EWM24924.1, cds5765 (CDS) Nannochloropsis gaditana

Overview
NameEWM24924.1
Unique Namecds5765
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:827232..828164 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24924.1
Productdna ligase
Orig transcript idgnl|cribi|Naga_100092g20.2147.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:827232..828164 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
GO:0006310DNA recombination
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0003910DNA ligase (ATP) activity
Vocabulary: INTERPRO
TermDefinition
IPR012310DNA_ligase_ATP-dep_cent
IPR012340NA-bd_OB-fold
IPR012309DNA_ligase_ATP-dep_C
Homology
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|585106552|gb|EWM24924.1| (dna ligase [Nannochloropsis gaditana])

HSP 1 Score: 645.966 bits (1665), Expect = 0.000e+0
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query:    1 MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSCRCTRLWPFFAPSSLCDIGRSTVTKMKVHCYVTIFLNPIPPIIPPFSCSFPRWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL 310
            MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSCRCTRLWPFFAPSSLCDIGRSTVTKMKVHCYVTIFLNPIPPIIPPFSCSFPRWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL
Sbjct:    1 MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSCRCTRLWPFFAPSSLCDIGRSTVTKMKVHCYVTIFLNPIPPIIPPFSCSFPRWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL 310          
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|553183001|ref|XP_005853823.1| (dna ligase, partial [Nannochloropsis gaditana CCMP526] >gi|553190989|ref|XP_005855307.1| dna ligase, partial [Nannochloropsis gaditana CCMP526] >gi|422293754|gb|EKU21054.1| dna ligase, partial [Nannochloropsis gaditana CCMP526] >gi|422295238|gb|EKU22537.1| dna ligase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 518.464 bits (1334), Expect = 0.000e+0
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
Query:   10 HAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSCRCTRLWPFFAPSSLCDIGRSTVTKMKVHCYVTIFLNPIPPIIPPFSCSFPRWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATT 258
            HAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSCRCTRLWPFFAPSSLCDIGRSTVTKMKVHCYVTIFLNPIPPIIPPFSCSFPRWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATT
Sbjct:    1 HAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSCRCTRLWPFFAPSSLCDIGRSTVTKMKVHCYVTIFLNPIPPIIPPFSCSFPRWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATT 249          
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|585106551|gb|EWM24923.1| (dna ligase [Nannochloropsis gaditana])

HSP 1 Score: 362.073 bits (928), Expect = 2.025e-123
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
Query:  135 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL 310
            WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL
Sbjct:   66 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL 241          

HSP 2 Score: 152.91 bits (385), Expect = 2.200e-41
Identity = 70/83 (84.34%), Postives = 75/83 (90.36%), Query Frame = 0
Query:    1 MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSC 83
            MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAW+      +G+ +PIL +C
Sbjct:    1 MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWW-GNGRKAGWFSPILLAC 82          
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|167523437|ref|XP_001746055.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163775326|gb|EDQ88950.1| predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 171.014 bits (432), Expect = 7.025e-48
Identity = 95/174 (54.60%), Postives = 117/174 (67.24%), Query Frame = 0
Query:  135 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLEN---PKSYVRTGE--TCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQR--GFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQV-----RRVDVDGDDKDGGRKKGGAMNGKEKE 296
            WGNGRKAGWFSP+LLAC+NPET+ L+S+C+ MSG TD  Y ELTAFY  E    EN    KSY    E  T +VWFEP +VWE+RGA+LT+SPVH+AG G+V  +   G SLRFPRF++ R DK + +ATTA QI EL++ Q      RR  + GD+ D  R    AM G E E
Sbjct:  114 WGNGRKAGWFSPLLLACYNPETELLESVCKVMSGFTDEFYKELTAFYSRE----ENQCAKKSYYDVAESMTPSVWFEPVRVWEIRGADLTVSPVHRAGHGLVPGREAAGISLRFPRFIRERPDKTMSEATTAHQIVELYQQQFAPAASRR--LVGDEADAERHDEVAMGGLEDE 281          
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|873218389|emb|CEM39468.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 176.022 bits (445), Expect = 1.002e-45
Identity = 81/140 (57.86%), Postives = 101/140 (72.14%), Query Frame = 0
Query:  135 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETC--AVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRR 272
            WGNGRKAGWFSP LLAC  P+  E+QS+C+ MSG TD  Y E  AFY++ GR++  PKS+    +    +VWFEPCQVWE+RGA+LT+SP H A  G+VD  +G SLRFPRF+++R DK +EDATT   IA LF  QV R
Sbjct: 1255 WGNGRKAGWFSPYLLACVTPDG-EMQSVCKVMSGFTDEQYREFLAFYKDGGRIIPQPKSFYDVTDDLIPSVWFEPCQVWEIRGADLTISPKHSAARGLVDPTKGISLRFPRFIQVRQDKAIEDATTPDYIARLFERQVTR 1393          

