EWM24923.1, cds5764 (CDS) Nannochloropsis gaditana

Overview
NameEWM24923.1
Unique Namecds5764
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:827971..828164 -
Alignment locationCM002466.1:827232..827763 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24923.1
Productdna ligase
Orig transcript idgnl|cribi|Naga_100092g20.2146.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:827971..828164 -
CM002466.1supercontigCM002466.1:827232..827763 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006310DNA recombination
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0003910DNA ligase (ATP) activity
Vocabulary: INTERPRO
TermDefinition
IPR012310DNA_ligase_ATP-dep_cent
IPR012309DNA_ligase_ATP-dep_C
IPR012340NA-bd_OB-fold
Homology
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|585106551|gb|EWM24923.1| (dna ligase [Nannochloropsis gaditana])

HSP 1 Score: 503.056 bits (1294), Expect = 2.803e-180
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0
Query:    1 MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL 241
            MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL
Sbjct:    1 MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL 241          
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|585106552|gb|EWM24924.1| (dna ligase [Nannochloropsis gaditana])

HSP 1 Score: 362.073 bits (928), Expect = 1.574e-123
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
Query:   66 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL 241
            WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL
Sbjct:  135 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL 310          

HSP 2 Score: 152.91 bits (385), Expect = 1.711e-41
Identity = 70/83 (84.34%), Postives = 75/83 (90.36%), Query Frame = 0
Query:    1 MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWW-GNGRKAGWFSPILLAC 82
            MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAW+      +G+ +PIL +C
Sbjct:    1 MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSC 83          
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|553183001|ref|XP_005853823.1| (dna ligase, partial [Nannochloropsis gaditana CCMP526] >gi|553190989|ref|XP_005855307.1| dna ligase, partial [Nannochloropsis gaditana CCMP526] >gi|422293754|gb|EKU21054.1| dna ligase, partial [Nannochloropsis gaditana CCMP526] >gi|422295238|gb|EKU22537.1| dna ligase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 259.996 bits (663), Expect = 3.754e-84
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query:   66 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATT 189
            WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATT
Sbjct:  126 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATT 249          

HSP 2 Score: 130.183 bits (326), Expect = 1.954e-33
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 0
Query:   10 HAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWW-GNGRKAGWFSPILLAC 82
            HAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAW+      +G+ +PIL +C
Sbjct:    1 HAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSC 74          
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|698452827|ref|XP_009779812.1| (PREDICTED: DNA ligase 1-like isoform X1 [Nicotiana sylvestris])

HSP 1 Score: 227.254 bits (578), Expect = 1.478e-70
Identity = 99/175 (56.57%), Postives = 131/175 (74.86%), Query Frame = 0
Query:   33 YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVD 207
            Y PSKRTD+WLKVKRDYVEGL D+LDLVPIGAW+GNGRKAGW+SP L+AC+NP+T+E QS+CR MSG +D+ Y E+  F+  + ++      Y RT E   +WF P  VWE+RGA+ T+SPVH A +G V   RG S+RFPRF++  SD+  E+ +T+  IA++FR Q RR+DV+
Sbjct:  119 YTPSKRTDAWLKVKRDYVEGLSDSLDLVPIGAWYGNGRKAGWYSPFLMACYNPDTEEFQSVCRVMSGFSDSFYIEMEEFFSGD-KIFNKKPHYYRTAEVADMWFSPEVVWEIRGADFTVSPVHHAAIGSVHPSRGISVRFPRFIRCLSDRKPEECSTSADIADMFRSQTRRMDVN 292          
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|698452831|ref|XP_009779813.1| (PREDICTED: DNA ligase 1-like isoform X2 [Nicotiana sylvestris])

HSP 1 Score: 226.868 bits (577), Expect = 1.788e-70
Identity = 99/175 (56.57%), Postives = 131/175 (74.86%), Query Frame = 0
Query:   33 YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVD 207
            Y PSKRTD+WLKVKRDYVEGL D+LDLVPIGAW+GNGRKAGW+SP L+AC+NP+T+E QS+CR MSG +D+ Y E+  F+  + ++      Y RT E   +WF P  VWE+RGA+ T+SPVH A +G V   RG S+RFPRF++  SD+  E+ +T+  IA++FR Q RR+DV+
Sbjct:  116 YTPSKRTDAWLKVKRDYVEGLSDSLDLVPIGAWYGNGRKAGWYSPFLMACYNPDTEEFQSVCRVMSGFSDSFYIEMEEFFSGD-KIFNKKPHYYRTAEVADMWFSPEVVWEIRGADFTVSPVHHAAIGSVHPSRGISVRFPRFIRCLSDRKPEECSTSADIADMFRSQTRRMDVN 289          
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|697185081|ref|XP_009601562.1| (PREDICTED: DNA ligase 6-like isoform X2 [Nicotiana tomentosiformis])

HSP 1 Score: 223.016 bits (567), Expect = 2.919e-70
Identity = 97/175 (55.43%), Postives = 130/175 (74.29%), Query Frame = 0
Query:   33 YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVD 207
            Y PSKRTD+WLKVKRDYVEGL D+LDLVPIGAW+GNGRKAGW+SP L+ C+NP+T+E QS+CR MSG +D+ Y E+  F+  + ++      Y RT E   +WF P  VWE+RGA+ T+SPVH A +G V   RG S+RFPRF++  SD+  E+ +T+  IA++FR Q R++DV+
Sbjct:   27 YTPSKRTDAWLKVKRDYVEGLSDSLDLVPIGAWYGNGRKAGWYSPFLMGCYNPDTEEFQSVCRVMSGFSDSFYIEMKEFFSGD-KIFNKKPHYYRTAEVADMWFSPEVVWEIRGADFTVSPVHHAAIGSVHPSRGISVRFPRFIRCLSDRKPEECSTSADIADMFRAQTRKMDVN 200          
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|697185079|ref|XP_009601561.1| (PREDICTED: DNA ligase 6-like isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 223.787 bits (569), Expect = 3.174e-70
Identity = 97/175 (55.43%), Postives = 130/175 (74.29%), Query Frame = 0
Query:   33 YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVD 207
            Y PSKRTD+WLKVKRDYVEGL D+LDLVPIGAW+GNGRKAGW+SP L+ C+NP+T+E QS+CR MSG +D+ Y E+  F+  + ++      Y RT E   +WF P  VWE+RGA+ T+SPVH A +G V   RG S+RFPRF++  SD+  E+ +T+  IA++FR Q R++DV+
Sbjct:   45 YTPSKRTDAWLKVKRDYVEGLSDSLDLVPIGAWYGNGRKAGWYSPFLMGCYNPDTEEFQSVCRVMSGFSDSFYIEMKEFFSGD-KIFNKKPHYYRTAEVADMWFSPEVVWEIRGADFTVSPVHHAAIGSVHPSRGISVRFPRFIRCLSDRKPEECSTSADIADMFRAQTRKMDVN 218          
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|1045382983|dbj|GAU32764.1| (hypothetical protein TSUD_323320, partial [Trifolium subterraneum])

HSP 1 Score: 223.787 bits (569), Expect = 5.938e-70
Identity = 103/178 (57.87%), Postives = 134/178 (75.28%), Query Frame = 0
Query:   29 LPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDV 206
            + + Y PSKR+D WLKVKRDYVEGL+DTLDLVPIGAW GNGRKAG+  P L+ACFNPET+E QS+CR MSG +D+ Y E+  F+ E+  LL+ P  Y +TGET  +WF P  VWE+RGA+ T+SPVH A +G+V   RG S+RFPRF+   SD+  E+ +TA  I E+F++Q R++DV
Sbjct:   59 IDYGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGY--PFLMACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSEDKMLLKKPP-YYQTGETPDMWFCPQLVWEIRGADFTVSPVHHAAIGLVHPSRGISVRFPRFISSASDRNQEECSTAADIVEMFQLQTRKMDV 233          
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|674937481|emb|CDX96133.1| (BnaA07g25980D [Brassica napus])

