EWM24888.1, cds5768 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24888.1 vs. NCBI_GenBank
Match: gi|585106515|gb|EWM24888.1| (Histone methylation DOT1 [Nannochloropsis gaditana]) HSP 1 Score: 782.326 bits (2019), Expect = 0.000e+0 Identity = 374/374 (100.00%), Postives = 374/374 (100.00%), Query Frame = 0
Query: 1 MSFLGVPKCTPMKNHNTQLLILSNPFLFLKPHTYPIAWVGIAATMGRGEPPPSFSLHLALVAVAFLQTFSPINAFCQTLTRQKYVLHRAILMHASVVECVEDAEAYMAAYLYPDRDAEARKSLAFQAQDTFFLEHEKHAAKDLVLTKKYTTYGEFPLASLHAILQTLDLGPKDVFLDLGSGSGRLVLGTALLFPYIKASVGIEVVPEMHAIATEAARRAVGIGDLPKMSPFHFVQGNAETGEYATKEQVNDGEEMRKNEEGAYKMHPLREATVIFMYCTTWRSQDGLYLAQPLQTSLLKNVRSDVTIITTDKCFADGWEGVEKGGEESEKEGRRGFRVVRRMAVPNPEVWESIAHIHEVMDSKDGGNGTESNER 374
MSFLGVPKCTPMKNHNTQLLILSNPFLFLKPHTYPIAWVGIAATMGRGEPPPSFSLHLALVAVAFLQTFSPINAFCQTLTRQKYVLHRAILMHASVVECVEDAEAYMAAYLYPDRDAEARKSLAFQAQDTFFLEHEKHAAKDLVLTKKYTTYGEFPLASLHAILQTLDLGPKDVFLDLGSGSGRLVLGTALLFPYIKASVGIEVVPEMHAIATEAARRAVGIGDLPKMSPFHFVQGNAETGEYATKEQVNDGEEMRKNEEGAYKMHPLREATVIFMYCTTWRSQDGLYLAQPLQTSLLKNVRSDVTIITTDKCFADGWEGVEKGGEESEKEGRRGFRVVRRMAVPNPEVWESIAHIHEVMDSKDGGNGTESNER
Sbjct: 1 MSFLGVPKCTPMKNHNTQLLILSNPFLFLKPHTYPIAWVGIAATMGRGEPPPSFSLHLALVAVAFLQTFSPINAFCQTLTRQKYVLHRAILMHASVVECVEDAEAYMAAYLYPDRDAEARKSLAFQAQDTFFLEHEKHAAKDLVLTKKYTTYGEFPLASLHAILQTLDLGPKDVFLDLGSGSGRLVLGTALLFPYIKASVGIEVVPEMHAIATEAARRAVGIGDLPKMSPFHFVQGNAETGEYATKEQVNDGEEMRKNEEGAYKMHPLREATVIFMYCTTWRSQDGLYLAQPLQTSLLKNVRSDVTIITTDKCFADGWEGVEKGGEESEKEGRRGFRVVRRMAVPNPEVWESIAHIHEVMDSKDGGNGTESNER 374
BLAST of EWM24888.1 vs. NCBI_GenBank
Match: gi|551590597|ref|XP_005779663.1| (hypothetical protein EMIHUDRAFT_205230 [Emiliania huxleyi CCMP1516] >gi|485632183|gb|EOD27234.1| hypothetical protein EMIHUDRAFT_205230 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 80.8777 bits (198), Expect = 6.230e-14 Identity = 66/225 (29.33%), Postives = 102/225 (45.33%), Query Frame = 0
Query: 149 YTTYGEFPLASLHAILQTLDLGPK-----DVFLDLGSGSGRLVLGTALLFPYIKASVGIEVVPEMHAIATEAARRAVGIGDLPKMSPFHFVQGNAETGEYATKEQVNDGEEMRKNEEGAYKMHPLREATVIFMYCTTWRSQDGLY--LAQPLQTSLLKNVRSDVTIITTDKCFADGWEGVEKGGEESEKEGRRGFRVVRRMAVPNPEVWESIAHIHEVMDSKDGG 366
+ TYGEF LA A++ P + F+D+GSG GRLVL + ++P + + G+E ++H +A A RA LP+ FV G+A ++ EG PL +ATV+F Y + W S+ G ++ + L R ++ TDK W +E G E F ++ M PN E S+ +I+EV+ S+ GG
Sbjct: 53 HLTYGEFDLAFFGALVDRALARPAGRREPETFVDVGSGCGRLVLAASCVWPELARAAGVETCADLHMMAVRAQARA----SLPRC---DFVHGDA----------------LQAMREGG----PLDDATVVFCYSSAWASEGGALTDFSELVGCCCLPGCR----VVVTDK-----W--LECDGSCGE------FALIDEMEGPNRETGGSVGYIYEVVRSQRGG 233
BLAST of EWM24888.1 vs. NCBI_GenBank
Match: gi|551575709|ref|XP_005773563.1| (hypothetical protein EMIHUDRAFT_241601 [Emiliania huxleyi CCMP1516] >gi|485625202|gb|EOD21134.1| hypothetical protein EMIHUDRAFT_241601 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 71.633 bits (174), Expect = 1.231e-10 Identity = 61/217 (28.11%), Postives = 96/217 (44.24%), Query Frame = 0
Query: 149 YTTYGEFPLASLHAILQTLDLGPK-----DVFLDLGSGSGRLVLGTALLFPYIKASVGIEVVPEMHAIATEAARRAVGIGDLPKMSPFHFVQGNAETGEYATKEQVNDGEEMRKNEEGAYKMHPLREATVIFMYCTTWRSQDGLY--LAQPLQTSLLKNVRSDVTIITTDKCFADGWEGVEKGGEESEKEGRRGFRVVRRMAVPNPEVWESIAHIHE 358
+ TYGEF LA A++ P + F+D+GSG GRLVL + ++P + + G+E ++H +A A RA LP+ FV G+A ++ EG PL +ATV+F Y + W S+ G ++ + L R ++ TDK W +E G E F ++ + PN E S+ +I+E
Sbjct: 53 HLTYGEFDLAFFGALVDRALARPAGRREPETFVDVGSGCGRLVLAASCVWPELARAAGVETCADLHMMAVRAQARA----SLPRCD---FVHGDA----------------LQAMREGG----PLDDATVVFCYSSAWASEGGALTDFSELVGCCCLPGCR----VVVTDK-----W--LECDGSCGE------FALIDEVEGPNRETGGSVGYIYE 225
BLAST of EWM24888.1 vs. NCBI_GenBank
Match: gi|1210518083|dbj|GAX23014.1| (hypothetical protein FisN_15Hh088 [Fistulifera solaris]) HSP 1 Score: 70.8626 bits (172), Expect = 3.127e-10 Identity = 77/278 (27.70%), Postives = 110/278 (39.57%), Query Frame = 0
Query: 102 DAEAYMAAYLYPDRDAEARKSLAFQAQ-------DTFFLEHEKHAAKDLVLTKKYTTYGEFPLASLHAILQ-------TLDLGPKDVF--LDLGSGSGRLVLGTALLFPYIKASVGIEVVPEMHAIATEAARRAVGIGDLPKMSPFHFVQGNAETGEYATKEQVNDGEEMRKNEEGAYKMHPLREATVIFMYCTTWRSQ-----DGLYLAQPLQTSLLKNVRSDVTIITTDKCF-ADGWEGVEKGGEESEKEGRRGFRVVRRMAVPNPEVWESIAHIH 357
+A + L+P +D R +L +AQ D L+ + Y TYGEFPL+SL ++L L KD +DLGSG GRLV L P GIE+ P +H A A RA+ G + PF + +G + + D E G L +A ++F Y T W Q G + L S+ +ITTD+ A+ W ++ R+ VPNPEVW SI ++
Sbjct: 27 EAATVINEILFPQQDYGQRIALGRRAQGLSADDNDGSLLQGNDE--------RLYQTYGEFPLSSLDSLLDRAMSINDKLFKNKKDGLKVVDLGSGCGRLVYYLGLSRPNWILH-GIELSPLLHQEALIAQNRALSRG---LLKPFSSSSVSTSSGRISFHQGPAD-------EWG----DVLGKADIVFAYSTAWECQGFSPETGTMILSDEWNQLFSEYCSEALVITTDRSLNANEWT------------------IIDRLEVPNPEVWNSIGYLQ 263
BLAST of EWM24888.1 vs. NCBI_GenBank
Match: gi|966506414|ref|WP_058523060.1| (hypothetical protein [Legionella birminghamensis] >gi|962188786|gb|KTC73905.1| Histone methylation protein DOT1 [Legionella birminghamensis]) HSP 1 Score: 62.7734 bits (151), Expect = 9.385e-8 Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 0
Query: 125 FQAQDTFFLEHEKHAAKDLVLTKKYTTYGEFPLASLHAILQTLDLGPKDVFLDLGSGSGRLVLGTALLFPYIKASVGIEVVPEMHAIATEAARR 218
+Q+ F L + A D + +Y YGE SL A+L D GP+ F DLGSG+G+ V+ +A++FP +K S GIE+ +H A + R+
Sbjct: 46 YQSVSGFHLSKQARADND---SPEYV-YGEIEFQSLIALLSLCDPGPQTCFYDLGSGTGKAVIASAMVFP-VKKSCGIELFESLHNCALQQQRK 134
BLAST of EWM24888.1 vs. NCBI_GenBank
Match: gi|255086839|ref|XP_002509386.1| (predicted protein [Micromonas commoda] >gi|226524664|gb|ACO70644.1| predicted protein [Micromonas commoda]) HSP 1 Score: 62.3882 bits (150), Expect = 2.215e-7 Identity = 50/166 (30.12%), Postives = 68/166 (40.96%), Query Frame = 0
Query: 151 TYGEFPLASLHAILQTLDLGPKDVFLDLGSGSGRLVLGTALLFPYIKASVGIEVVPEMHAIATEAARRAVGIGDLPKMSPFHFVQGNAETGEYATKEQVNDGEEMRKNEEGAYKMHPLREATVIFMYCTTWRSQDGLYLAQPLQTSLLK--NVRSDVTIITTDKCF 314
TYGE + + L +GP DVF DLGSG GR + L + +K +VG+E+ E A A A R G L V N G Y REAT +++ C W D ++AQ L+ + N+R VTI D+ F
Sbjct: 103 TYGELTYEGCTRLGEILAMGPDDVFYDLGSGLGRATIQAHLQWG-VKRAVGVELSAERSAQARRAVERLEQNGQLDHSRRLDLVCANLLEGSY-------------------------REATAVYLCCCCW---DSTFVAQALEVLEKRAVNLRQIVTIEPLDRKF 239
BLAST of EWM24888.1 vs. NCBI_GenBank
Match: gi|341902213|gb|EGT58148.1| (hypothetical protein CAEBREN_05660 [Caenorhabditis brenneri]) HSP 1 Score: 62.003 bits (149), Expect = 4.008e-7 Identity = 44/130 (33.85%), Postives = 65/130 (50.00%), Query Frame = 0
Query: 151 TYGEFPLASLHAILQTLDLGPKDVFLDLGSGSGRLVLGTALLFPYIKASVGIEVVPEMHAIATEA----ARRAVGIGDLPKMSPFHFVQGNAETGEYATKEQVNDGEEMRKNEEGAYKMHPLREATVIFM 276
TYGE + +I + L+LGPKDVFLD+GSG G LV+ +L+ P IK S+GIE++ +A E +R IG + PF + + +Y ++ +R+ATVIFM
Sbjct: 132 TYGEVTPRQMASIFKELELGPKDVFLDIGSGIGNLVMLASLITP-IKRSIGIEILDTPANLAEEQKYWFSRILSHIGK--RHKPFELIHDDCTKTKY---------------------LNEVRQATVIFM 237 The following BLAST results are available for this feature:
BLAST of EWM24888.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|