EWM24904.1, cds5766 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24904.1 vs. NCBI_GenBank
Match: gi|585106531|gb|EWM24904.1| (dna ligase [Nannochloropsis gaditana]) HSP 1 Score: 736.873 bits (1901), Expect = 0.000e+0 Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0
Query: 1 MPLYPQLTMPPKKRHAAKNGKINTESPAGKKSRVAATSPGNQTSITAFFAEGSGGKATASSKGKFLTDLKTNPANVIANERVDRPREIEMVELLTSEDEGSREKPEVENVRLPQLDTEDRAVQDQAQAQNLTEAMEDLPDLENTEGNRSSPGDEGIVAPPPASTAPSSPSASALTGSPVDLPCTRYDAVSDACWSEKTPAPYLHLAWAFELLCSTTKRLTKADVLVNTFRSLIALAPSDLLPAVYLSSNKLSSSFQGIDINVGGSTVSAAVVQATGTSSEKLKQLYIELGDLGDVAQALRVRQRMLVPPSPLSIRGVYRTIVDMANMKGQGCEGRKRAMMVRLIRSCRGPEARFLASCRL 360
MPLYPQLTMPPKKRHAAKNGKINTESPAGKKSRVAATSPGNQTSITAFFAEGSGGKATASSKGKFLTDLKTNPANVIANERVDRPREIEMVELLTSEDEGSREKPEVENVRLPQLDTEDRAVQDQAQAQNLTEAMEDLPDLENTEGNRSSPGDEGIVAPPPASTAPSSPSASALTGSPVDLPCTRYDAVSDACWSEKTPAPYLHLAWAFELLCSTTKRLTKADVLVNTFRSLIALAPSDLLPAVYLSSNKLSSSFQGIDINVGGSTVSAAVVQATGTSSEKLKQLYIELGDLGDVAQALRVRQRMLVPPSPLSIRGVYRTIVDMANMKGQGCEGRKRAMMVRLIRSCRGPEARFLASCRL
Sbjct: 1 MPLYPQLTMPPKKRHAAKNGKINTESPAGKKSRVAATSPGNQTSITAFFAEGSGGKATASSKGKFLTDLKTNPANVIANERVDRPREIEMVELLTSEDEGSREKPEVENVRLPQLDTEDRAVQDQAQAQNLTEAMEDLPDLENTEGNRSSPGDEGIVAPPPASTAPSSPSASALTGSPVDLPCTRYDAVSDACWSEKTPAPYLHLAWAFELLCSTTKRLTKADVLVNTFRSLIALAPSDLLPAVYLSSNKLSSSFQGIDINVGGSTVSAAVVQATGTSSEKLKQLYIELGDLGDVAQALRVRQRMLVPPSPLSIRGVYRTIVDMANMKGQGCEGRKRAMMVRLIRSCRGPEARFLASCRL 360
BLAST of EWM24904.1 vs. NCBI_GenBank
Match: gi|971507314|dbj|GAQ90890.1| (putative DNA ligase 1 [Klebsormidium nitens]) HSP 1 Score: 184.882 bits (468), Expect = 3.629e-48 Identity = 84/177 (47.46%), Postives = 121/177 (68.36%), Query Frame = 0
Query: 179 VDLPCTRYDAVSDACWSEKTPAPYLHLAWAFELLCSTTKRLTKADVLVNTFRSLIALAPSDLLPAVYLSSNKLSSSFQGIDINVGGSTVSAAVVQATGTSSEKLKQLYIELGDLGDVAQALRVRQRMLVPPSPLSIRGVYRTIVDMANMKGQGCEGRKRAMMVRLIRSCRGPEARFL 355
V L +YD + ACW+ APYLHLA FE+L RL AD+L N FRSL+AL+P D+LPAVYLS+N+++ F+ +D+++GGSTV AA+ +ATGTS ++++LY LGDLGDVA A + RQ L+ P PL + VYR + ++ G GC RK+ +++ L+R+CR E +F+
Sbjct: 1205 VTLSLAKYDPIGHACWTRGEAAPYLHLARTFEILERERGRLKMADILCNMFRSLLALSPDDILPAVYLSTNRVAPDFENVDMSIGGSTVGAAIAEATGTSKAQMRELYNSLGDLGDVALACKQRQATLMAPPPLRVAQVYRALRKISKETGPGCNNRKKNIVLGLLRACREKETQFV 1381
BLAST of EWM24904.1 vs. NCBI_GenBank
Match: gi|1027102362|ref|XP_016649480.1| (PREDICTED: DNA ligase 1 [Prunus mume]) HSP 1 Score: 183.726 bits (465), Expect = 9.562e-48 Identity = 125/371 (33.69%), Postives = 189/371 (50.94%), Query Frame = 0
Query: 9 MPPKKRHAAKNGKINTESPAGKKSRVAATSPGNQTSITAFFAEGSGGKATASSKGKFLTDLKTNPANVIANERVDRPREIEMVELLTSEDEGSREKPEVENVRLPQLDTED-RAVQDQA-QAQNLTEAMEDLPD--LENTEGN--------------RSSPGDEGIVA-----PPPASTAPSSPSASALTGSPVDLPCTRYDAVSDACWSEKTPAPYLHLAWAFELLCSTTKRLTKADVLVNTFRSLIALAPSDLLPAVYLSSNKLSSSFQGIDINVGGSTVSAAVVQATGTSSEKLKQLYIELGDLGDVAQALRVRQRMLVPPSPLSIRGVYRTIVDMANMKGQGCEGRKRAMMVRLIRSCRGPEARFLA 356
+ P KR N K+N + S++ + P Q +IT FF+ K L D++ P EI GS ++ V++ LP DT+ R DQ Q + TE++E L T G+ RS + G+V P A ++ + + + LP +YD DACWS APYLHLA F+LL ++ +L N FRSL+AL+P D+LP+VYL +NK+++ + +++N+GGS V++A+ A GTS K++++Y ELGDLGDVAQA R Q++L PPSPL I+ V+ + ++ G G GRK++++V L+RSCR E +FL
Sbjct: 350 ISPGKRARNTNNKVNKKVKLN--SKLDSRGP-KQLAITKFFS-------------KVLPDVQETP-------------EI-----------GSMDEQNVKDESLPHDDTKSYRDEIDQFLQIIDGTESLESYAATILRKTNGDINEALNIYYCNREVRSGKNEAGLVVDSGKMKPTADSSVEVSLQEKVKTTVLSLPPEKYDPTEDACWSCGQRAPYLHLARTFDLLEDEKGKIKATSMLCNMFRSLLALSPEDVLPSVYLCTNKIAADHENVELNIGGSLVTSALEDACGTSRSKIREMYNELGDLGDVAQACRQTQKLLAPPSPLLIKDVFFALQKISVQTGSGSTGRKKSLIVNLMRSCREKEMKFLV 680
BLAST of EWM24904.1 vs. NCBI_GenBank
Match: gi|551675185|ref|XP_005840347.1| (hypothetical protein GUITHDRAFT_161026 [Guillardia theta CCMP2712] >gi|428184512|gb|EKX53367.1| hypothetical protein GUITHDRAFT_161026 [Guillardia theta CCMP2712]) HSP 1 Score: 181.415 bits (459), Expect = 3.047e-47 Identity = 116/346 (33.53%), Postives = 180/346 (52.02%), Query Frame = 0
Query: 12 KKRHAAKNGKINTESPAGKKSRVAATSPGNQTSITAFFAEGSGGKATASSKGKFLTDLKTNPANVIANERVDRPREIEMVELLTSEDEGSREKPEVENVRLPQLDTEDRAVQDQAQAQN--LTEAMEDLPDLENTEGNRSSPGDEGIVAPPPASTAPSSPSASALTGSPVDLPCTRYDAVSDACWSEKTPAPYLHLAWAFELLCSTTKRLTKADVLVNTFRSLIALAPSDLLPAVYLSSNKLSSSFQGIDINVGGSTVSAAVVQATGTSSEKLKQLYIELGDLGDVAQALRVRQRMLVPPSPLSIRGVYRTIVDMANMKGQGCEGRKRAMMVRLIRSCRGPEARFL 355
K+ A+ N + ++SR + SP Q+SI FF GSG PA+ ANE VD+ + E E R++ EV + L ++E+R D+AQ LT+ L + +T G++ D+ + S + S S+ + Y+ DACW PAPYLHLA F + + R + N FRS++ L P D+LPAVYL+ K++ + +GI++NVG S +S AV + TG S ++ + Y +LGDLGDVAQ+ R QR++ P+PL++R V++T+ +AN G G R++A+M +L+RSCR E R++
