rna5776, rna5776 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5776
Unique Name	rna5776
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3469
Alignment location	CM002466.1:820956..822405 +

Link to JBrowse

Properties


Property Name	Value
Product	ankyrin repeat-containing protein
Orig transcript id	gnl\|cribi\|Naga_100092g16.2141.mrna
Orig protein id	gnl\|cribi\|Naga_100092g16.2141
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:820956..822405 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100092g16	gene5580	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5776	rna5776-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24918.1	cds5761	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:820956..822405+
coding sequence from alignment at CM002466.1:820956..822405+

mRNA sequence

>rna5776 ID=rna5776|Name=rna5776|organism=Nannochloropsis gaditana|type=mRNA|length=3469bp
TAGGCCTCTCATTGATAAGAGCCTGGATACGGAGGGGAAATGGTTTTTGA
AGCTTCGTCAAGTACTTGTAAGACACGTTCCCAACGTAGGATGGCGCCCA
CCTTACTCTTTCAGATTATGATGGTTTTCTCATGCCTGTGGCCTACCGCA
AGCGTTGTTGGGAGCAAAGCGCCTTTTCTTCCGAGGCCCTTGGAATTTTG
GGGCCACCAGGCTTCTTCTGGACACTCTATTCCTTTTTGGGGAATCCGAG
GCGGTGCAAATGGACCGAAAGGCACTTTTCAAACGAGTGACCATATCCCT
GCTGCCCCACGAGACGACCGTCCTCGTTCACCAAGACAAGACAGAAGCGG
CGACGAAATTGACCACAACGCGAAGCATTTTGATCATCAAAGCTCTAAAA
CTAGTGCGTCCCCCTCGGTCCAGGGCGTGCAGGCAAACTCCATCCCCTCC
AACCCTCCGGGCATGGTGTGCGATGGAGACGTCTGCCACCTGCCTGACGC
AAAGCACTATGCTCCCTCTCCCGTCACAGCACCCGCTTACACTGATAAAC
CACACGCGGATTACTTTTCGATGCAAGTGCAGGAATTTGTGGAGAAGGGG
CACACGGCAGCGGAGGCGGAGAAAGCTTTGCACGAAGCCCGGTACGATGT
GGCTGTCGCGGCGGCGATACTGGAAGGAAGGAGGCCGTCCGTGGGGAAGG
CAACCTCCGAGTCGCATACTATCCTCGAGAGGGAGCAAAGGACGCCACCA
ACAGAAAATACCGCCGTGGAAACGTCCCCTACCGATTCATTCCGTGCGGG
CCCAGTGGTAGGGGAGTCGCCCCCCCCCCCCCCCTCCGTCCCTCCTTCGG
TACCCTCGCCTGCCACCCCCACCACCCCCACTCCCTCCATTCCCGATGAA
GCACCAGCGCCTCTGCATTCTCTGGAGGTCAGTCCAGAAGCCGCCACTCC
TTCTCCAGGCACGGTCTCCGCCTCCCCCACTCCTTCTTCGCCCCCCCCTC
CCCCCGAGGCACCTCCCACTCCCGCCCCCGCCCCCTCCCCTGCTCCAGAA
GAAGACACCGCCATCCCCCCCGCCTACGTGGACGGCGTGAATGCCCTGAT
TGGCAAAGGGCTGAGTCGGGAGGATGCCCTCGAGCTTCTGACTCTGGCTA
AGGGGGATCTCCCCACTGCCTTGGAGATCCTCGACCAGGACGCGATGGCC
AGGGACCTGGAGGCGGCTGTGGAGGAGATGGTGGGGGAAGGGTGGGACGA
GGACGTGGCGCGGCAGGCCCTCTTGGCGCAGCGGGAGAAGACCAAAGACC
TCCCTCCCCCGGCCCCTGTGGCGGGAACAGCCTCCCCCTCTCGGGGCCCT
CCCTCCGGTCCACTGCAGCCGCCACCCCCACCGACAAAGCCGGCCACCAA
GAAGCCGGCGACAACCCCCCCCGTTCCCCCCGCGGCGCACGCGGACGTGG
TCTTCGAAGTGACCGAGAGCGACCTGCAAAAGATCGTGATCGAGTCGCCC
GTGCCCGTCCTCCTGGATGTGTACGCAGAATGGTGCGGCCCCTGCAAACA
GCTGGGGCCCATGCTGGAAGCCATGGCCGTGAAGGCCGGAGGCTTGTTCC
GGCTCGCCAAGGTGGATTCGGACAAGAACCGAGGGATCAGCGAGATGCTC
GGCGTGCAGGCGCTCCCCTCGGTCTTTGCCTTCAGGGACGGGGCCCTCGT
CGACAACTTCGTCGGTATGCCCCAGCAAGCCACCCTGCAGGCATTCATGA
CGCGCCTCTTGATGCGAAGCCCCCGACCGCCCGTCGACCCCTTGAAAGAC
CCGCACGCCAAGACCGCGGAGGATTTGGAGAAAATGGGGAGCAAGCTGGC
GCATTTGGCAGGCCTGGCCGCTTTTGGGGCGGCTCGGAAGGAAAAACTAG
AACGGGCCGTGGACGCTTTGGTGACCGAGACTGTACGGGCAGGGGAGGAA
GGGAAGGAGGGACGGGACCCGGCGTCGGCGCTGCAGGCCCTGCGAACCGT
CAATGCCTACCTGAGCAATTTGATCAAGCACTTCAGCGGAGACCCCAAAT
ACCGGCACATCAACATGGAAAGGGAAGCGTTCCAAAACCGGTTGGGCGCC
TACCCCGCCGCGATTCGGATACTGGAGAAGGTGGGTTTCAACGACGAGGG
AGGCAAAGGCACGTTGGTCCTCGGGCATCGGAACCGAGCGCCTGTGATCG
CTGCCGAGCAGGTCATCGGAGGCTACCTGTCCCGGGTTCGGCGCGGCGGG
GCCGGCTCCACAGGCGGGGCTGCCGGCGCCAGTGGAGAGACCATGCCCAT
TTTCAGGAGCAAGTCTTTGCGACGGCCGCCTCCTGCCCCGGCTGCTCCTG
TGGCCAAGGCAGCCTCGGGCGGGGGGGAGAAGGGCCCGACGCAAGCCCCG
TCCTCGGCGGTCTCCCCGAAAGCCACAGCCCCTTCGCCCCCGTCGTCGAA
TTCAGGGTTGTCCCGGAAGGCTTTCACCGCCTTAGCCGTTCGGATGCCCG
ACGGGAGCATCTTCAAGCCGGGCCTGCGCGCGAACGCGACGCTGTCCAAG
CTGATGGCGGCCTTGCGGGCGGAGAGGCCCAAAGAAACGGGGCAAGTGCC
CGTGGGAGGGTTGAAGGTGGTGACGCGCGTGCCCGTTCTGAGGACCTACG
TGGAAGGAGGCCCCGAATCCGGGAAAAAATTGGGGGATTTGGAGCTTGGA
GGGGGGAAGGTAGTCCTTACTTTGGTGGTGACGAGGCCTGAGGAGGGATT
GAAGGAGGGAGGGAAGGAGGGAAAGCGGAAGGTAGTGTCCGCAGATGTTT
TGGCTGCAAAAGCAAAGATGAAGAAAGACAAGCCACGCCGAGGAGGAACG
CACACCTTGTTCTCGGAGGGGCACCTGGATGAAGCGCAGACGAAAGGGAA
CAGGTACTACGGGGGTGGATCGACGTATTTTGAGGCGGCGATAGACGAAG
AGGCAGAGAAGGGAGAGAAGGAAGGGACGGTAACGGAGGGGAAAGGCGTA
GGAAAAGGGAAGAAGGGAGGTGTTGAGAACAGAAGAGGGAAGGGCGAGGA
GACCAGTGACGTTGGCGGCGAGGGACAGGAAGAACAGGATAAGGATAAAA
AGGAGGACCTTGAGAAAGAGGTGTTTAATGACGACGAGGAGGAGGAAGAA
GAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGA
GGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGACGAAGAGG
ATGAGCTGGAGGAAGAGGAGAAGGACGACGAGGAGGACGAGGAAGAGGAG
GAAGAGGAGGACGACGAGGATGATGATGATGAGGAGGAGGAGGATGAAGA
GGGCGATGAGGAGGATGAGGACGATGAGGAGGAGGATGGGGAGGAGGAGG
ACGATTAGGGATGATCCAGTCCTATTCTCACGGACACGAAAAAGTACCAA
GCAAGCAAAGCGGCAAGAA

protein sequence of rna5776

>rna5776-protein ID=rna5776-protein|Name=rna5776|organism=Nannochloropsis gaditana|type=polypeptide|length=260bp
MQDKEHYPPKILQDPALKALTQQNPLCADCEAPHPDWVSLNLGVVVCLQC
SGVHRSLGVHVSKIRSLALDDVDPVDLALVSRLGNTRVNKVYEYQFPDGW
RKPRPHEDRSARAQYIKAKYVWKGFTCIVSDGVGSAAGENNGGRSEIAEA
IDLGVAGKAKDDKLGNSLMLVKAVMENNLEGALEALVQGADVDWTGGTEN
EKGRTPLHLAARQGDEVVEAVAFLVQNGANVGLRDRDDLTALDLATQGHH
ALTVQYLLKF

mRNA from alignment at CM002466.1:820956..822405+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5776 ID=rna5776|Name=rna5776|organism=Nannochloropsis gaditana|type=mRNA|length=1450bp|location=Sequence derived from alignment at CM002466.1:820956..822405+ (Nannochloropsis gaditana)
ATGCAGGTCCGTGCCAAGGGgctggcctccaccaccgccagtcACGTGTG
GATCCGCCGCTGGTTTGTCCTGGAAGGGAGCAGCCTGTACTACGTCCGGG
AGAGCAGCCACGACCCAGTGGGGGAGTCGATGGAGGGGTCGGAGCGGAGT
TTGGTGTGCGACGTAGTGCTGTCAAGCATTCGTGAGGTTCCCCTCCTGGG
CCACGGGACCAAGAGCCTGGGGGCGGGCAATGCCACCGAGGCACAGACCT
CCTCAGCCGTGCCTTACTGCCTGGAGATTTTTTCCGCGAACCGAAAACGC
TTGATTTTGCAAGCGGAGGGTCCAGAGGAATTGCGGGCTTGGCTCGAGGC
TTTCCGGCGTCGGCTCGAACGTCTGCTggtaggggggggcggcatTCCCC
CATGCCTCTCCCCTGGTCGAAGCAGCGCCTCGTCTTCGCCTGAGCGGTCG
GGCTCGAAAAGTCCGGGCGTGCTCGGGGGGAACTTGTCCCCCTTGAGGAT
TGCATCGGGTTTCAGCCGGGTCTGGCACAGCCCCGGAGCAGGGGCTCGGC
GGGACggagcaggggcgggggggtggggcggggagtggggaggggggcga
gatAACCGGGGTGGGGTGCGGCACAGTGGATTCCAGTCTGGACGTCCCCG
ACGCATACTTGTCGGTGGCCCAGGACAAGGAGCATTATCCGCCCAAAATC
CTCCAGGACCCTGCCTTGAAGGCCCTTACCCAGCAAAACCCCCTGTGTGC
CGACTGCGAGGCTCCCCACCCGGATTGGGTCTCCTTGAATCTAGGGGTGG
TCGTGTGCTTGCAGTGTTCAGGAGTGCACCGGTCTCTGGGCGTGCACGTG
AGTAAAATCCGGAGCTTGGCACTGGACGACGTGGATCCCGTGGACCTGGC
CCTTGTCTCTCGGCTGGGCAATACCCGAGTCAACAAGGTATATGAATACC
AGTTCCCGGACGGATGGCGAAAGCCACGGCCGCACGAGGATCGAAGCGCT
CGGGCCCAGTACATCAAGGCGAAATACGTCTGGAAAGGGTTCACGTGCAT
CGTGTCTGATGGCGTTGGGAGCGCAGCGGGCGAAAACAATGGAGGCAGAT
CAGAAATAGCAGAAGCTATAGATTTAGGAGTCGCGGGAAAGGCAAAAGAC
GACAAACTCGGTAATTCCCTGATGTTGGTTAAAGCTGTGATGGAGAACAA
TTTGGAAGGCGCCCTTGAGGCCCTGGTGCAAGGCGCAGACGTGGACTGGA
CGGGTGGAACCGAGAACGAGAAGGGACGGACCCCCCTGCATCTGGCGGCC
CGTCAAGGGGACGAAGTCGTGGAAGCGGTGGCTTTCCTGGtgcaaaatgg
cgcgaatgTGGGACTGCGGGATCGCGATGATCTGACCGCATTGGATTTGG
CCACTCAAGGCCACCACGCTCTAACTGTTCAGTATTTGCTGAAATTTTGA

Coding sequence (CDS) from alignment at CM002466.1:820956..822405+

>rna5776 ID=rna5776|Name=rna5776|organism=Nannochloropsis gaditana|type=CDS|length=1566bp|location=Sequence derived from alignment at CM002466.1:820956..822405+ (Nannochloropsis gaditana)
ATGCAGGACAAGGAGCATTATCCGCCCAAAATCCTCCAGGACCCTGCCTT
GAAGGCCCTTACCCAGCAAAACCCCCTGTGTGCCGACTGCGAGGCTCCCC
ACCCGGATTGGGTCTCCTTGAATCTAGGGGTGGTCGTGTGCTTGCAGTGT
TCAGGAGTGCACCGGTCTCTGGGCGTGCACGTGAGTAAAATCCGGAGCTT
GGCACTGGACGACGTGGATCCCGTGGACCTGGCCCTTGTCTCTCGGCTGG
GCAATACCCGAGTCAACAAGGTATATGAATACCAGTTCCCGGACGGATGG
CGAAAGCCACGGCCGCACGAGGATCGAAGCGCTCGGGCCCAGTACATCAA
GGCGAAATACGTCTGGAAAGGGTTCACGTGCATCGTGTCTGATGGCGTTG
GGAGCGCAGCGGGCGAAAACAATGGAGGCAGATCAGAAATAGCAGAAGCT
ATAGATTTAGGAGTCGCGGGAAAGGCAAAAGACGACAAACTCGGTAATTC
CCTGATGTTGGTTAAAGCTGTGATGGAGAACAATTTGGAAGGCGCCCTTG
AGGCCCTGGTGCAAGGCGCAGACGTGGACTGGACGGGTGGAACCGAGAAC
GAGAAGGGACGGACCCCCCTGCATCTGGCGGCCCGTCAAGGGGACGAAGT
CGTGGAAGCGGTGGCTTTCCTGGtgcaaaatggcgcgaatgTGGGACTGC
GGGATCGCGATGATCTGACCGCATTGGATTTGGCCACTCAAGGCCACCAC
GCTCTAACTGTTCAGTATTTGCTGAAATTTTGAATGCAGGACAAGGAGCA
TTATCCGCCCAAAATCCTCCAGGACCCTGCCTTGAAGGCCCTTACCCAGC
AAAACCCCCTGTGTGCCGACTGCGAGGCTCCCCACCCGGATTGGGTCTCC
TTGAATCTAGGGGTGGTCGTGTGCTTGCAGTGTTCAGGAGTGCACCGGTC
TCTGGGCGTGCACGTGAGTAAAATCCGGAGCTTGGCACTGGACGACGTGG
ATCCCGTGGACCTGGCCCTTGTCTCTCGGCTGGGCAATACCCGAGTCAAC
AAGGTATATGAATACCAGTTCCCGGACGGATGGCGAAAGCCACGGCCGCA
CGAGGATCGAAGCGCTCGGGCCCAGTACATCAAGGCGAAATACGTCTGGA
AAGGGTTCACGTGCATCGTGTCTGATGGCGTTGGGAGCGCAGCGGGCGAA
AACAATGGAGGCAGATCAGAAATAGCAGAAGCTATAGATTTAGGAGTCGC
GGGAAAGGCAAAAGACGACAAACTCGGTAATTCCCTGATGTTGGTTAAAG
CTGTGATGGAGAACAATTTGGAAGGCGCCCTTGAGGCCCTGGTGCAAGGC
GCAGACGTGGACTGGACGGGTGGAACCGAGAACGAGAAGGGACGGACCCC
CCTGCATCTGGCGGCCCGTCAAGGGGACGAAGTCGTGGAAGCGGTGGCTT
TCCTGGtgcaaaatggcgcgaatgTGGGACTGCGGGATCGCGATGATCTG
ACCGCATTGGATTTGGCCACTCAAGGCCACCACGCTCTAACTGTTCAGTA
TTTGCTGAAATTTTGA

Synonyms

Publications