATGGCAGCAAAGTGTAtcatggagagaggggagtgTCGGGATG
ATGCTGGGACAATCTTTAGTTTGTTCTATACACCAATGCCGGTGCGATGG
GTTGATAACGCCAACATATCATCAGGCTCAGGCCTTCTTGATCAGCATAT
GTGTGCTGCGACGAATTTGGATGGCATATTTGGTTGCGGTCTTGAGATTG
ATTACACGGGTATGGGTTCAGGGACgtgaATGACGGACTTTTTTTTGGCG
TCTTTTGAAAAAGTCCGCGAACAAGGCGGCTTGGACCTGGGGAAGACGTT
GAGTGCCCTCCGGACTTTGTCGCTGCAGGCGGAGTGTTTCAATTTGGAGC
TCGCGCACACGCTCGTCAACCCCTTGACCACCCAGCTGGGCCTTCCCCCG
GccgagtgggaggaggtgatgaggagggaagaggccgtggaggtgcCGGA
GACCTTGGAGGACCTGGGGGTGAagctggagggggacgtggcGTTCGGGA
GGATCCCTCGACGGCTGTCGGCGTTGGACGATCGAGTTTCGGCGGTGGCG
TGCACCGTGTCGCTCGTTGGAGGGGCCTGCCGAGTCCTGGTGAATGACCG
GTTCAAGGACACCTTTTGGAGCGCCTCAGAGATCCTTTCGCGCCTGTCGA
AGGAAGTCGCGgggccccccttcctctttgcggctttggtggcggtggag
gatcGTTTGGACTTCTTGGAGGCGATGACGGCCTACGTCTTCGGACCCCC
CACCCAGGTAGAGCTCTCCCAAATAGTCAAGGTccgggacgcgggggagc
AAACCTTCCTGGCCATGATCCGCCTCCGCACCGCCACCTTGGCGGGAGGA
GCGTATTTGGCGACCATGCTTTCTATTTCCCCCGCGCCGTCTTCCAAATA
CATCCGGGGGGGGAACAAGGAAGgtgcaggggaggaaggactcACGTGGT
TGGGATTGAATCAGATGGAGGCCAAAGCCCGCGtgcgcccgccctcggcc
gTTTTGGCGCCAGGACAGGGCCTTGGGAAGGACAccaacaaccacaacaa
cagcaacatgAAGAGCAACCACCcctggaaggagaagagcaagagcagaT
GCATTTCTCACTCTCCGGCTTCGGCGTGGCACCTGCAGAGATGTCATCAC
GCGAAAgccgaggtggcgggggggccgTGGGGCAGTATGGCAGCAAAGTG
TAtcatggagagaggggagtgTCGGGATGATGCTGGGACAATCTTTAGTT
TGTTCTATACACCAATGCCGGTGCGATGGGTTGATAACGCCAACATATCA
TCAGGCTCAGGCCTTCTTGATCAGCATATGTGTGCTGCGACGAATTTGGA
TGGCATATTTGGTTGCGGTCTTGAGATTGATTACACGGGTATGGGTTCAG
GGACgtga back to top
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