HSP 1 Score: 225.328 bits (573), Expect = 1.369e-69
Identity = 104/174 (59.77%), Postives = 132/174 (75.86%), Query Frame = 0
Query:   33 YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDV 206
            Y P+KR+DSWLKVKRDYV+GL DTLDLVPIGAW GNGRKAGW+SP L+AC+NPET+E QS+CR MSG +DA Y E+  FY E+  L + P  Y RTGET  +WF    VWE+RGA+LT+SPVH A +G+V   RG S+RFPRF+  R D+  E+ +TA  IAE+F  Q R++++
Sbjct:  147 YCPTKRSDSWLKVKRDYVDGLGDTLDLVPIGAWHGNGRKAGWYSPFLMACYNPETEEFQSVCRVMSGFSDAFYIEMKEFYPEDKILAKKP-PYYRTGETPDMWFPAEVVWEIRGADLTVSPVHSAALGLVHPSRGISVRFPRFICKRVDRNPEECSTAADIAEMFHAQTRKMNI 319          
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|147767218|emb|CAN66728.1| (hypothetical protein VITISV_041957 [Vitis vinifera])

HSP 1 Score: 222.246 bits (565), Expect = 5.019e-69
Identity = 98/174 (56.32%), Postives = 131/174 (75.29%), Query Frame = 0
Query:   33 YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDV 206
            Y PSKRTD+WLKVKRDYVEGL+D+LDLVPIGAW GNGRKAGW+SP L+AC+NP+T+E QS+CR MSG +D  Y E+  F+ E+  L + P  Y +T E   +WF P  +WE+RGA+ T+SPVH+A +G+V   RG S+RFPRF++   D+  E+ +TA  IA++F  Q R++DV
Sbjct:   96 YSPSKRTDTWLKVKRDYVEGLNDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPDTEEFQSVCRVMSGFSDNFYKEMKEFFNEDKILSKKP-PYYQTAELPDMWFTPELIWEIRGADFTVSPVHQAAIGLVHPSRGISVRFPRFIRPIMDRRPEECSTAADIADMFHSQTRKMDV 268          
The following BLAST results are available for this feature:
BLAST of EWM24923.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106551|gb|EWM24923.1|2.803e-180100.00dna ligase [Nannochloropsis gaditana][more]
gi|585106552|gb|EWM24924.1|1.574e-123100.00dna ligase [Nannochloropsis gaditana][more]
gi|553183001|ref|XP_005853823.1|3.754e-84100.00dna ligase, partial [Nannochloropsis gaditana CCMP... [more]
gi|698452827|ref|XP_009779812.1|1.478e-7056.57PREDICTED: DNA ligase 1-like isoform X1 [Nicotiana... [more]
gi|698452831|ref|XP_009779813.1|1.788e-7056.57PREDICTED: DNA ligase 1-like isoform X2 [Nicotiana... [more]
gi|697185081|ref|XP_009601562.1|2.919e-7055.43PREDICTED: DNA ligase 6-like isoform X2 [Nicotiana... [more]
gi|697185079|ref|XP_009601561.1|3.174e-7055.43PREDICTED: DNA ligase 6-like isoform X1 [Nicotiana... [more]
gi|1045382983|dbj|GAU32764.1|5.938e-7057.87hypothetical protein TSUD_323320, partial [Trifoli... [more]
gi|674937481|emb|CDX96133.1|1.369e-6959.77BnaA07g25980D [Brassica napus][more]
gi|147767218|emb|CAN66728.1|5.019e-6956.32hypothetical protein VITISV_041957 [Vitis vinifera... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5779rna5779Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications