EWM24924.1, cds5765 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|585106552|gb|EWM24924.1| (dna ligase [Nannochloropsis gaditana]) HSP 1 Score: 645.966 bits (1665), Expect = 0.000e+0 Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query: 1 MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSCRCTRLWPFFAPSSLCDIGRSTVTKMKVHCYVTIFLNPIPPIIPPFSCSFPRWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL 310
MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSCRCTRLWPFFAPSSLCDIGRSTVTKMKVHCYVTIFLNPIPPIIPPFSCSFPRWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL
Sbjct: 1 MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSCRCTRLWPFFAPSSLCDIGRSTVTKMKVHCYVTIFLNPIPPIIPPFSCSFPRWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL 310
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|553183001|ref|XP_005853823.1| (dna ligase, partial [Nannochloropsis gaditana CCMP526] >gi|553190989|ref|XP_005855307.1| dna ligase, partial [Nannochloropsis gaditana CCMP526] >gi|422293754|gb|EKU21054.1| dna ligase, partial [Nannochloropsis gaditana CCMP526] >gi|422295238|gb|EKU22537.1| dna ligase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 518.464 bits (1334), Expect = 0.000e+0 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
Query: 10 HAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSCRCTRLWPFFAPSSLCDIGRSTVTKMKVHCYVTIFLNPIPPIIPPFSCSFPRWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATT 258
HAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSCRCTRLWPFFAPSSLCDIGRSTVTKMKVHCYVTIFLNPIPPIIPPFSCSFPRWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATT
Sbjct: 1 HAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSCRCTRLWPFFAPSSLCDIGRSTVTKMKVHCYVTIFLNPIPPIIPPFSCSFPRWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATT 249
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|585106551|gb|EWM24923.1| (dna ligase [Nannochloropsis gaditana]) HSP 1 Score: 362.073 bits (928), Expect = 2.025e-123 Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
Query: 135 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL 310
WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL
Sbjct: 66 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL 241 HSP 2 Score: 152.91 bits (385), Expect = 2.200e-41 Identity = 70/83 (84.34%), Postives = 75/83 (90.36%), Query Frame = 0
Query: 1 MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSC 83
MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAW+ +G+ +PIL +C
Sbjct: 1 MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWW-GNGRKAGWFSPILLAC 82
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|167523437|ref|XP_001746055.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163775326|gb|EDQ88950.1| predicted protein [Monosiga brevicollis MX1]) HSP 1 Score: 171.014 bits (432), Expect = 7.025e-48 Identity = 95/174 (54.60%), Postives = 117/174 (67.24%), Query Frame = 0
Query: 135 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLEN---PKSYVRTGE--TCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQR--GFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQV-----RRVDVDGDDKDGGRKKGGAMNGKEKE 296
WGNGRKAGWFSP+LLAC+NPET+ L+S+C+ MSG TD Y ELTAFY E EN KSY E T +VWFEP +VWE+RGA+LT+SPVH+AG G+V + G SLRFPRF++ R DK + +ATTA QI EL++ Q RR + GD+ D R AM G E E
Sbjct: 114 WGNGRKAGWFSPLLLACYNPETELLESVCKVMSGFTDEFYKELTAFYSRE----ENQCAKKSYYDVAESMTPSVWFEPVRVWEIRGADLTVSPVHRAGHGLVPGREAAGISLRFPRFIRERPDKTMSEATTAHQIVELYQQQFAPAASRR--LVGDEADAERHDEVAMGGLEDE 281
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|873218389|emb|CEM39468.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 176.022 bits (445), Expect = 1.002e-45 Identity = 81/140 (57.86%), Postives = 101/140 (72.14%), Query Frame = 0
Query: 135 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETC--AVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRR 272
WGNGRKAGWFSP LLAC P+ E+QS+C+ MSG TD Y E AFY++ GR++ PKS+ + +VWFEPCQVWE+RGA+LT+SP H A G+VD +G SLRFPRF+++R DK +EDATT IA LF QV R
Sbjct: 1255 WGNGRKAGWFSPYLLACVTPDG-EMQSVCKVMSGFTDEQYREFLAFYKDGGRIIPQPKSFYDVTDDLIPSVWFEPCQVWEIRGADLTISPKHSAARGLVDPTKGISLRFPRFIQVRQDKAIEDATTPDYIARLFERQVTR 1393 HSP 2 Score: 63.5438 bits (153), Expect = 1.608e-7 Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 0
Query: 26 CKSLPHE---YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSC 83
CK+L YEP+KR++ W K+K+DY+EG+ D+LDLVPIGAW+ +G+ +P L +C
Sbjct: 1212 CKALDGRLATYEPTKRSEGWAKIKKDYIEGVADSLDLVPIGAWW-GNGRKAGWFSPYLLAC 1271
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|944242147|gb|KQL06455.1| (hypothetical protein SETIT_0000392mg, partial [Setaria italica]) HSP 1 Score: 162.54 bits (410), Expect = 1.978e-45 Identity = 75/144 (52.08%), Postives = 97/144 (67.36%), Query Frame = 0
Query: 135 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGD 278
+GNGRKAGW+SP L+AC+NPET+E QS+CR MSG +D Y E+ FY E LL P Y +T E VWF QVWEVRGA+LTLSPVH A +G V RG S+R PR+++ D+ ED +T IA +F+ Q R++DV +
Sbjct: 76 YGNGRKAGWYSPFLMACYNPETEEFQSVCRVMSGFSDEFYKEMKEFYSGERILLRKP-VYYKTDEQPEVWFTAEQVWEVRGADLTLSPVHHAAIGYVHPSRGISVRMPRYIRSVPDRSPEDCSTVADIATMFKAQTRKMDVSSE 218 HSP 2 Score: 66.6254 bits (161), Expect = 2.429e-9 Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 0
Query: 33 YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSC 83
Y SKR +SWLKVKRDYVEGL D+LDLVP+GAWY +G+ +P L +C
Sbjct: 43 YSASKRCESWLKVKRDYVEGLGDSLDLVPVGAWY-GNGRKAGWYSPFLMAC 92
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|674937481|emb|CDX96133.1| (BnaA07g25980D [Brassica napus]) HSP 1 Score: 165.236 bits (417), Expect = 3.889e-45 Identity = 76/140 (54.29%), Postives = 101/140 (72.14%), Query Frame = 0
Query: 136 GNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDV 275
GNGRKAGW+SP L+AC+NPET+E QS+CR MSG +DA Y E+ FY E+ L + P Y RTGET +WF VWE+RGA+LT+SPVH A +G+V RG S+RFPRF+ R D+ E+ +TA IAE+F Q R++++
Sbjct: 181 GNGRKAGWYSPFLMACYNPETEEFQSVCRVMSGFSDAFYIEMKEFYPEDKILAKKP-PYYRTGETPDMWFPAEVVWEIRGADLTVSPVHSAALGLVHPSRGISVRFPRFICKRVDRNPEECSTAADIAEMFHAQTRKMNI 319 HSP 2 Score: 70.0922 bits (170), Expect = 5.008e-10 Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 0
Query: 5 CHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSC 83
C ++ F S I + Y P+KR+DSWLKVKRDYV+GL DTLDLVPIGAW+ +G+ +P L +C
Sbjct: 119 CRINAFLEEAFQSSCEGIMVKSLDFDAGYCPTKRSDSWLKVKRDYVDGLGDTLDLVPIGAWH-GNGRKAGWYSPFLMAC 196
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|1026763507|gb|OAE24541.1| (hypothetical protein AXG93_2415s1200 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 174.096 bits (440), Expect = 4.314e-45 Identity = 78/153 (50.98%), Postives = 104/153 (67.97%), Query Frame = 0
Query: 135 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKG 287
+GNGRKAGW+SP LLAC++PE +E QS+CR MSG TD Y E+ FY + R+L +Y +TGE C VWF P VWE+RGA+ T+SPVH+A VG++ RG S+RFPR+++ R DK E +++ IAELF Q R+VDV G + G
Sbjct: 1495 YGNGRKAGWYSPFLLACYDPEREEYQSVCRVMSGFTDVFYKEMKEFYSGD-RILPKKPTYYQTGEECNVWFTPELVWEIRGADFTVSPVHQAAVGLIHPSRGISMRFPRYIRSRQDKNPEISSSPSDIAELFHQQTRKVDVAGSKSKAVDRSG 1646 HSP 2 Score: 70.4774 bits (171), Expect = 9.411e-10 Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 0
Query: 33 YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSC 83
Y SKR+DSWLK+KRDY+EGL+D+LDLVPIGAWY +G+ +P L +C
Sbjct: 1462 YMASKRSDSWLKIKRDYMEGLNDSLDLVPIGAWY-GNGRKAGWYSPFLLAC 1511
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|552821656|ref|XP_005845908.1| (hypothetical protein CHLNCDRAFT_136511 [Chlorella variabilis] >gi|307105557|gb|EFN53806.1| hypothetical protein CHLNCDRAFT_136511 [Chlorella variabilis]) HSP 1 Score: 173.711 bits (439), Expect = 6.725e-45 Identity = 82/143 (57.34%), Postives = 106/143 (74.13%), Query Frame = 0
Query: 136 GNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFL-KIRSDKGVEDATTAGQIAELFRMQVRRVDVDG 277
GNGRKAGWFSP LLAC++P+T++LQS+CRCMSG TDA Y E + ++ K Y TGE +WFEP +VWE+RGA+L+LSPVHKA G+V A+RG LRFPRFL ++R DK EDAT++ QIAE++R Q R+V+ G
Sbjct: 1321 GNGRKAGWFSPYLLACYDPDTEQLQSVCRCMSGFTDAFYRESKERLSQT--IIPGHKPYYNTGEQPDMWFEPREVWEIRGADLSLSPVHKAAEGLVHAERGLGLRFPRFLGRVRQDKSPEDATSSQQIAEMYRAQTRKVETAG 1461 HSP 2 Score: 70.8626 bits (172), Expect = 6.805e-10 Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 0
Query: 27 KSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSC 83
K L YEPSKR+D W+KVK+DYV GLHDTLDLV IGAW+ +G+ +P L +C
Sbjct: 1281 KKLAAAYEPSKRSDHWIKVKKDYVVGLHDTLDLVVIGAWH-GNGRKAGWFSPYLLAC 1336
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|697185081|ref|XP_009601562.1| (PREDICTED: DNA ligase 6-like isoform X2 [Nicotiana tomentosiformis]) HSP 1 Score: 160.614 bits (405), Expect = 9.095e-45 Identity = 68/142 (47.89%), Postives = 99/142 (69.72%), Query Frame = 0
Query: 135 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVD 276
+GNGRKAGW+SP L+ C+NP+T+E QS+CR MSG +D+ Y E+ F+ + ++ Y RT E +WF P VWE+RGA+ T+SPVH A +G V RG S+RFPRF++ SD+ E+ +T+ IA++FR Q R++DV+
Sbjct: 60 YGNGRKAGWYSPFLMGCYNPDTEEFQSVCRVMSGFSDSFYIEMKEFFSGD-KIFNKKPHYYRTAEVADMWFSPEVVWEIRGADFTVSPVHHAAIGSVHPSRGISVRFPRFIRCLSDRKPEECSTSADIADMFRAQTRKMDVN 200 HSP 2 Score: 72.7886 bits (177), Expect = 1.382e-11 Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0
Query: 33 YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSC 83
Y PSKRTD+WLKVKRDYVEGL D+LDLVPIGAWY +G+ +P L C
Sbjct: 27 YTPSKRTDAWLKVKRDYVEGLSDSLDLVPIGAWY-GNGRKAGWYSPFLMGC 76 The following BLAST results are available for this feature:
BLAST of EWM24924.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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