rna5779, rna5779 (mRNA) Nannochloropsis gaditana

Overview
Namerna5779
Unique Namerna5779
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1304
Alignment locationCM002466.1:827180..828676 -

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Properties
Property NameValue
Productdna ligase
Orig transcript idgnl|cribi|Naga_100092g20.2146.mrna
Orig protein idgnl|cribi|Naga_100092g20.2146
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:827180..828676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100092g20gene5583Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5779rna5779-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24923.1cds5764Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5779 ID=rna5779|Name=rna5779|organism=Nannochloropsis gaditana|type=mRNA|length=1304bp
ATGCCCCTTCTCCCCTTCCGTATAGCACCATGTCTTGGCAGTAAATTGCC
CATTATTCCACCGTACAGCTTCTGGATAGTGCGGATATATTATTAAATCA
CGCATCTTATGTTGGACCCTTTTGTGTCGTAGGCAGGTGTGTGAATTGCC
TCAATGCATGTCACGAGGTTTCAGCTGAGCGTCCACCCGATCCATGAAGC
CCTGCTGAAGTTGGCAACGTACCATCACACAGGATGGCTCGTCTTTCTCT
CCTCGCATGCGCCGGCGTAGCAGCCCTCGCCACAGTAGCACACGGTTTTG
TCCCCCCCGTCCCCCGCTCATACACCCGCGGCCGCATGGCCATGGCTGCT
AAGAAAGACTTCTGGATTGCCCCATCCATTCTCTCTGCCGACTTTGCCAA
GCTTGGACAAGAGGTTGACAACGTGTTGGCGGCGGGGGCCGACATTGTGC
ATTTCGACGTGATGGATAACCACTACGTGCCTAACTTGACCATTGGCCCC
ATGGTATGCAAAGCCCTCCGCGACCACGGCGTCACGGCACCCATTGACGT
ACATCTCATGGTCTCACCAGTGGATCGTATCATTCCTGATTTTGCGGATG
CCGGCGCCTCTTTCATCACTTTCCACCCCGAAGCCACCAATCACATCGAT
CGGACTCTGCAGTTGATCAAGAGCAAGGGGTGCAAATCTGGGTTGGTCTT
TAACCCGGCCACTCCCCTCTCCCTGGCACAGCATGTCTTGGACAAGGTGG
ACATCATTTTGCTCATGTCCGTGAACCCGGGCTTTGGGGGCCAATCCTTT
ATTCCGGAGACGTTGAAAAAATTGAAGGAGGCACGTAAAATGATCGACGA
GAGCGGGTACGACATTCGTCTGGAGGTGGACGGCGGTGTGGGCGTGGCGA
ACATCAAGGACATTGCGGAGGCGGGGGCAGATTTCTTTGTGGCGGGAAGC
GCGATCTTGAAGAACCCGCGGACGCAGGACGCTTACAAAGCCACCATTGA
TGCCATGCGCGCCGAACTGGCTAAGGTCCAGTAAAGCACGTCGTACAGGA
GACCTGGAAGGCTCCCCAGGGAGTGCTGAGCCGTGAATGATATTGCTGAT
TGCGCAGGGAAGGAGGGGTAGAAAGGCAAGGAGGGGATCGCAGAGGCTGA
CAAACAGGAGTCAAACAATGTGACAAACAAAAGGAAGGTTGTTACAGAAT
TCGATCCCACCGCATCCACAACCACTTTACTTTATTGCTCGATCTATGGT
TGCTCGATTCGTCTCGAAGGGTAGAAAGGGCTCGATGAAATACGTGCCAA
AATG
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protein sequence of rna5779

>rna5779-protein ID=rna5779-protein|Name=rna5779|organism=Nannochloropsis gaditana|type=polypeptide|length=241bp
MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYV
EGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGL
TDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELT
LSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQ
VRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL
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mRNA from alignment at CM002466.1:827180..828676-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5779 ID=rna5779|Name=rna5779|organism=Nannochloropsis gaditana|type=mRNA|length=1497bp|location=Sequence derived from alignment at CM002466.1:827180..828676- (Nannochloropsis gaditana)
CTCGGCGGAGGGCGTGAGGGTTCAAGTCTGCGTCTTTGCCTTTGACCTCC
TCTTCCTCAACGGCCAATCTTACGTGAAGGAGCCGCTCTCCTCGCGCCGG
GCTCGTCTCTATTCCTTGTTTGGGCCGTTGTTGGAGGGAGGGGAGGGAGG
GAGTGAGGGAGGCTTTGAAGGCCGCTTTGCGTTTGCTGCACACACGGAGA
CGAATGACCCCGAGAAGGTCCAGGAATTTTTCACCGAGGCACTGGAGGCT
GGCTGCGAGGGGATCATGGTCAGAAGCGAGGGAGTTTGAGATGGAGGGGA
GGAGGGAAGGCGGAAGTAGAATGTGCACGACTCAAGATATGGGAAAACAT
CCACTGTGAGAAGAGTGGGAGTAAAAGTAGGAGCGAACTAGGCTGGGGTC
CAGAGGACTTTACGGACCCCCCCTCCTCCTCCCTCCCCGTATCGCCTCCT
TCATCCCTCCGTCCTCATCCCTCCTCTCCGCTAGAGGCAACTCGAGCTTG
TCAGGGAATCTAATGTCGTGCTACTGCCACATGAGCCCTCACGCCCCGTC
TAATTTTCTTTCTTTCTTTTCCTCCATCTGTCCGCAGTGCAAGTCTTTGC
CCCACGAATACGAGCCCTCGAAAAGGACGGACTCCTGGCTCAAGGTCAAG
CGCGACTACGTGGAGGGGCTGCACGACACCCTCGACCTCGTCCCCATCGG
TGCCTGGTACGTCGCTTTCTCGTCCGGTTCCGGGTATACCACGCCCATCC
TTTTCTCATGCCGTTGTACCCGTCTTTGGCCTTTCTTCGCTCCATCATCT
CTCTGTGATATTGGCAGATCAACGGTGACGAAGATGAAGGTGCATTGCTA
TGTTACCATTTTCCTGAACCCTATTCCCCCCATCATCCCTCCTTTCTCTT
GTTCGTTCCCAAGGTGGGGCAATGGCCGCAAAGCAGGCTGGTTTTCTCCC
ATCCTCCTCGCGTGCTTTAACCCCGAAACCGATGAACTTCAATCACTTTG
TCGGTGCATGTCGGGGCTGACGGACGCCATGTACACCGAGCTGACCGCGT
TTTACCAGGAAGAAGGCCGCTTGTTGGAGAATCCCAAGTCATACGTCAGG
ACAGGAGAGACATGTGCGGTGTGGTTCGAGCCTTGCCAAGTGTGGGAGGT
ACGCGGGGCAGAATTGACCCTGTCTCCAGTCCACAAGGCGGGGGTGGGCA
TCGTGGATGCCCAACGAGGATTCTCCTTGAGGTTTCCCAGATTTTTAAAG
ATACGAAGCGATAAGGGAGTGGAAGACGCCACGACTGCAGGCCAAATAGC
GGAGTTGTTCCGAATGCAAGTGCGGAGGGTGGACGTGGATGGGGATGATA
AGGACGGGGGAAGGAAGAAAGGAGGGGCAATGAACGGCAAAGAGAAGGAA
GAGGCAGTAGAGGAGCGAGAGGAGGAATGGGAAGACATTTTGTAAGTTTT
AAAAAGCAAGTAATGTAAAAAGACCGGAACGCAAGCGTTATTGAAAA
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Coding sequence (CDS) from alignment at CM002466.1:827180..828676-

>rna5779 ID=rna5779|Name=rna5779|organism=Nannochloropsis gaditana|type=CDS|length=1452bp|location=Sequence derived from alignment at CM002466.1:827180..828676- (Nannochloropsis gaditana)
GTGGGGCAATGGCCGCAAAGCAGGCTGGTTTTCTCCCATCCTCCTCGCGT
GCTTTAACCCCGAAACCGATGAACTTCAATCACTTTGTCGGTGCATGTCG
GGGCTGACGGACGCCATGTACACCGAGCTGACCGCGTTTTACCAGGAAGA
AGGCCGCTTGTTGGAGAATCCCAAGTCATACGTCAGGACAGGAGAGACAT
GTGCGGTGTGGTTCGAGCCTTGCCAAGTGTGGGAGGTACGCGGGGCAGAA
TTGACCCTGTCTCCAGTCCACAAGGCGGGGGTGGGCATCGTGGATGCCCA
ACGAGGATTCTCCTTGAGGTTTCCCAGATTTTTAAAGATACGAAGCGATA
AGGGAGTGGAAGACGCCACGACTGCAGGCCAAATAGCGGAGTTGTTCCGA
ATGCAAGTGCGGAGGGTGGACGTGGATGGGGATGATAAGGACGGGGGAAG
GAAGAAAGGAGGGGCAATGAACGGCAAAGAGAAGGAAGAGGCAGTAGAGG
AGCGAGAGGAGGAATGGGAAGACATTTTGTAAATGTCGTGCTACTGCCAC
ATGAGCCCTCACGCCCCGTCTAATTTTCTTTCTTTCTTTTCCTCCATCTG
TCCGCAGTGCAAGTCTTTGCCCCACGAATACGAGCCCTCGAAAAGGACGG
ACTCCTGGCTCAAGGTCAAGCGCGACTACGTGGAGGGGCTGCACGACACC
CTCGACCTCGTCCCCATCGGTGCCTGGTGGGGCAATGGCCGCAAAGCAGG
CTGGTTTTCTCCCATCCTCCTCGCGTGCTTTAACCCCGAAACCGATGAAC
TTCAATCACTTTGTCGGTGCATGTCGGGGCTGACGGACGCCATGTACACC
GAGCTGACCGCGTTTTACCAGGAAGAAGGCCGCTTGTTGGAGAATCCCAA
GTCATACGTCAGGACAGGAGAGACATGTGCGGTGTGGTTCGAGCCTTGCC
AAGTGTGGGAGGTACGCGGGGCAGAATTGACCCTGTCTCCAGTCCACAAG
GCGGGGGTGGGCATCGTGGATGCCCAACGAGGATTCTCCTTGAGGTTTCC
CAGATTTTTAAAGATACGAAGCGATAAGGGAGTGGAAGACGCCACGACTG
CAGGCCAAATAGCGGAGTTGTTCCGAATGCAAGTGCGGAGGGTGGACGTG
GATGGGGATGATAAGGACGGGGGAAGGAAGAAAGGAGGGGCAATGAACGG
CAAAGAGAAGGAAGAGGCAGTAGAGGAGCGAGAGGAGGAATGGGAAGACA
TTTTGTAAATGTCGTGCTACTGCCACATGAGCCCTCACGCCCCGTCTAAT
TTTCTTTCTTTCTTTTCCTCCATCTGTCCGCAGTGCAAGTCTTTGCCCCA
CGAATACGAGCCCTCGAAAAGGACGGACTCCTGGCTCAAGGTCAAGCGCG
ACTACGTGGAGGGGCTGCACGACACCCTCGACCTCGTCCCCATCGGTGCC
TG
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Synonyms
Publications