EWM24923.1, cds5764 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|585106551|gb|EWM24923.1| (dna ligase [Nannochloropsis gaditana]) HSP 1 Score: 503.056 bits (1294), Expect = 2.803e-180 Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0
Query: 1 MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL 241
MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL
Sbjct: 1 MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL 241
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|585106552|gb|EWM24924.1| (dna ligase [Nannochloropsis gaditana]) HSP 1 Score: 362.073 bits (928), Expect = 1.574e-123 Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
Query: 66 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL 241
WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL
Sbjct: 135 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVDGDDKDGGRKKGGAMNGKEKEEAVEEREEEWEDIL 310 HSP 2 Score: 152.91 bits (385), Expect = 1.711e-41 Identity = 70/83 (84.34%), Postives = 75/83 (90.36%), Query Frame = 0
Query: 1 MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWW-GNGRKAGWFSPILLAC 82
MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAW+ +G+ +PIL +C
Sbjct: 1 MSCYCHMSPHAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSC 83
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|553183001|ref|XP_005853823.1| (dna ligase, partial [Nannochloropsis gaditana CCMP526] >gi|553190989|ref|XP_005855307.1| dna ligase, partial [Nannochloropsis gaditana CCMP526] >gi|422293754|gb|EKU21054.1| dna ligase, partial [Nannochloropsis gaditana CCMP526] >gi|422295238|gb|EKU22537.1| dna ligase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 259.996 bits (663), Expect = 3.754e-84 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query: 66 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATT 189
WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATT
Sbjct: 126 WGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATT 249 HSP 2 Score: 130.183 bits (326), Expect = 1.954e-33 Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 0
Query: 10 HAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWW-GNGRKAGWFSPILLAC 82
HAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAW+ +G+ +PIL +C
Sbjct: 1 HAPSNFLSFFSSICPQCKSLPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWYVAFSSGSGYTTPILFSC 74
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|698452827|ref|XP_009779812.1| (PREDICTED: DNA ligase 1-like isoform X1 [Nicotiana sylvestris]) HSP 1 Score: 227.254 bits (578), Expect = 1.478e-70 Identity = 99/175 (56.57%), Postives = 131/175 (74.86%), Query Frame = 0
Query: 33 YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVD 207
Y PSKRTD+WLKVKRDYVEGL D+LDLVPIGAW+GNGRKAGW+SP L+AC+NP+T+E QS+CR MSG +D+ Y E+ F+ + ++ Y RT E +WF P VWE+RGA+ T+SPVH A +G V RG S+RFPRF++ SD+ E+ +T+ IA++FR Q RR+DV+
Sbjct: 119 YTPSKRTDAWLKVKRDYVEGLSDSLDLVPIGAWYGNGRKAGWYSPFLMACYNPDTEEFQSVCRVMSGFSDSFYIEMEEFFSGD-KIFNKKPHYYRTAEVADMWFSPEVVWEIRGADFTVSPVHHAAIGSVHPSRGISVRFPRFIRCLSDRKPEECSTSADIADMFRSQTRRMDVN 292
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|698452831|ref|XP_009779813.1| (PREDICTED: DNA ligase 1-like isoform X2 [Nicotiana sylvestris]) HSP 1 Score: 226.868 bits (577), Expect = 1.788e-70 Identity = 99/175 (56.57%), Postives = 131/175 (74.86%), Query Frame = 0
Query: 33 YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVD 207
Y PSKRTD+WLKVKRDYVEGL D+LDLVPIGAW+GNGRKAGW+SP L+AC+NP+T+E QS+CR MSG +D+ Y E+ F+ + ++ Y RT E +WF P VWE+RGA+ T+SPVH A +G V RG S+RFPRF++ SD+ E+ +T+ IA++FR Q RR+DV+
Sbjct: 116 YTPSKRTDAWLKVKRDYVEGLSDSLDLVPIGAWYGNGRKAGWYSPFLMACYNPDTEEFQSVCRVMSGFSDSFYIEMEEFFSGD-KIFNKKPHYYRTAEVADMWFSPEVVWEIRGADFTVSPVHHAAIGSVHPSRGISVRFPRFIRCLSDRKPEECSTSADIADMFRSQTRRMDVN 289
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|697185081|ref|XP_009601562.1| (PREDICTED: DNA ligase 6-like isoform X2 [Nicotiana tomentosiformis]) HSP 1 Score: 223.016 bits (567), Expect = 2.919e-70 Identity = 97/175 (55.43%), Postives = 130/175 (74.29%), Query Frame = 0
Query: 33 YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVD 207
Y PSKRTD+WLKVKRDYVEGL D+LDLVPIGAW+GNGRKAGW+SP L+ C+NP+T+E QS+CR MSG +D+ Y E+ F+ + ++ Y RT E +WF P VWE+RGA+ T+SPVH A +G V RG S+RFPRF++ SD+ E+ +T+ IA++FR Q R++DV+
Sbjct: 27 YTPSKRTDAWLKVKRDYVEGLSDSLDLVPIGAWYGNGRKAGWYSPFLMGCYNPDTEEFQSVCRVMSGFSDSFYIEMKEFFSGD-KIFNKKPHYYRTAEVADMWFSPEVVWEIRGADFTVSPVHHAAIGSVHPSRGISVRFPRFIRCLSDRKPEECSTSADIADMFRAQTRKMDVN 200
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|697185079|ref|XP_009601561.1| (PREDICTED: DNA ligase 6-like isoform X1 [Nicotiana tomentosiformis]) HSP 1 Score: 223.787 bits (569), Expect = 3.174e-70 Identity = 97/175 (55.43%), Postives = 130/175 (74.29%), Query Frame = 0
Query: 33 YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDVD 207
Y PSKRTD+WLKVKRDYVEGL D+LDLVPIGAW+GNGRKAGW+SP L+ C+NP+T+E QS+CR MSG +D+ Y E+ F+ + ++ Y RT E +WF P VWE+RGA+ T+SPVH A +G V RG S+RFPRF++ SD+ E+ +T+ IA++FR Q R++DV+
Sbjct: 45 YTPSKRTDAWLKVKRDYVEGLSDSLDLVPIGAWYGNGRKAGWYSPFLMGCYNPDTEEFQSVCRVMSGFSDSFYIEMKEFFSGD-KIFNKKPHYYRTAEVADMWFSPEVVWEIRGADFTVSPVHHAAIGSVHPSRGISVRFPRFIRCLSDRKPEECSTSADIADMFRAQTRKMDVN 218
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|1045382983|dbj|GAU32764.1| (hypothetical protein TSUD_323320, partial [Trifolium subterraneum]) HSP 1 Score: 223.787 bits (569), Expect = 5.938e-70 Identity = 103/178 (57.87%), Postives = 134/178 (75.28%), Query Frame = 0
Query: 29 LPHEYEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDV 206
+ + Y PSKR+D WLKVKRDYVEGL+DTLDLVPIGAW GNGRKAG+ P L+ACFNPET+E QS+CR MSG +D+ Y E+ F+ E+ LL+ P Y +TGET +WF P VWE+RGA+ T+SPVH A +G+V RG S+RFPRF+ SD+ E+ +TA I E+F++Q R++DV
Sbjct: 59 IDYGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGY--PFLMACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSEDKMLLKKPP-YYQTGETPDMWFCPQLVWEIRGADFTVSPVHHAAIGLVHPSRGISVRFPRFISSASDRNQEECSTAADIVEMFQLQTRKMDV 233
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|674937481|emb|CDX96133.1| (BnaA07g25980D [Brassica napus]) HSP 1 Score: 225.328 bits (573), Expect = 1.369e-69 Identity = 104/174 (59.77%), Postives = 132/174 (75.86%), Query Frame = 0
Query: 33 YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDV 206
Y P+KR+DSWLKVKRDYV+GL DTLDLVPIGAW GNGRKAGW+SP L+AC+NPET+E QS+CR MSG +DA Y E+ FY E+ L + P Y RTGET +WF VWE+RGA+LT+SPVH A +G+V RG S+RFPRF+ R D+ E+ +TA IAE+F Q R++++
Sbjct: 147 YCPTKRSDSWLKVKRDYVDGLGDTLDLVPIGAWHGNGRKAGWYSPFLMACYNPETEEFQSVCRVMSGFSDAFYIEMKEFYPEDKILAKKP-PYYRTGETPDMWFPAEVVWEIRGADLTVSPVHSAALGLVHPSRGISVRFPRFICKRVDRNPEECSTAADIAEMFHAQTRKMNI 319
BLAST of EWM24923.1 vs. NCBI_GenBank
Match: gi|147767218|emb|CAN66728.1| (hypothetical protein VITISV_041957 [Vitis vinifera]) HSP 1 Score: 222.246 bits (565), Expect = 5.019e-69 Identity = 98/174 (56.32%), Postives = 131/174 (75.29%), Query Frame = 0
Query: 33 YEPSKRTDSWLKVKRDYVEGLHDTLDLVPIGAWWGNGRKAGWFSPILLACFNPETDELQSLCRCMSGLTDAMYTELTAFYQEEGRLLENPKSYVRTGETCAVWFEPCQVWEVRGAELTLSPVHKAGVGIVDAQRGFSLRFPRFLKIRSDKGVEDATTAGQIAELFRMQVRRVDV 206
Y PSKRTD+WLKVKRDYVEGL+D+LDLVPIGAW GNGRKAGW+SP L+AC+NP+T+E QS+CR MSG +D Y E+ F+ E+ L + P Y +T E +WF P +WE+RGA+ T+SPVH+A +G+V RG S+RFPRF++ D+ E+ +TA IA++F Q R++DV
Sbjct: 96 YSPSKRTDTWLKVKRDYVEGLNDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPDTEEFQSVCRVMSGFSDNFYKEMKEFFNEDKILSKKP-PYYQTAELPDMWFTPELIWEIRGADFTVSPVHQAAIGLVHPSRGISVRFPRFIRPIMDRRPEECSTAADIADMFHSQTRKMDV 268 The following BLAST results are available for this feature:
BLAST of EWM24923.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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