Sbjct: 26 KRSKASSNATKVKKERTSRESRASTRSPSKQSSILKFFM-GSG-----------------TPASQEANETVDQGKRN------LREAEPKRDENEV--IELDSSESEERPAADEAQDSEPRLTDKWIKLDN--STGGSQIETTDKKLKLEDSTSGSQSDKFDSS------RILADDYNPEQDACWKRGEPAPYLHLARTFSTIDNEKGRYKLRTAMCNMFRSILCLTPEDVLPAVYLAVGKIAPAHEGIELNVGDSAISDAVAEVTGVSRSRMHEAYAKLGDLGDVAQSFRRNQRLICQPTPLTVRDVFKTLKAIANEGGAGSSARRKALMTKLLRSCREQETRYI 337
BLAST of EWM24904.1 vs. NCBI_GenBank
Match: gi|1162531678|ref|XP_020414779.1| (DNA ligase 6 isoform X5 [Prunus persica]) HSP 1 Score: 180.259 bits (456), Expect = 1.451e-46 Identity = 87/204 (42.65%), Postives = 132/204 (64.71%), Query Frame = 0
Query: 153 DEGIVAPPPASTAPSSPSASALTGSPVDLPCTRYDAVSDACWSEKTPAPYLHLAWAFELLCSTTKRLTKADVLVNTFRSLIALAPSDLLPAVYLSSNKLSSSFQGIDINVGGSTVSAAVVQATGTSSEKLKQLYIELGDLGDVAQALRVRQRMLVPPSPLSIRGVYRTIVDMANMKGQGCEGRKRAMMVRLIRSCRGPEARFLA 356
D G + P S+ S + T + + LP +Y+ DACWS APYLHLA F+LL ++ +L N FRSL+AL+P D+LP+VYL +NK+++ + +++N+GGS V++A+ A GTS K++++Y ELGDLGDVAQA R Q++L PPSPL I+ V+ + ++ G G GRK+++++ L+RSCR E +FL
Sbjct: 703 DSGKMKPTADSSVEVSLQENVKT-TVLSLPPEKYNPTEDACWSRGQRAPYLHLARTFDLLEDEKGKIKATSMLCNMFRSLLALSPEDVLPSVYLCTNKIAADHENVELNIGGSLVTSALEDACGTSRSKIREMYNELGDLGDVAQACRQTQKLLAPPSPLLIKDVFFALQKISVQTGSGSTGRKKSLILNLMRSCREKEMKFLV 905
BLAST of EWM24904.1 vs. NCBI_GenBank
Match: gi|1162531676|ref|XP_020414778.1| (DNA ligase 6 isoform X4 [Prunus persica]) HSP 1 Score: 180.259 bits (456), Expect = 1.507e-46 Identity = 103/280 (36.79%), Postives = 160/280 (57.14%), Query Frame = 0
Query: 100 GSREKPEVENVRLPQLDTED-RAVQDQA-QAQNLTEAMEDLPD--LENTEGN--------------RSSPGDEGIVA-----PPPASTAPSSPSASALTGSPVDLPCTRYDAVSDACWSEKTPAPYLHLAWAFELLCSTTKRLTKADVLVNTFRSLIALAPSDLLPAVYLSSNKLSSSFQGIDINVGGSTVSAAVVQATGTSSEKLKQLYIELGDLGDVAQALRVRQRMLVPPSPLSIRGVYRTIVDMANMKGQGCEGRKRAMMVRLIRSCRGPEARFLA 356
GS ++ +++ LP DT+ R DQ Q + TE++E L T G+ RS + G+V P A ++ + + + LP +Y+ DACWS APYLHLA F+LL ++ +L N FRSL+AL+P D+LP+VYL +NK+++ + +++N+GGS V++A+ A GTS K++++Y ELGDLGDVAQA R Q++L PPSPL I+ V+ + ++ G G GRK+++++ L+RSCR E +FL
Sbjct: 626 GSMDEQNLKDESLPHDDTKSYRDEIDQFLQIIDGTESLESYAATILRKTNGDINEALNIYYCNREVRSGKNEAGLVVDSGKMKPTADSSVEVSLQENVKTTVLSLPPEKYNPTEDACWSRGQRAPYLHLARTFDLLEDEKGKIKATSMLCNMFRSLLALSPEDVLPSVYLCTNKIAADHENVELNIGGSLVTSALEDACGTSRSKIREMYNELGDLGDVAQACRQTQKLLAPPSPLLIKDVFFALQKISVQTGSGSTGRKKSLILNLMRSCREKEMKFLV 905
BLAST of EWM24904.1 vs. NCBI_GenBank
Match: gi|1162531674|ref|XP_020414777.1| (DNA ligase 6 isoform X3 [Prunus persica]) HSP 1 Score: 179.874 bits (455), Expect = 1.726e-46 Identity = 103/280 (36.79%), Postives = 160/280 (57.14%), Query Frame = 0
Query: 100 GSREKPEVENVRLPQLDTED-RAVQDQA-QAQNLTEAMEDLPD--LENTEGN--------------RSSPGDEGIVA-----PPPASTAPSSPSASALTGSPVDLPCTRYDAVSDACWSEKTPAPYLHLAWAFELLCSTTKRLTKADVLVNTFRSLIALAPSDLLPAVYLSSNKLSSSFQGIDINVGGSTVSAAVVQATGTSSEKLKQLYIELGDLGDVAQALRVRQRMLVPPSPLSIRGVYRTIVDMANMKGQGCEGRKRAMMVRLIRSCRGPEARFLA 356
GS ++ +++ LP DT+ R DQ Q + TE++E L T G+ RS + G+V P A ++ + + + LP +Y+ DACWS APYLHLA F+LL ++ +L N FRSL+AL+P D+LP+VYL +NK+++ + +++N+GGS V++A+ A GTS K++++Y ELGDLGDVAQA R Q++L PPSPL I+ V+ + ++ G G GRK+++++ L+RSCR E +FL
Sbjct: 626 GSMDEQNLKDESLPHDDTKSYRDEIDQFLQIIDGTESLESYAATILRKTNGDINEALNIYYCNREVRSGKNEAGLVVDSGKMKPTADSSVEVSLQENVKTTVLSLPPEKYNPTEDACWSRGQRAPYLHLARTFDLLEDEKGKIKATSMLCNMFRSLLALSPEDVLPSVYLCTNKIAADHENVELNIGGSLVTSALEDACGTSRSKIREMYNELGDLGDVAQACRQTQKLLAPPSPLLIKDVFFALQKISVQTGSGSTGRKKSLILNLMRSCREKEMKFLV 905
BLAST of EWM24904.1 vs. NCBI_GenBank
Match: gi|1162531672|ref|XP_020414776.1| (DNA ligase 6 isoform X2 [Prunus persica]) HSP 1 Score: 179.874 bits (455), Expect = 1.843e-46 Identity = 103/280 (36.79%), Postives = 160/280 (57.14%), Query Frame = 0
Query: 100 GSREKPEVENVRLPQLDTED-RAVQDQA-QAQNLTEAMEDLPD--LENTEGN--------------RSSPGDEGIVA-----PPPASTAPSSPSASALTGSPVDLPCTRYDAVSDACWSEKTPAPYLHLAWAFELLCSTTKRLTKADVLVNTFRSLIALAPSDLLPAVYLSSNKLSSSFQGIDINVGGSTVSAAVVQATGTSSEKLKQLYIELGDLGDVAQALRVRQRMLVPPSPLSIRGVYRTIVDMANMKGQGCEGRKRAMMVRLIRSCRGPEARFLA 356
GS ++ +++ LP DT+ R DQ Q + TE++E L T G+ RS + G+V P A ++ + + + LP +Y+ DACWS APYLHLA F+LL ++ +L N FRSL+AL+P D+LP+VYL +NK+++ + +++N+GGS V++A+ A GTS K++++Y ELGDLGDVAQA R Q++L PPSPL I+ V+ + ++ G G GRK+++++ L+RSCR E +FL
Sbjct: 626 GSMDEQNLKDESLPHDDTKSYRDEIDQFLQIIDGTESLESYAATILRKTNGDINEALNIYYCNREVRSGKNEAGLVVDSGKMKPTADSSVEVSLQENVKTTVLSLPPEKYNPTEDACWSRGQRAPYLHLARTFDLLEDEKGKIKATSMLCNMFRSLLALSPEDVLPSVYLCTNKIAADHENVELNIGGSLVTSALEDACGTSRSKIREMYNELGDLGDVAQACRQTQKLLAPPSPLLIKDVFFALQKISVQTGSGSTGRKKSLILNLMRSCREKEMKFLV 905
BLAST of EWM24904.1 vs. NCBI_GenBank
Match: gi|1162531670|ref|XP_020414775.1| (DNA ligase 6 isoform X1 [Prunus persica] >gi|1139783458|gb|ONI17285.1| hypothetical protein PRUPE_3G150300 [Prunus persica]) HSP 1 Score: 179.489 bits (454), Expect = 2.792e-46 Identity = 103/280 (36.79%), Postives = 160/280 (57.14%), Query Frame = 0
Query: 100 GSREKPEVENVRLPQLDTED-RAVQDQA-QAQNLTEAMEDLPD--LENTEGN--------------RSSPGDEGIVA-----PPPASTAPSSPSASALTGSPVDLPCTRYDAVSDACWSEKTPAPYLHLAWAFELLCSTTKRLTKADVLVNTFRSLIALAPSDLLPAVYLSSNKLSSSFQGIDINVGGSTVSAAVVQATGTSSEKLKQLYIELGDLGDVAQALRVRQRMLVPPSPLSIRGVYRTIVDMANMKGQGCEGRKRAMMVRLIRSCRGPEARFLA 356
GS ++ +++ LP DT+ R DQ Q + TE++E L T G+ RS + G+V P A ++ + + + LP +Y+ DACWS APYLHLA F+LL ++ +L N FRSL+AL+P D+LP+VYL +NK+++ + +++N+GGS V++A+ A GTS K++++Y ELGDLGDVAQA R Q++L PPSPL I+ V+ + ++ G G GRK+++++ L+RSCR E +FL
Sbjct: 626 GSMDEQNLKDESLPHDDTKSYRDEIDQFLQIIDGTESLESYAATILRKTNGDINEALNIYYCNREVRSGKNEAGLVVDSGKMKPTADSSVEVSLQENVKTTVLSLPPEKYNPTEDACWSRGQRAPYLHLARTFDLLEDEKGKIKATSMLCNMFRSLLALSPEDVLPSVYLCTNKIAADHENVELNIGGSLVTSALEDACGTSRSKIREMYNELGDLGDVAQACRQTQKLLAPPSPLLIKDVFFALQKISVQTGSGSTGRKKSLILNLMRSCREKEMKFLV 905
BLAST of EWM24904.1 vs. NCBI_GenBank
Match: gi|835981939|ref|XP_012701846.1| (PREDICTED: DNA cross-link repair 1 protein isoform X3 [Setaria italica]) HSP 1 Score: 178.718 bits (452), Expect = 4.334e-46 Identity = 114/357 (31.93%), Postives = 185/357 (51.82%), Query Frame = 0
Query: 11 PKKRHAAKNGKINTESPAGKKSRVAATSPG--NQTSITAFFAEGSGGKATASSKGKFLTDLKTNPANVIANER---VDRPREIEMVELLTSEDEGSREKPEVENVRLPQLDTEDRAVQDQAQAQNLTEAMEDLPDLENTEG---NRSSPGD---EGIVAPPPASTAPSSPSASALTGSPVDLPCTRYDAVSDACWSEKTPAPYLHLAWAFELLCSTTKRLTKADVLVNTFRSLIALAPSDLLPAVYLSSNKLSSSFQGIDINVGGSTVSAAVVQATGTSSEKLKQLYIELGDLGDVAQALRVRQRMLVPPSPLSIRGVYRTIVDMANMKGQGCEGRKRAMMVRLIRSCRGPEARFLA 356
PKK K G T P K ++T G Q++IT +F + + + + K +K + NV ++++ + + ++ + +LL D G + V + + D + ++N A++ L+NT+ ++ S D + A P S S + + V LP +Y + ACW+ PAPYLHLA F L+ ++ N FRSL+AL+P D+LPAVYL +NK+S + +++N+GGS V +A+ ++ GTS K+ ++Y GDLG+VAQ R Q +L PP PLSIR VY T+ ++ + G G GR++ +++ LIRSCR E +FL
Sbjct: 568 PKKE--KKRGSGTTNKPKKKGRLTSSTESGGRKQSTITNYFIRATAATSKSGTADK--VTVKAHQNNVESDDQLTDIAKTQDQSVDQLLQIVDGGMSREYAVSLLEKAKGDVTVAVDIFYSSSENNVTAIDKNIALQNTQNETTDKCSNTDLACDSSQATPKVSNLHVQTSLAESDSANVSLPIEKYLPIEHACWAAGQPAPYLHLARTFNLVEKEKGKIKTTAAFCNMFRSLLALSPDDVLPAVYLCTNKISPDHENMELNIGGSLVVSALEESLGTSRSKIHEMYKTYGDLGNVAQECRQNQTLLAPPRPLSIRDVYSTLRKLSAISGSGSAGRRKILVLHLIRSCREMEMKFLV 920 The following BLAST results are available for this feature:
BLAST of EWM24904.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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