Properties
| Property Name | Value |
|---|
| Product | dna ligase |
| Orig transcript id | gnl|cribi|Naga_100116g19.9032.mrna |
| Orig protein id | gnl|cribi|Naga_100116g19.9032 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:829969..831511 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5781 ID=rna5781|Name=rna5781|organism=Nannochloropsis gaditana|type=mRNA|length=1497bp
CTCGGCGGAGGGCGTGAGGGTTCAAGTCTGCGTCTTTGCCTTTGACCTCC
TCTTCCTCAACGGCCAATCTTACGTGAAGGAGCCGCTCTCCTCGCGCCGG
GCTCGTCTCTATTCCTTGTTTGGGCCGTTGTTGGAGGGAGGGGAGGGAGG
GAGTGAGGGAGGCTTTGAAGGCCGCTTTGCGTTTGCTGCACACACGGAGA
CGAATGACCCCGAGAAGGTCCAGGAATTTTTCACCGAGGCACTGGAGGCT
GGCTGCGAGGGGATCATGGTCAGAAGCGAGGGAGTTTGAGATGGAGGGGA
GGAGGGAAGGCGGAAGTAGAATGTGCACGACTCAAGATATGGGAAAACAT
CCACTGTGAGAAGAGTGGGAGTAAAAGTAGGAGCGAACTAGGCTGGGGTC
CAGAGGACTTTACGGACCCCCCCTCCTCCTCCCTCCCCGTATCGCCTCCT
TCATCCCTCCGTCCTCATCCCTCCTCTCCGCTAGAGGCAACTCGAGCTTG
TCAGGGAATCTAATGTCGTGCTACTGCCACATGAGCCCTCACGCCCCGTC
TAATTTTCTTTCTTTCTTTTCCTCCATCTGTCCGCAGTGCAAGTCTTTGC
CCCACGAATACGAGCCCTCGAAAAGGACGGACTCCTGGCTCAAGGTCAAG
CGCGACTACGTGGAGGGGCTGCACGACACCCTCGACCTCGTCCCCATCGG
TGCCTGGTACGTCGCTTTCTCGTCCGGTTCCGGGTATACCACGCCCATCC
TTTTCTCATGCCGTTGTACCCGTCTTTGGCCTTTCTTCGCTCCATCATCT
CTCTGTGATATTGGCAGATCAACGGTGACGAAGATGAAGGTGCATTGCTA
TGTTACCATTTTCCTGAACCCTATTCCCCCCATCATCCCTCCTTTCTCTT
GTTCGTTCCCAAGGTGGGGCAATGGCCGCAAAGCAGGCTGGTTTTCTCCC
ATCCTCCTCGCGTGCTTTAACCCCGAAACCGATGAACTTCAATCACTTTG
TCGGTGCATGTCGGGGCTGACGGACGCCATGTACACCGAGCTGACCGCGT
TTTACCAGGAAGAAGGCCGCTTGTTGGAGAATCCCAAGTCATACGTCAGG
ACAGGAGAGACATGTGCGGTGTGGTTCGAGCCTTGCCAAGTGTGGGAGGT
ACGCGGGGCAGAATTGACCCTGTCTCCAGTCCACAAGGCGGGGGTGGGCA
TCGTGGATGCCCAACGAGGATTCTCCTTGAGGTTTCCCAGATTTTTAAAG
ATACGAAGCGATAAGGGAGTGGAAGACGCCACGACTGCAGGCCAAATAGC
GGAGTTGTTCCGAATGCAAGTGCGGAGGGTGGACGTGGATGGGGATGATA
AGGACGGGGGAAGGAAGAAAGGAGGGGCAATGAACGGCAAAGAGAAGGAA
GAGGCAGTAGAGGAGCGAGAGGAGGAATGGGAAGACATTTTGTAAGTTTT
AAAAAGCAAGTAATGTAAAAAGACCGGAACGCAAGCGTTATTGAAAA back to topprotein sequence of rna5781 >rna5781-protein ID=rna5781-protein|Name=rna5781|organism=Nannochloropsis gaditana|type=polypeptide|length=360bp
MPLYPQLTMPPKKRHAAKNGKINTESPAGKKSRVAATSPGNQTSITAFFA
EGSGGKATASSKGKFLTDLKTNPANVIANERVDRPREIEMVELLTSEDEG
SREKPEVENVRLPQLDTEDRAVQDQAQAQNLTEAMEDLPDLENTEGNRSS
PGDEGIVAPPPASTAPSSPSASALTGSPVDLPCTRYDAVSDACWSEKTPA
PYLHLAWAFELLCSTTKRLTKADVLVNTFRSLIALAPSDLLPAVYLSSNK
LSSSFQGIDINVGGSTVSAAVVQATGTSSEKLKQLYIELGDLGDVAQALR
VRQRMLVPPSPLSIRGVYRTIVDMANMKGQGCEGRKRAMMVRLIRSCRGP
EARFLASCRL back to topmRNA from alignment at CM002466.1:829969..831511- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5781 ID=rna5781|Name=rna5781|organism=Nannochloropsis gaditana|type=mRNA|length=1543bp|location=Sequence derived from alignment at CM002466.1:829969..831511- (Nannochloropsis gaditana)
ATGCCCCTTTATCCACAGCTTACCATGCCTCCGAAGAAACGTCATGCTGC
TAAAAATGGAAAAATCAATACTGAAAGCCCTGCAGGGAAGAAGAGTAGAG
TCGCAGCTACCTCTCCAGGCAACCAGACAAGCATTACTGCTTTCTTTGCT
GAGGGGAGTGGAGGTAAAGCTACCGCGTCGTCTAAAGGAAAGTTTTTAAC
AGACCTCAAAACAAACCCAGCGAATGTCATCGCAAACGAACGCGTTGATA
GACCGCGAGAGATAGAAATGGTGGAGCTGCTTACCTCGGAAGATGAGGGA
AGCCGTGAGAAGCCCGAGGTAGAGAATGTCCGACTTCCGCAGCTCGACAC
GGAGGACAGAGCAGTCCAGGATCAAGCGCAGGCCCAAAATCTTACAGAGG
CCATGGAGGACCTACCAGATCTAGAAAATACAGAAGGAAACAGGTCGAGT
CCGGGGGACGAAGGCATCGTTGCCCCACCGCCTGCTTCCACGGCCCCCTC
CTCGCCCTCCGCCAGTGCCCTCACCGGCAGCCCCGTCGATCTTCCCTGCA
CGCGTTACGACGCCGTGTCCGACGCCTGCTGGAGCGAGAAGACACCCGCG
CCGTACCTGCACCTAGCCTGGGCGTTCGAGCTCCTGTGCTCGACCACCAA
ACGGCTGACAAAAGCCGACGTGCTCGTGAACACCTTCCGGTCCCTGATCG
CCTTGGCGCCTTCCGACCTCCTCCCAGCGGTCTACCTCTCCAGCAACAAG
CTGAGCTCCTCCTTTCAAGGTATCGACATCAATGTGGGCGGATCCACCGT
CTCGGCAGCCGTGGTTCAAGCCACGGGCACGTCGTCGGAGAAACTCAAAC
AGCTGTACATCGAGCTCGGGTAAGGGGCCCAGAGGGGAAGGACAGAAGAA
TCACAAGCGCGGGGGATGCAGTAAATACGAGATTCCTCTTTTTAGCGACG
TGAAGCCATGGGGTGGGGGTGGAAAGGGAGGGCGGGACGTTTCCATTCAT
GTGGGAGCCCGACTGCCTGCCCCCCCCCCGCCCCTCACGCACGTCGGTCC
GTTCCTCCCCCCCCTACCCTGCTTAGGGACCTCGGCGACGTGGCTCAGGC
CCTCCGCGTCCGGCAGCGCATGCTCGTTCCCCCCAGCCCCCTCAGCATCC
GCGGGGTCTACCGCACCATCGTCGACATGGCCAACATGAAAGGTAAGCCC
TCCTTCCCTCCCTCCCTCCCCCCGTTCCCTCCCTCTCCGAGCCTACCACC
AGCTTCCTTTTCCCCTCTGGTCACAGGACAAGGCTGTGAAGGACGGAAAC
GGGCCATGATGGTTCGCCTCATTCGCTCATGCCGGGGACCGGAGGCCAGA
TTCTTAGGTGGGCCTCCCTCCCTCCCCCCCTCCCTCCCTTCTACCCCACC
TCCCCCCCTCCTCCCCTCCTCCCTATCTTCTTCCCCATCTGATCCCCTTA
CCCCGGCGGGTTACCCTTCCATCCTACCAGTTCGGACCTTGGTGCAAAAC
CTTCGGACCGGCGCCACCTTAACTAGCGTCCTGTCGGCTTTAG back to topCoding sequence (CDS) from alignment at CM002466.1:829969..831511- >rna5781 ID=rna5781|Name=rna5781|organism=Nannochloropsis gaditana|type=CDS|length=4332bp|location=Sequence derived from alignment at CM002466.1:829969..831511- (Nannochloropsis gaditana)
CGTCCTGTCGGCTTTAGGACAAGGCTGTGAAGGACGGAAACGGGCCATGA
TGGTTCGCCTCATTCGCTCATGCCGGGGACCGGAGGCCAGATTCTTAGGG
ACCTCGGCGACGTGGCTCAGGCCCTCCGCGTCCGGCAGCGCATGCTCGTT
CCCCCCAGCCCCCTCAGCATCCGCGGGGTCTACCGCACCATCGTCGACAT
GGCCAACATGAAAGATGCCCCTTTATCCACAGCTTACCATGCCTCCGAAG
AAACGTCATGCTGCTAAAAATGGAAAAATCAATACTGAAAGCCCTGCAGG
GAAGAAGAGTAGAGTCGCAGCTACCTCTCCAGGCAACCAGACAAGCATTA
CTGCTTTCTTTGCTGAGGGGAGTGGAGGTAAAGCTACCGCGTCGTCTAAA
GGAAAGTTTTTAACAGACCTCAAAACAAACCCAGCGAATGTCATCGCAAA
CGAACGCGTTGATAGACCGCGAGAGATAGAAATGGTGGAGCTGCTTACCT
CGGAAGATGAGGGAAGCCGTGAGAAGCCCGAGGTAGAGAATGTCCGACTT
CCGCAGCTCGACACGGAGGACAGAGCAGTCCAGGATCAAGCGCAGGCCCA
AAATCTTACAGAGGCCATGGAGGACCTACCAGATCTAGAAAATACAGAAG
GAAACAGGTCGAGTCCGGGGGACGAAGGCATCGTTGCCCCACCGCCTGCT
TCCACGGCCCCCTCCTCGCCCTCCGCCAGTGCCCTCACCGGCAGCCCCGT
CGATCTTCCCTGCACGCGTTACGACGCCGTGTCCGACGCCTGCTGGAGCG
AGAAGACACCCGCGCCGTACCTGCACCTAGCCTGGGCGTTCGAGCTCCTG
TGCTCGACCACCAAACGGCTGACAAAAGCCGACGTGCTCGTGAACACCTT
CCGGTCCCTGATCGCCTTGGCGCCTTCCGACCTCCTCCCAGCGGTCTACC
TCTCCAGCAACAAGCTGAGCTCCTCCTTTCAAGGTATCGACATCAATGTG
GGCGGATCCACCGTCTCGGCAGCCGTGGTTCAAGCCACGGGCACGTCGTC
GGAGAAACTCAAACAGCTGTACATCGAGCTCGGCGTCCTGTCGGCTTTAG
GACAAGGCTGTGAAGGACGGAAACGGGCCATGATGGTTCGCCTCATTCGC
TCATGCCGGGGACCGGAGGCCAGATTCTTAGGGACCTCGGCGACGTGGCT
CAGGCCCTCCGCGTCCGGCAGCGCATGCTCGTTCCCCCCAGCCCCCTCAG
CATCCGCGGGGTCTACCGCACCATCGTCGACATGGCCAACATGAAAGATG
CCCCTTTATCCACAGCTTACCATGCCTCCGAAGAAACGTCATGCTGCTAA
AAATGGAAAAATCAATACTGAAAGCCCTGCAGGGAAGAAGAGTAGAGTCG
CAGCTACCTCTCCAGGCAACCAGACAAGCATTACTGCTTTCTTTGCTGAG
GGGAGTGGAGGTAAAGCTACCGCGTCGTCTAAAGGAAAGTTTTTAACAGA
CCTCAAAACAAACCCAGCGAATGTCATCGCAAACGAACGCGTTGATAGAC
CGCGAGAGATAGAAATGGTGGAGCTGCTTACCTCGGAAGATGAGGGAAGC
CGTGAGAAGCCCGAGGTAGAGAATGTCCGACTTCCGCAGCTCGACACGGA
GGACAGAGCAGTCCAGGATCAAGCGCAGGCCCAAAATCTTACAGAGGCCA
TGGAGGACCTACCAGATCTAGAAAATACAGAAGGAAACAGGTCGAGTCCG
GGGGACGAAGGCATCGTTGCCCCACCGCCTGCTTCCACGGCCCCCTCCTC
GCCCTCCGCCAGTGCCCTCACCGGCAGCCCCGTCGATCTTCCCTGCACGC
GTTACGACGCCGTGTCCGACGCCTGCTGGAGCGAGAAGACACCCGCGCCG
TACCTGCACCTAGCCTGGGCGTTCGAGCTCCTGTGCTCGACCACCAAACG
GCTGACAAAAGCCGACGTGCTCGTGAACACCTTCCGGTCCCTGATCGCCT
TGGCGCCTTCCGACCTCCTCCCAGCGGTCTACCTCTCCAGCAACAAGCTG
AGCTCCTCCTTTCAAGGTATCGACATCAATGTGGGCGGATCCACCGTCTC
GGCAGCCGTGGTTCAAGCCACGGGCACGTCGTCGGAGAAACTCAAACAGC
TGTACATCGAGCTCGGCGTCCTGTCGGCTTTAGGACAAGGCTGTGAAGGA
CGGAAACGGGCCATGATGGTTCGCCTCATTCGCTCATGCCGGGGACCGGA
GGCCAGATTCTTAGGGACCTCGGCGACGTGGCTCAGGCCCTCCGCGTCCG
GCAGCGCATGCTCGTTCCCCCCAGCCCCCTCAGCATCCGCGGGGTCTACC
GCACCATCGTCGACATGGCCAACATGAAAGATGCCCCTTTATCCACAGCT
TACCATGCCTCCGAAGAAACGTCATGCTGCTAAAAATGGAAAAATCAATA
CTGAAAGCCCTGCAGGGAAGAAGAGTAGAGTCGCAGCTACCTCTCCAGGC
AACCAGACAAGCATTACTGCTTTCTTTGCTGAGGGGAGTGGAGGTAAAGC
TACCGCGTCGTCTAAAGGAAAGTTTTTAACAGACCTCAAAACAAACCCAG
CGAATGTCATCGCAAACGAACGCGTTGATAGACCGCGAGAGATAGAAATG
GTGGAGCTGCTTACCTCGGAAGATGAGGGAAGCCGTGAGAAGCCCGAGGT
AGAGAATGTCCGACTTCCGCAGCTCGACACGGAGGACAGAGCAGTCCAGG
ATCAAGCGCAGGCCCAAAATCTTACAGAGGCCATGGAGGACCTACCAGAT
CTAGAAAATACAGAAGGAAACAGGTCGAGTCCGGGGGACGAAGGCATCGT
TGCCCCACCGCCTGCTTCCACGGCCCCCTCCTCGCCCTCCGCCAGTGCCC
TCACCGGCAGCCCCGTCGATCTTCCCTGCACGCGTTACGACGCCGTGTCC
GACGCCTGCTGGAGCGAGAAGACACCCGCGCCGTACCTGCACCTAGCCTG
GGCGTTCGAGCTCCTGTGCTCGACCACCAAACGGCTGACAAAAGCCGACG
TGCTCGTGAACACCTTCCGGTCCCTGATCGCCTTGGCGCCTTCCGACCTC
CTCCCAGCGGTCTACCTCTCCAGCAACAAGCTGAGCTCCTCCTTTCAAGG
TATCGACATCAATGTGGGCGGATCCACCGTCTCGGCAGCCGTGGTTCAAG
CCACGGGCACGTCGTCGGAGAAACTCAAACAGCTGTACATCGAGCTCGGC
GTCCTGTCGGCTTTAGGACAAGGCTGTGAAGGACGGAAACGGGCCATGAT
GGTTCGCCTCATTCGCTCATGCCGGGGACCGGAGGCCAGATTCTTAGGGA
CCTCGGCGACGTGGCTCAGGCCCTCCGCGTCCGGCAGCGCATGCTCGTTC
CCCCCAGCCCCCTCAGCATCCGCGGGGTCTACCGCACCATCGTCGACATG
GCCAACATGAAAGATGCCCCTTTATCCACAGCTTACCATGCCTCCGAAGA
AACGTCATGCTGCTAAAAATGGAAAAATCAATACTGAAAGCCCTGCAGGG
AAGAAGAGTAGAGTCGCAGCTACCTCTCCAGGCAACCAGACAAGCATTAC
TGCTTTCTTTGCTGAGGGGAGTGGAGGTAAAGCTACCGCGTCGTCTAAAG
GAAAGTTTTTAACAGACCTCAAAACAAACCCAGCGAATGTCATCGCAAAC
GAACGCGTTGATAGACCGCGAGAGATAGAAATGGTGGAGCTGCTTACCTC
GGAAGATGAGGGAAGCCGTGAGAAGCCCGAGGTAGAGAATGTCCGACTTC
CGCAGCTCGACACGGAGGACAGAGCAGTCCAGGATCAAGCGCAGGCCCAA
AATCTTACAGAGGCCATGGAGGACCTACCAGATCTAGAAAATACAGAAGG
AAACAGGTCGAGTCCGGGGGACGAAGGCATCGTTGCCCCACCGCCTGCTT
CCACGGCCCCCTCCTCGCCCTCCGCCAGTGCCCTCACCGGCAGCCCCGTC
GATCTTCCCTGCACGCGTTACGACGCCGTGTCCGACGCCTGCTGGAGCGA
GAAGACACCCGCGCCGTACCTGCACCTAGCCTGGGCGTTCGAGCTCCTGT
GCTCGACCACCAAACGGCTGACAAAAGCCGACGTGCTCGTGAACACCTTC
CGGTCCCTGATCGCCTTGGCGCCTTCCGACCTCCTCCCAGCGGTCTACCT
CTCCAGCAACAAGCTGAGCTCCTCCTTTCAAGGTATCGACATCAATGTGG
GCGGATCCACCGTCTCGGCAGCCGTGGTTCAAGCCACGGGCACGTCGTCG
GAGAAACTCAAACAGCTGTACATCGAGCTCGG back to top
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