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Properties
| Property Name | Value |
|---|
| Product | dna ligase |
| Orig transcript id | gnl|cribi|Naga_100092g20.2147.mrna |
| Orig protein id | gnl|cribi|Naga_100092g20.2147 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:827180..828676 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5780 ID=rna5780|Name=rna5780|organism=Nannochloropsis gaditana|type=mRNA|length=1290bp
CTCGGCGGAGGGCGTGAGGGTTCAAGTCTGCGTCTTTGCCTTTGACCTCC
TCTTCCTCAACGGCCAATCTTACGTGAAGGAGCCGCTCTCCTCGCGCCGG
GCTCGTCTCTATTCCTTGTTTGGGCCGTTGTTGGAGGGAGGGGAGGGAGG
GAGTGAGGGAGGCTTTGAAGGCCGCTTTGCGTTTGCTGCACACACGGAGA
CGAATGACCCCGAGAAGGTCCAGGAATTTTTCACCGAGGCACTGGAGGCT
GGCTGCGAGGGGATCATGGTCAGAAGCGAGGGAGTTTGAGATGGAGGGGA
GGAGGGAAGGCGGAAGTAGAATGTGCACGACTCAAGATATGGGAAAACAT
CCACTGTGAGAAGAGTGGGAGTAAAAGTAGGAGCGAACTAGGCTGGGGTC
CAGAGGACTTTACGGACCCCCCCTCCTCCTCCCTCCCCGTATCGCCTCCT
TCATCCCTCCGTCCTCATCCCTCCTCTCCGCTAGAGGCAACTCGAGCTTG
TCAGGGAATCTAATGTCGTGCTACTGCCACATGAGCCCTCACGCCCCGTC
TAATTTTCTTTCTTTCTTTTCCTCCATCTGTCCGCAGTGCAAGTCTTTGC
CCCACGAATACGAGCCCTCGAAAAGGACGGACTCCTGGCTCAAGGTCAAG
CGCGACTACGTGGAGGGGCTGCACGACACCCTCGACCTCGTCCCCATCGG
TGCCTGGTGGGGCAATGGCCGCAAAGCAGGCTGGTTTTCTCCCATCCTCC
TCGCGTGCTTTAACCCCGAAACCGATGAACTTCAATCACTTTGTCGGTGC
ATGTCGGGGCTGACGGACGCCATGTACACCGAGCTGACCGCGTTTTACCA
GGAAGAAGGCCGCTTGTTGGAGAATCCCAAGTCATACGTCAGGACAGGAG
AGACATGTGCGGTGTGGTTCGAGCCTTGCCAAGTGTGGGAGGTACGCGGG
GCAGAATTGACCCTGTCTCCAGTCCACAAGGCGGGGGTGGGCATCGTGGA
TGCCCAACGAGGATTCTCCTTGAGGTTTCCCAGATTTTTAAAGATACGAA
GCGATAAGGGAGTGGAAGACGCCACGACTGCAGGCCAAATAGCGGAGTTG
TTCCGAATGCAAGTGCGGAGGGTGGACGTGGATGGGGATGATAAGGACGG
GGGAAGGAAGAAAGGAGGGGCAATGAACGGCAAAGAGAAGGAAGAGGCAG
TAGAGGAGCGAGAGGAGGAATGGGAAGACATTTTGTAAGTTTTAAAAAGC
AAGTAATGTAAAAAGACCGGAACGCAAGCGTTATTGAAAA back to topprotein sequence of rna5780 >rna5780-protein ID=rna5780-protein|Name=rna5780|organism=Nannochloropsis gaditana|type=polypeptide|length=310bp
MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYV
EGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSCRCTRLWPFFAPSSLCDI
GRSTVTKMKVHCYVTIFLNPIPPIIPPFSCSFPRWGNGRKAGWFSPILLA
CFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGET
CAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSD
KGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVE
EREEEWEDIL back to topmRNA from alignment at CM002466.1:827180..828676- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna5780 ID=rna5780|Name=rna5780|organism=Nannochloropsis gaditana|type=mRNA|length=1497bp|location=Sequence derived from alignment at CM002466.1:827180..828676- (Nannochloropsis gaditana)
CTCGGCGGAGGGCGTGAGGGTTCAAGTCTGCGTCTTTGCCTTTGACCTCC
TCTTCCTCAACGGCCAATCTTACGTGAAGGAGCCGCTCTCCTCGCGCCGG
GCTCGTCTCTATTCCTTGTTTGGGCCGTTGTTGGAGGGAGGGGAGGGAGG
GAGTGAGGGAGGCTTTGAAGGCCGCTTTGCGTTTGCTGCACACACGGAGA
CGAATGACCCCGAGAAGGTCCAGGAATTTTTCACCGAGGCACTGGAGGCT
GGCTGCGAGGGGATCATGGTCAGAAGCGAGGGAGTTTGAGATGGAGGGGA
GGAGGGAAGGCGGAAGTAGAATGTGCACGACTCAAGATATGGGAAAACAT
CCACTGTGAGAAGAGTGGGAGTAAAAGTAGGAGCGAACTAGGCTGGGGTC
CAGAGGACTTTACGGACCCCCCCTCCTCCTCCCTCCCCGTATCGCCTCCT
TCATCCCTCCGTCCTCATCCCTCCTCTCCGCTAGAGGCAACTCGAGCTTG
TCAGGGAATCTAATGTCGTGCTACTGCCACATGAGCCCTCACGCCCCGTC
TAATTTTCTTTCTTTCTTTTCCTCCATCTGTCCGCAGTGCAAGTCTTTGC
CCCACGAATACGAGCCCTCGAAAAGGACGGACTCCTGGCTCAAGGTCAAG
CGCGACTACGTGGAGGGGCTGCACGACACCCTCGACCTCGTCCCCATCGG
TGCCTGGTACGTCGCTTTCTCGTCCGGTTCCGGGTATACCACGCCCATCC
TTTTCTCATGCCGTTGTACCCGTCTTTGGCCTTTCTTCGCTCCATCATCT
CTCTGTGATATTGGCAGATCAACGGTGACGAAGATGAAGGTGCATTGCTA
TGTTACCATTTTCCTGAACCCTATTCCCCCCATCATCCCTCCTTTCTCTT
GTTCGTTCCCAAGGTGGGGCAATGGCCGCAAAGCAGGCTGGTTTTCTCCC
ATCCTCCTCGCGTGCTTTAACCCCGAAACCGATGAACTTCAATCACTTTG
TCGGTGCATGTCGGGGCTGACGGACGCCATGTACACCGAGCTGACCGCGT
TTTACCAGGAAGAAGGCCGCTTGTTGGAGAATCCCAAGTCATACGTCAGG
ACAGGAGAGACATGTGCGGTGTGGTTCGAGCCTTGCCAAGTGTGGGAGGT
ACGCGGGGCAGAATTGACCCTGTCTCCAGTCCACAAGGCGGGGGTGGGCA
TCGTGGATGCCCAACGAGGATTCTCCTTGAGGTTTCCCAGATTTTTAAAG
ATACGAAGCGATAAGGGAGTGGAAGACGCCACGACTGCAGGCCAAATAGC
GGAGTTGTTCCGAATGCAAGTGCGGAGGGTGGACGTGGATGGGGATGATA
AGGACGGGGGAAGGAAGAAAGGAGGGGCAATGAACGGCAAAGAGAAGGAA
GAGGCAGTAGAGGAGCGAGAGGAGGAATGGGAAGACATTTTGTAAGTTTT
AAAAAGCAAGTAATGTAAAAAGACCGGAACGCAAGCGTTATTGAAAA back to topCoding sequence (CDS) from alignment at CM002466.1:827180..828676- >rna5780 ID=rna5780|Name=rna5780|organism=Nannochloropsis gaditana|type=CDS|length=933bp|location=Sequence derived from alignment at CM002466.1:827180..828676- (Nannochloropsis gaditana)
ATGTCGTGCTACTGCCACATGAGCCCTCACGCCCCGTCTAATTTTCTTTC
TTTCTTTTCCTCCATCTGTCCGCAGTGCAAGTCTTTGCCCCACGAATACG
AGCCCTCGAAAAGGACGGACTCCTGGCTCAAGGTCAAGCGCGACTACGTG
GAGGGGCTGCACGACACCCTCGACCTCGTCCCCATCGGTGCCTGGTACGT
CGCTTTCTCGTCCGGTTCCGGGTATACCACGCCCATCCTTTTCTCATGCC
GTTGTACCCGTCTTTGGCCTTTCTTCGCTCCATCATCTCTCTGTGATATT
GGCAGATCAACGGTGACGAAGATGAAGGTGCATTGCTATGTTACCATTTT
CCTGAACCCTATTCCCCCCATCATCCCTCCTTTCTCTTGTTCGTTCCCAA
GGTGGGGCAATGGCCGCAAAGCAGGCTGGTTTTCTCCCATCCTCCTCGCG
TGCTTTAACCCCGAAACCGATGAACTTCAATCACTTTGTCGGTGCATGTC
GGGGCTGACGGACGCCATGTACACCGAGCTGACCGCGTTTTACCAGGAAG
AAGGCCGCTTGTTGGAGAATCCCAAGTCATACGTCAGGACAGGAGAGACA
TGTGCGGTGTGGTTCGAGCCTTGCCAAGTGTGGGAGGTACGCGGGGCAGA
ATTGACCCTGTCTCCAGTCCACAAGGCGGGGGTGGGCATCGTGGATGCCC
AACGAGGATTCTCCTTGAGGTTTCCCAGATTTTTAAAGATACGAAGCGAT
AAGGGAGTGGAAGACGCCACGACTGCAGGCCAAATAGCGGAGTTGTTCCG
AATGCAAGTGCGGAGGGTGGACGTGGATGGGGATGATAAGGACGGGGGAA
GGAAGAAAGGAGGGGCAATGAACGGCAAAGAGAAGGAAGAGGCAGTAGAG
GAGCGAGAGGAGGAATGGGAAGACATTTTGTAA back to top
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