HSP 2 Score: 63.5438 bits (153), Expect = 1.608e-7
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 0
Query:   26 CKSLPHE---YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSC 83
            CK+L      YEP+KR++ W K+K+DY+EG+ D+LDLVPIGAW+      +G+ +P L +C
Sbjct: 1212 CKALDGRLATYEPTKRSEGWAKIKKDYIEGVADSLDLVPIGAWW-GNGRKAGWFSPYLLAC 1271          
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|944242147|gb|KQL06455.1| (hypothetical protein SETIT_0000392mg, partial [Setaria italica])

HSP 1 Score: 162.54 bits (410), Expect = 1.978e-45
Identity = 75/144 (52.08%), Postives = 97/144 (67.36%), Query Frame = 0
Query:  135 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGD 278
            +GNGRKAGW+SP L+AC+NPET+E QS+CR MSG +D  Y E+  FY  E  LL  P  Y +T E   VWF   QVWEVRGA+LTLSPVH A +G V   RG S+R PR+++   D+  ED +T   IA +F+ Q R++DV  +
Sbjct:   76 YGNGRKAGWYSPFLMACYNPETEEFQSVCRVMSGFSDEFYKEMKEFYSGERILLRKP-VYYKTDEQPEVWFTAEQVWEVRGADLTLSPVHHAAIGYVHPSRGISVRMPRYIRSVPDRSPEDCSTVADIATMFKAQTRKMDVSSE 218          

HSP 2 Score: 66.6254 bits (161), Expect = 2.429e-9
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 0
Query:   33 YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSC 83
            Y  SKR +SWLKVKRDYVEGL D+LDLVP+GAWY      +G+ +P L +C
Sbjct:   43 YSASKRCESWLKVKRDYVEGLGDSLDLVPVGAWY-GNGRKAGWYSPFLMAC 92          
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|674937481|emb|CDX96133.1| (BnaA07g25980D [Brassica napus])

HSP 1 Score: 165.236 bits (417), Expect = 3.889e-45
Identity = 76/140 (54.29%), Postives = 101/140 (72.14%), Query Frame = 0
Query:  136 GNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDV 275
            GNGRKAGW+SP L+AC+NPET+E QS+CR MSG +DA Y E+  FY E+  L + P  Y RTGET  +WF    VWE+RGA+LT+SPVH A +G+V   RG S+RFPRF+  R D+  E+ +TA  IAE+F  Q R++++
Sbjct:  181 GNGRKAGWYSPFLMACYNPETEEFQSVCRVMSGFSDAFYIEMKEFYPEDKILAKKP-PYYRTGETPDMWFPAEVVWEIRGADLTVSPVHSAALGLVHPSRGISVRFPRFICKRVDRNPEECSTAADIAEMFHAQTRKMNI 319          

HSP 2 Score: 70.0922 bits (170), Expect = 5.008e-10
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 0
Query:    5 CHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSC 83
            C ++      F S    I  +       Y P+KR+DSWLKVKRDYV+GL DTLDLVPIGAW+      +G+ +P L +C
Sbjct:  119 CRINAFLEEAFQSSCEGIMVKSLDFDAGYCPTKRSDSWLKVKRDYVDGLGDTLDLVPIGAWH-GNGRKAGWYSPFLMAC 196          
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|1026763507|gb|OAE24541.1| (hypothetical protein AXG93_2415s1200 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 174.096 bits (440), Expect = 4.314e-45
Identity = 78/153 (50.98%), Postives = 104/153 (67.97%), Query Frame = 0
Query:  135 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKG 287
            +GNGRKAGW+SP LLAC++PE +E QS+CR MSG TD  Y E+  FY  + R+L    +Y +TGE C VWF P  VWE+RGA+ T+SPVH+A VG++   RG S+RFPR+++ R DK  E +++   IAELF  Q R+VDV G       + G
Sbjct: 1495 YGNGRKAGWYSPFLLACYDPEREEYQSVCRVMSGFTDVFYKEMKEFYSGD-RILPKKPTYYQTGEECNVWFTPELVWEIRGADFTVSPVHQAAVGLIHPSRGISMRFPRYIRSRQDKNPEISSSPSDIAELFHQQTRKVDVAGSKSKAVDRSG 1646          

HSP 2 Score: 70.4774 bits (171), Expect = 9.411e-10
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 0
Query:   33 YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSC 83
            Y  SKR+DSWLK+KRDY+EGL+D+LDLVPIGAWY      +G+ +P L +C
Sbjct: 1462 YMASKRSDSWLKIKRDYMEGLNDSLDLVPIGAWY-GNGRKAGWYSPFLLAC 1511          
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|552821656|ref|XP_005845908.1| (hypothetical protein CHLNCDRAFT_136511 [Chlorella variabilis] >gi|307105557|gb|EFN53806.1| hypothetical protein CHLNCDRAFT_136511 [Chlorella variabilis])

HSP 1 Score: 173.711 bits (439), Expect = 6.725e-45
Identity = 82/143 (57.34%), Postives = 106/143 (74.13%), Query Frame = 0
Query:  136 GNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFL-KIRSDKGVEDATTAGQIAELFRMQVRRVDVDG 277
            GNGRKAGWFSP LLAC++P+T++LQS+CRCMSG TDA Y E      +   ++   K Y  TGE   +WFEP +VWE+RGA+L+LSPVHKA  G+V A+RG  LRFPRFL ++R DK  EDAT++ QIAE++R Q R+V+  G
Sbjct: 1321 GNGRKAGWFSPYLLACYDPDTEQLQSVCRCMSGFTDAFYRESKERLSQT--IIPGHKPYYNTGEQPDMWFEPREVWEIRGADLSLSPVHKAAEGLVHAERGLGLRFPRFLGRVRQDKSPEDATSSQQIAEMYRAQTRKVETAG 1461          

HSP 2 Score: 70.8626 bits (172), Expect = 6.805e-10
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 0
Query:   27 KSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSC 83
            K L   YEPSKR+D W+KVK+DYV GLHDTLDLV IGAW+      +G+ +P L +C
Sbjct: 1281 KKLAAAYEPSKRSDHWIKVKKDYVVGLHDTLDLVVIGAWH-GNGRKAGWFSPYLLAC 1336          
BLAST of EWM24924.1 vs. NCBI_GenBank
Match: gi|697185081|ref|XP_009601562.1| (PREDICTED: DNA ligase 6-like isoform X2 [Nicotiana tomentosiformis])

HSP 1 Score: 160.614 bits (405), Expect = 9.095e-45
Identity = 68/142 (47.89%), Postives = 99/142 (69.72%), Query Frame = 0
Query:  135 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVD 276
            +GNGRKAGW+SP L+ C+NP+T+E QS+CR MSG +D+ Y E+  F+  + ++      Y RT E   +WF P  VWE+RGA+ T+SPVH A +G V   RG S+RFPRF++  SD+  E+ +T+  IA++FR Q R++DV+
Sbjct:   60 YGNGRKAGWYSPFLMGCYNPDTEEFQSVCRVMSGFSDSFYIEMKEFFSGD-KIFNKKPHYYRTAEVADMWFSPEVVWEIRGADFTVSPVHHAAIGSVHPSRGISVRFPRFIRCLSDRKPEECSTSADIADMFRAQTRKMDVN 200          

HSP 2 Score: 72.7886 bits (177), Expect = 1.382e-11
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0
Query:   33 YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSC 83
            Y PSKRTD+WLKVKRDYVEGL D+LDLVPIGAWY      +G+ +P L  C
Sbjct:   27 YTPSKRTDAWLKVKRDYVEGLSDSLDLVPIGAWY-GNGRKAGWYSPFLMGC 76          
The following BLAST results are available for this feature:
BLAST of EWM24924.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106552|gb|EWM24924.1|0.000e+0100.00dna ligase [Nannochloropsis gaditana][more]
gi|553183001|ref|XP_005853823.1|0.000e+0100.00dna ligase, partial [Nannochloropsis gaditana CCMP... [more]
gi|585106551|gb|EWM24923.1|2.025e-123100.00dna ligase [Nannochloropsis gaditana][more]
gi|167523437|ref|XP_001746055.1|7.025e-4854.60hypothetical protein [Monosiga brevicollis MX1] >g... [more]
gi|873218389|emb|CEM39468.1|1.002e-4557.86unnamed protein product [Vitrella brassicaformis C... [more]
gi|944242147|gb|KQL06455.1|1.978e-4552.08hypothetical protein SETIT_0000392mg, partial [Set... [more]
gi|674937481|emb|CDX96133.1|3.889e-4554.29BnaA07g25980D [Brassica napus][more]
gi|1026763507|gb|OAE24541.1|4.314e-4550.98hypothetical protein AXG93_2415s1200 [Marchantia p... [more]
gi|552821656|ref|XP_005845908.1|6.725e-4557.34hypothetical protein CHLNCDRAFT_136511 [Chlorella ... [more]
gi|697185081|ref|XP_009601562.1|9.095e-4547.89PREDICTED: DNA ligase 6-like isoform X2 [Nicotiana... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5780rna5780Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications