rna5784, rna5784 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5784
Unique Name	rna5784
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1125
Alignment location	CM002466.1:834666..836502 -

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Properties


Property Name	Value
Product	Organic solute transporter Ost-alpha
Orig transcript id	gnl\|cribi\|Naga_100116g16.9020.mrna
Orig protein id	gnl\|cribi\|Naga_100116g16.9020
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:834666..836502 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100116g16	gene5587	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5784	rna5784-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24892.1	cds5769	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:834666..836502-
coding sequence from alignment at CM002466.1:834666..836502-

mRNA sequence

>rna5784 ID=rna5784|Name=rna5784|organism=Nannochloropsis gaditana|type=mRNA|length=1125bp
ATGTCTTTTCTCGGTGTTCCAAAGTGCACACCCATGAAAAATCATAACAC
ACAGCTGTTGATTCTTTCTAACCCTTTTTTGTTTTTAAAACCGCATACAT
ACCCCATAGCGTGGGTAGGAATTGCAGCTACTATGGGCAGAGGTGAACCT
CCCCCCTCCTTCAGCCTCCACCTAGCGCTTGTTGCCGTCGCATTTTTGCA
GACCTTTTCGCCAATCAACGCCTTTTGCCAAACATTAACGCGTCAAAAAT
ATGTTCTACATCGTGCTATCCTAATGCACGCAAGCGTTGTCGAGTGCGTA
GAGGACGCCGAAGCCTATATGGCCGCGTACTTGTATCCTGACAGGGATGC
AGAGGCTCGCAAATCACTGGCATTTCAGGCTCAGGACACATTCTTCCTCG
AGCATGAAAAACATGCTGCTAAAGACTTGGTTCTGACCAAAAAATATACT
ACCTACGGCGAATTCCCTTTGGCCAGTCTGCATGCCATTTTGCAAACCCT
AGATTTGGGCCCAAAAGATGTCTTTTTGGACCTCGGGTCGGGCTCCGGGC
GTTTGGTTTTGGGCACTGCACTACTCTTTCCTTACATTAAAGCAAGTGTA
GGGATAGAGGTGGTACCAGAAATGCATGCCATCGCAACTGAAGCCGCTCG
CAGGGCTGTCGGGATCGGGGATCTACCCAAAATGAGTCCGTTCCATTTTG
TGCAGGGCAATGCAGAAACAGGTGAGTACGCGACAAAGGAGCAAGTGAAT
GACGGAGAAGAGATGAGAAAGAATGAAGAGGGTGCTTATAAAATGCATCC
CCTGCGAGAAGCCACTGTCATCTTCATGTATTGCACTACCTGGCGGTCCC
AGGACGGTCTGTACCTCGCCCAACCGTTACAAACGTCCCTTCTTAAGAAC
GTGCGTAGCGACGTGACCATCATCACAACTGATAAATGCTTCGCAGATGG
CTGGGAGGGAGTTGAGAAGGGAGGGGAGGAGAGTGAGAAGGAGGGGAGGC
GGGGCTTCAGGGTTGTGAGGCGGATGGCGGTTCCGAACCCAGAGGTGTGG
GAGTCAATAGCCCATATTCATGAAGTAATGGATTCGAAGGATGGAGGAAA
TGGGACTGAAAGCAATGAAAGATAG

protein sequence of rna5784

>rna5784-protein ID=rna5784-protein|Name=rna5784|organism=Nannochloropsis gaditana|type=polypeptide|length=412bp
MEWTTQWLRTGCNGMIRPLGMSPRGRAENNVTFSSSQISSSLSSTHDTKR
YYVLLGLALAGLCLTLLLALPHMAWLRVRPPSKIRKFYFAASLLPVVFAV
SASITCLAPWTNEYWGLLQHLTEAWALHSLNQLIVERLGGKTSALAKLQA
RGRQQWLRAPPLCCWCYFLPSTSFTEHTLRSVLTLTRQFIYAAPLLSLLN
ILLSFTRVPTTPPPLLWHVLRLLLLLSSLLALWGLFILYKASHDDLSRHH
QITLKFLSIKLLIIVGIVQEYLFAELMDDREGGREGGKESLAVLVPNALL
ASESPFLTLLILWAFPLRELDPSFGGEARRSLSSLSPGGGRGDGEGGDKP
GVIGGKDQPHAATPLMGPRAGGEGGWGAMLPEEEEIGVGELLFASQDSDL
GAITGSPGGLRV

mRNA from alignment at CM002466.1:834666..836502-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5784 ID=rna5784|Name=rna5784|organism=Nannochloropsis gaditana|type=mRNA|length=1837bp|location=Sequence derived from alignment at CM002466.1:834666..836502- (Nannochloropsis gaditana)
ACACCGCGGGGTCGCACAAGACTGCGGTGATATGCCGGGTGATAGCCTCC
CCCCGCGCCCAAAACCACCGGGGAGACCTCAGACACCCATCCGATTAATA
CACTGACAGGCAGCGGCCAGCGCCTCGCTCAAGTCACCAAATAACAGCGA
AGATGCCCGCCAAATTGGTTTCAACCCCCTCCTGACAACATTCGCGCACT
TTGGACCGCGTAGGACGTGGACGTGGGGATGGAATGGACAACGCAATGGC
TGAGAACGGGATGTAATGGAATGATTCGCCCTCTCGGCATGTCCCCACGG
GGTCGGGCGGAGAATAACGTGACCTTCAGCAGCAGTCAAATCAGCAGCTC
CTTGAGCAGTACCCACGACACGAAGCGGTACTATGTTTTGTTAGGTCTTG
CCCTTGCAGGGCTCTGTCTCACGTTGCTGCTTGCATTGCCCCATATGGCC
TGGCTCCGGGTCCGACCCCCCTCGAAGATAAGAAAGTTCTACTTTGCGGC
CTCTCTCCTCCCCGTAGTCTTTGCCGTGTCGGCGTCGATCACGTGCTTGG
CCCCCTGGACGAATGAGTACTGGGGTCTCCTTCAGCATCTGACAGAGGCC
TGGGCCTTGCACAGTCTGAACCAGGTGAGCAAAAGTGCAATAGCAATGGT
GGGGAGGTTGGGGAGCTAAATGCTTGGCTTTCGTCTCGAACCTCACCTTC
CCCTTCGTCCTCCAGCTCATCGTCGAACGCTTGGGCGGGAAGACCTCTGC
CTTGGCCAAACTTCAAGCCAGAGGCCGTCAGCAATGGCTGCGTGCTCCTC
CTCTCTGCTGCTGGTGTTACTTCCTACCGTCAACGTCTTTCACCGAACAC
ACCTTACGCTCGGTTTTAACTCTTACCCGGCAGTTCATCTACGCCGCCCC
TCTCCTTTCTCTCCTCAATATCCTCCTTTCCTTCACGCGGGTCCCCACAA
CGCCGCCGCCCTTGCTGTGGCATGTCCTCCGCCTCCTTCTCCTCCTTTCC
TCCCTCCTCGCCCTCTGGGGCCTCTTTATTCTTTACAAAGCCTCCCACGA
CGACCTCTCGCGCCATCATCAGATCACGCTCAAATTTCTCTCCATCAAGC
TTCTCATCATCGTGGGGATCGTGCAAGAATACCTCTTTGCGGAGCTGATG
GATGACAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGAGCTTGGCTGTCCT
GGTCCCGAATGCACTTCTCGCCTCGGAGTCTCCTTTTTTGACCCTGTTGA
TCCTATGGGCTTTTCCATTACGGGAGCTCGATCCCTCGTTCGGCGGGGAG
GCGCGACGGAGCCTGTCCTCCCTGTCACCGGGGGGGGGAAGAGGTGATGG
GGAAGGAGGGGACAAGCCAGGGGTTATCGGCGGAAAAGACCAACCGCATG
CGGCGACGCCTTTGATGGGACCTCGGGCGGGGGGCGAGGGAGGATGGGGG
GCGATGCTGCCGGAGGAGGAAGAGATAGGCGTTGGGGAACTCTTGTTTGC
GAGTCAGGACAGCGACCTGGGAGCCATAACAGGGTCACCGGGCGGGCTGA
GAGTCTAGAGGGGGGGCGGACGGGATGCGAGTGCACGGGGTACGAAGGAA
ATCCGGGCAGGGAGCGGGAGGTGGTGGTCGTGGTGGGGAAAGGGTGGGGC
CGGGCCGAAAGGGGTGCTTGGGTCGATTGTGCGGGTATCGGTGGAAAGTG
TCTGGAGTCGCGCCGGCGGGAGCGGGGTCGGTCGGCGGCGATGTGAAAAG
GGGGAAGGGGTGCAAGGATGGACGAGCACTCGAATTGTAACATTAGTGCG
TAGCGGAAAGGAAACTTTGTACAGAAGGCCACGACGC

Coding sequence (CDS) from alignment at CM002466.1:834666..836502-

>rna5784 ID=rna5784|Name=rna5784|organism=Nannochloropsis gaditana|type=CDS|length=2478bp|location=Sequence derived from alignment at CM002466.1:834666..836502- (Nannochloropsis gaditana)
CTCATCGTCGAACGCTTGGGCGGGAAGACCTCTGCCTTGGCCAAACTTCA
AGCCAGAGGCCGTCAGCAATGGCTGCGTGCTCCTCCTCTCTGCTGCTGGT
GTTACTTCCTACCGTCAACGTCTTTCACCGAACACACCTTACGCTCGGTT
TTAACTCTTACCCGGCAGTTCATCTACGCCGCCCCTCTCCTTTCTCTCCT
CAATATCCTCCTTTCCTTCACGCGGGTCCCCACAACGCCGCCGCCCTTGC
TGTGGCATGTCCTCCGCCTCCTTCTCCTCCTTTCCTCCCTCCTCGCCCTC
TGGGGCCTCTTTATTCTTTACAAAGCCTCCCACGACGACCTCTCGCGCCA
TCATCAGATCACGCTCAAATTTCTCTCCATCAAGCTTCTCATCATCGTGG
GGATCGTGCAAGAATACCTCTTTGCGGAGCTGATGGATGACAGGGAGGGA
GGGAGGGAGGGAGGGAAGGAGAGCTTGGCTGTCCTGGTCCCGAATGCACT
TCTCGCCTCGGAGTCTCCTTTTTTGACCCTGTTGATCCTATGGGCTTTTC
CATTACGGGAGCTCGATCCCTCGTTCGGCGGGGAGGCGCGACGGAGCCTG
TCCTCCCTGTCACCGGGGGGGGGAAGAGGTGATGGGGAAGGAGGGGACAA
GCCAGGGGTTATCGGCGGAAAAGACCAACCGCATGCGGCGACGCCTTTGA
TGGGACCTCGGGCGGGGGGCGAGGGAGGATGGGGGGCGATGCTGCCGGAG
GAGGAAGAGATAGGCGTTGGGGAACTCTTGTTTGCGAGTCAGGACAGCGA
CCTGGGAGCCATAACAGGGTCACCGGGCGGGCTGAGAGTCTAGATGGAAT
GGACAACGCAATGGCTGAGAACGGGATGTAATGGAATGATTCGCCCTCTC
GGCATGTCCCCACGGGGTCGGGCGGAGAATAACGTGACCTTCAGCAGCAG
TCAAATCAGCAGCTCCTTGAGCAGTACCCACGACACGAAGCGGTACTATG
TTTTGTTAGGTCTTGCCCTTGCAGGGCTCTGTCTCACGTTGCTGCTTGCA
TTGCCCCATATGGCCTGGCTCCGGGTCCGACCCCCCTCGAAGATAAGAAA
GTTCTACTTTGCGGCCTCTCTCCTCCCCGTAGTCTTTGCCGTGTCGGCGT
CGATCACGTGCTTGGCCCCCTGGACGAATGAGTACTGGGGTCTCCTTCAG
CATCTGACAGAGGCCTGGGCCTTGCACAGTCTGAACCAGCTCATCGTCGA
ACGCTTGGGCGGGAAGACCTCTGCCTTGGCCAAACTTCAAGCCAGAGGCC
GTCAGCAATGGCTGCGTGCTCCTCCTCTCTGCTGCTGGTGTTACTTCCTA
CCGTCAACGTCTTTCACCGAACACACCTTACGCTCGGTTTTAACTCTTAC
CCGGCAGTTCATCTACGCCGCCCCTCTCCTTTCTCTCCTCAATATCCTCC
TTTCCTTCACGCGGGTCCCCACAACGCCGCCGCCCTTGCTGTGGCATGTC
CTCCGCCTCCTTCTCCTCCTTTCCTCCCTCCTCGCCCTCTGGGGCCTCTT
TATTCTTTACAAAGCCTCCCACGACGACCTCTCGCGCCATCATCAGATCA
CGCTCAAATTTCTCTCCATCAAGCTTCTCATCATCGTGGGGATCGTGCAA
GAATACCTCTTTGCGGAGCTGATGGATGACAGGGAGGGAGGGAGGGAGGG
AGGGAAGGAGAGCTTGGCTGTCCTGGTCCCGAATGCACTTCTCGCCTCGG
AGTCTCCTTTTTTGACCCTGTTGATCCTATGGGCTTTTCCATTACGGGAG
CTCGATCCCTCGTTCGGCGGGGAGGCGCGACGGAGCCTGTCCTCCCTGTC
ACCGGGGGGGGGAAGAGGTGATGGGGAAGGAGGGGACAAGCCAGGGGTTA
TCGGCGGAAAAGACCAACCGCATGCGGCGACGCCTTTGATGGGACCTCGG
GCGGGGGGCGAGGGAGGATGGGGGGCGATGCTGCCGGAGGAGGAAGAGAT
AGGCGTTGGGGAACTCTTGTTTGCGAGTCAGGACAGCGACCTGGGAGCCA
TAACAGGGTCACCGGGCGGGCTGAGAGTCTAGATGGAATGGACAACGCAA
TGGCTGAGAACGGGATGTAATGGAATGATTCGCCCTCTCGGCATGTCCCC
ACGGGGTCGGGCGGAGAATAACGTGACCTTCAGCAGCAGTCAAATCAGCA
GCTCCTTGAGCAGTACCCACGACACGAAGCGGTACTATGTTTTGTTAGGT
CTTGCCCTTGCAGGGCTCTGTCTCACGTTGCTGCTTGCATTGCCCCATAT
GGCCTGGCTCCGGGTCCGACCCCCCTCGAAGATAAGAAAGTTCTACTTTG
CGGCCTCTCTCCTCCCCGTAGTCTTTGCCGTGTCGGCGTCGATCACGTGC
TTGGCCCCCTGGACGAATGAGTACTGGGGTCTCCTTCAGCATCTGACAGA
GGCCTGGGCCTTGCACAGTCTGAACCAG

Synonyms

Publications