EWM24903.1, cds5770 (CDS) Nannochloropsis gaditana

Overview
NameEWM24903.1
Unique Namecds5770
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:837804..838606 +
Alignment locationCM002466.1:838749..839124 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24903.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100116g15.9031.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:837804..838606 +
CM002466.1supercontigCM002466.1:838749..839124 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24903.1 vs. NCBI_GenBank
Match: gi|585106530|gb|EWM24903.1| (hypothetical protein Naga_100116g15 [Nannochloropsis gaditana])

HSP 1 Score: 809.29 bits (2089), Expect = 0.000e+0
Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 0 
Query:    1 MTDFFLASFEKVREQGGLDLGKTLSALRTLSLQAECFNLELAHTLVNPLTTQLGLPPAEWEEVMRREEAVEVPETLEDLGVKLEGDVAFGRIPRRLSALDDRVSAVACTVSLVGGACRVLVNDRFKDTFWSASEILSRLSKEVAGPPFLFAALVAVEDRLDFLEAMTAYVFGPPTQVELSQIVKVRDAGEQTFLAMIRLRTATLAGGAYLATMLSISPAPSSKYIRGGNKEGAGEEGLTWLGLNQMEAKARVRPPSAVLAPGQGLGKDTNNHNNSNMKSNHPWKEKSKSRCISHSPASAWHLQRCHHAKAEVAGGPWGSMAAKCIMERGECRDDAGTIFSLFYTPMPVRWVDNANISSGSGLLDQHMCAATNLDGIFGCGLEIDYTGMGSGT 392
            MTDFFLASFEKVREQGGLDLGKTLSALRTLSLQAECFNLELAHTLVNPLTTQLGLPPAEWEEVMRREEAVEVPETLEDLGVKLEGDVAFGRIPRRLSALDDRVSAVACTVSLVGGACRVLVNDRFKDTFWSASEILSRLSKEVAGPPFLFAALVAVEDRLDFLEAMTAYVFGPPTQVELSQIVKVRDAGEQTFLAMIRLRTATLAGGAYLATMLSISPAPSSKYIRGGNKEGAGEEGLTWLGLNQMEAKARVRPPSAVLAPGQGLGKDTNNHNNSNMKSNHPWKEKSKSRCISHSPASAWHLQRCHHAKAEVAGGPWGSMAAKCIMERGECRDDAGTIFSLFYTPMPVRWVDNANISSGSGLLDQHMCAATNLDGIFGCGLEIDYTGMGSGT
Sbjct:    1 MTDFFLASFEKVREQGGLDLGKTLSALRTLSLQAECFNLELAHTLVNPLTTQLGLPPAEWEEVMRREEAVEVPETLEDLGVKLEGDVAFGRIPRRLSALDDRVSAVACTVSLVGGACRVLVNDRFKDTFWSASEILSRLSKEVAGPPFLFAALVAVEDRLDFLEAMTAYVFGPPTQVELSQIVKVRDAGEQTFLAMIRLRTATLAGGAYLATMLSISPAPSSKYIRGGNKEGAGEEGLTWLGLNQMEAKARVRPPSAVLAPGQGLGKDTNNHNNSNMKSNHPWKEKSKSRCISHSPASAWHLQRCHHAKAEVAGGPWGSMAAKCIMERGECRDDAGTIFSLFYTPMPVRWVDNANISSGSGLLDQHMCAATNLDGIFGCGLEIDYTGMGSGT 392
[Close]
BLAST of EWM24903.1 vs. NCBI_GenBank
Match: gi|585109256|gb|EWM27081.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 108.227 bits (269), Expect = 1.192e-22
Identity = 55/131 (41.98%), Postives = 84/131 (64.12%), Query Frame = 0 
Query:   96 LSALDDRVSAVACTVSLVGGACRVLVNDRFKDTFWSASEILSRLSKEVAGPPFLFAALVAVEDRLDFLEAMTAYVFGPPTQV-ELSQIVKVRDAGEQTFLAMIRLRTATLAGGAYLATMLSISPAPSSKYI 225
            +++LDD VSAV C V   GG  +V  ND+FK TF+S+ ++  R   E   P +++A ++A EDR +F++++T   FG  T + +++ IVKV D     FLA++RLR  TL  G Y A +L++ PAP SKY+
Sbjct:  226 IASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDYGADILTVEPAPMSKYV 356
The following BLAST results are available for this feature:
BLAST of EWM24903.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106530|gb|EWM24903.1|0.000e+0100.00hypothetical protein Naga_100116g15 [Nannochlorops... [more]
gi|585109256|gb|EWM27081.1|1.192e-2241.98Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5785rna5785Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications