rna5783, rna5783 (mRNA) Nannochloropsis gaditana

Overview
Namerna5783
Unique Namerna5783
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length759
Alignment locationCM002466.1:833478..834602 +

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Properties
Property NameValue
ProductHistone methylation DOT1
Orig transcript idgnl|cribi|Naga_100116g17.9016.mrna
Orig protein idgnl|cribi|Naga_100116g17.9016
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:833478..834602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100116g17gene5586Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5783rna5783-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24888.1cds5768Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5783 ID=rna5783|Name=rna5783|organism=Nannochloropsis gaditana|type=mRNA|length=759bp
ATGGCAATGAGACGCGTTACAGCCCTTGTTACGGGTGCAGCATCAGGTTT
GGGGAACGCCACTGCTCAGCGTTTTTTACAACAGGGCGCTCGTGTCATCC
TAGCGGATCTGCCAACCAAAAACTCCGCCGCGCTTGCTTCTCTCCAAAGC
CTGGAGGAAGAGGAACGCTCCCGAAGCGTTTTCGCAGGAGTCGATGTACT
GGAAAGTTCTCTGGTCGCAGCTGGAGTCGACTCAGCCCTCTCCAACTGGG
GCCAAAGCGTAAATGTGGTGGTAAACTGCGCAGGTATCGCTGTAGCTCAA
CGCGTGTTGGGCAAGCAGGGGCCCCATTCACTCGAAACGTTTCTGAAGGT
AGGCAGGGAAACGGAGTCAAAGAGAATGCGCAAACTCCCTGCCGACGAGA
ATGGCATCCGAGGTGTGATCATCAATACCGCTAGTATCGCTGCATATGAC
GGACAGATTGGACAGACTGCCTACGCCGCCTCGAAAGCCGCTGTAGCTGG
TCTTACACTTCCTCTAGCTCGTGACTTAGCCCGAGACGGGATCCGCGTCG
TTTCTATCGCCCCTGGATTGTTTCGCACGCCAATGTTAGCGGCTCTTCCT
GAACATGTGCAGACTGAATTGGGTCAGACTGTACCTTTACCGAAGCGTTT
GGGAGACCCCATGGAGTTTGCTATGCTGGCACAGGCCGTAGTGGAAAATC
CGATGATCAATGGGGAAGTGATTCGCTTGGATGGGGCATTGCGCATGCCT
CCTTCCTGA
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protein sequence of rna5783

>rna5783-protein ID=rna5783-protein|Name=rna5783|organism=Nannochloropsis gaditana|type=polypeptide|length=374bp
MSFLGVPKCTPMKNHNTQLLILSNPFLFLKPHTYPIAWVGIAATMGRGEP
PPSFSLHLALVAVAFLQTFSPINAFCQTLTRQKYVLHRAILMHASVVECV
EDAEAYMAAYLYPDRDAEARKSLAFQAQDTFFLEHEKHAAKDLVLTKKYT
TYGEFPLASLHAILQTLDLGPKDVFLDLGSGSGRLVLGTALLFPYIKASV
GIEVVPEMHAIATEAARRAVGIGDLPKMSPFHFVQGNAETGEYATKEQVN
DGEEMRKNEEGAYKMHPLREATVIFMYCTTWRSQDGLYLAQPLQTSLLKN
VRSDVTIITTDKCFADGWEGVEKGGEESEKEGRRGFRVVRRMAVPNPEVW
ESIAHIHEVMDSKDGGNGTESNER
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mRNA from alignment at CM002466.1:833478..834602+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5783 ID=rna5783|Name=rna5783|organism=Nannochloropsis gaditana|type=mRNA|length=1125bp|location=Sequence derived from alignment at CM002466.1:833478..834602+ (Nannochloropsis gaditana)
ATGTCTTTTCTCGGTGTTCCAAAGTGCACACCCATGAAAAATCATAACAC
ACAGCTGTTGATTCTTTCTAACCCTTTTTTGTTTTTAAAACCGCATACAT
ACCCCATAGCGTGGGTAGGAATTGCAGCTACTATGGGCAGAGgtgaacct
cccccctccttcagcctCCACCTAGCGCTTGTTGCCGTCGCATTTTTGCA
GACCTTTTCGCCAATCAACGCCTTTTGCCAAACATTAACGCGTCAAAAAT
ATGTTCTACATCGTGCTATCCTAATGCACGCAAGCGTTGTCGAGTGCGTA
GAGGACGCCGAAGCCTATATGGCCGCGTACTTGTATCCTGACAGGGATGC
AGAGGCTCGCAAATCACTGGCATTTCAGGCTCAGGACACATTCTTCCTCG
AGCATGAAAAACATGCTGCTAAAGACTTGGTTCTGACCAAAAAATATACT
ACCTACGGCGAATTCCCTTTGGCCAGTCTGCATGCCATTTTGCAAACCCT
AGATTTGGGCCCAAAAGATGTCTTTTTGGACCTCGGGTCGGGCTCCGGGC
GTTTGGTTTTGGGCACTGCACTACTCTTTCCTTACATTAAAGCAAGTGTA
GGGATAGAGGTGGTACCAGAAATGCATGCCATCGCAACTGAAGCCGCTCG
CAGGGCTGTCGGGATCGGGGATCTACCCAAAATGAGTCCGTTCCATTTTG
TGCAGGGCAATGCAGAAACAGGTGAGTACGCGACAAAGGAGCAAGTGAAT
GACGGAGAAGAGATGAGAAAGAATGAAGAGGGTGCTTATAAAATGCATCC
CCTGCGAGAAGCCACTGTCATCTTCATGTATTGCACTACCTGGCGGTCCC
AGGACGGTCTGTACCTCGCCCAACCGTTACAAACGTCCCTTCTTAAGAAC
GTGCGTAGCGACGTGACCATCATCACAACTGATAAATGCTTCGCAGATGG
CTGGGAGGGAgttgagaagggaggggaggagagtgagaaggaggggaggc
ggggcttCAGGGTTGTGAGGCGGATGGCGGTTCCGAACCCAGAGGTGTGG
GAGTCAATAGCCCATATTCATGAAGTAATGGATtcgaaggatggaggaaa
tgggaCTGAAAGCAATGAAAGATAG
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Coding sequence (CDS) from alignment at CM002466.1:833478..834602+

>rna5783 ID=rna5783|Name=rna5783|organism=Nannochloropsis gaditana|type=CDS|length=1125bp|location=Sequence derived from alignment at CM002466.1:833478..834602+ (Nannochloropsis gaditana)
ATGTCTTTTCTCGGTGTTCCAAAGTGCACACCCATGAAAAATCATAACAC
ACAGCTGTTGATTCTTTCTAACCCTTTTTTGTTTTTAAAACCGCATACAT
ACCCCATAGCGTGGGTAGGAATTGCAGCTACTATGGGCAGAGgtgaacct
cccccctccttcagcctCCACCTAGCGCTTGTTGCCGTCGCATTTTTGCA
GACCTTTTCGCCAATCAACGCCTTTTGCCAAACATTAACGCGTCAAAAAT
ATGTTCTACATCGTGCTATCCTAATGCACGCAAGCGTTGTCGAGTGCGTA
GAGGACGCCGAAGCCTATATGGCCGCGTACTTGTATCCTGACAGGGATGC
AGAGGCTCGCAAATCACTGGCATTTCAGGCTCAGGACACATTCTTCCTCG
AGCATGAAAAACATGCTGCTAAAGACTTGGTTCTGACCAAAAAATATACT
ACCTACGGCGAATTCCCTTTGGCCAGTCTGCATGCCATTTTGCAAACCCT
AGATTTGGGCCCAAAAGATGTCTTTTTGGACCTCGGGTCGGGCTCCGGGC
GTTTGGTTTTGGGCACTGCACTACTCTTTCCTTACATTAAAGCAAGTGTA
GGGATAGAGGTGGTACCAGAAATGCATGCCATCGCAACTGAAGCCGCTCG
CAGGGCTGTCGGGATCGGGGATCTACCCAAAATGAGTCCGTTCCATTTTG
TGCAGGGCAATGCAGAAACAGGTGAGTACGCGACAAAGGAGCAAGTGAAT
GACGGAGAAGAGATGAGAAAGAATGAAGAGGGTGCTTATAAAATGCATCC
CCTGCGAGAAGCCACTGTCATCTTCATGTATTGCACTACCTGGCGGTCCC
AGGACGGTCTGTACCTCGCCCAACCGTTACAAACGTCCCTTCTTAAGAAC
GTGCGTAGCGACGTGACCATCATCACAACTGATAAATGCTTCGCAGATGG
CTGGGAGGGAgttgagaagggaggggaggagagtgagaaggaggggaggc
ggggcttCAGGGTTGTGAGGCGGATGGCGGTTCCGAACCCAGAGGTGTGG
GAGTCAATAGCCCATATTCATGAAGTAATGGATtcgaaggatggaggaaa
tgggaCTGAAAGCAATGAAAGATAG
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Synonyms
Publications