EWM24918.1, cds5761 (CDS) Nannochloropsis gaditana

Overview
NameEWM24918.1
Unique Namecds5761
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:820956..820961 +
Alignment locationCM002466.1:821629..822405 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24918.1
Productankyrin repeat-containing protein
Orig transcript idgnl|cribi|Naga_100092g16.2141.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:820956..820961 +
CM002466.1supercontigCM002466.1:821629..822405 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005096GTPase activator activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
IPR001164ArfGAP
IPR002110Ankyrin_rpt
Homology
BLAST of EWM24918.1 vs. NCBI_GenBank
Match: gi|585106546|gb|EWM24918.1| (ankyrin repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 534.258 bits (1375), Expect = 0.000e+0
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
Query:    1 MQDKEHYPPKILQDPALKALTQQNPLCADCEAPHPDWVSLNLGVVVCLQCSGVHRSLGVHVSKIRSLALDDVDPVDLALVSRLGNTRVNKVYEYQFPDGWRKPRPHEDRSARAQYIKAKYVWKGFTCIVSDGVGSAAGENNGGRSEIAEAIDLGVAGKAKDDKLGNSLMLVKAVMENNLEGALEALVQGADVDWTGGTENEKGRTPLHLAARQGDEVVEAVAFLVQNGANVGLRDRDDLTALDLATQGHHALTVQYLLKF 260
            MQDKEHYPPKILQDPALKALTQQNPLCADCEAPHPDWVSLNLGVVVCLQCSGVHRSLGVHVSKIRSLALDDVDPVDLALVSRLGNTRVNKVYEYQFPDGWRKPRPHEDRSARAQYIKAKYVWKGFTCIVSDGVGSAAGENNGGRSEIAEAIDLGVAGKAKDDKLGNSLMLVKAVMENNLEGALEALVQGADVDWTGGTENEKGRTPLHLAARQGDEVVEAVAFLVQNGANVGLRDRDDLTALDLATQGHHALTVQYLLKF
Sbjct:    1 MQDKEHYPPKILQDPALKALTQQNPLCADCEAPHPDWVSLNLGVVVCLQCSGVHRSLGVHVSKIRSLALDDVDPVDLALVSRLGNTRVNKVYEYQFPDGWRKPRPHEDRSARAQYIKAKYVWKGFTCIVSDGVGSAAGENNGGRSEIAEAIDLGVAGKAKDDKLGNSLMLVKAVMENNLEGALEALVQGADVDWTGGTENEKGRTPLHLAARQGDEVVEAVAFLVQNGANVGLRDRDDLTALDLATQGHHALTVQYLLKF 260          
BLAST of EWM24918.1 vs. NCBI_GenBank
Match: gi|569414493|gb|ETO25943.1| (hypothetical protein RFI_11195 [Reticulomyxa filosa])

HSP 1 Score: 153.295 bits (386), Expect = 9.301e-39
Identity = 89/238 (37.39%), Postives = 131/238 (55.04%), Query Frame = 0
Query:   13 QDPALKALTQQ-NPLCADCEAPHPDWVSLNLGVVVCLQCSGVHRSLGVHVSKIRSLALDDVDPVDLALVSRLGNTRVNKVYEYQFPDGWRKPRPHEDRSARAQYIKAKYVWKGFTCIVSDGVGSAAGENNGGRSEIAEAIDLGVAGKAKDDKLGNSLMLVKAVMENNLEGALEALVQGADVDWTGGTENEKGRTPLHLAARQGDEVVEAVAFLVQNGANVGLRDRDDLTALDLATQGH 249
            Q  ALK   Q  N  CADC    P+WVS+N+GV+VC+ CSGVHRSLG HVSK+RS+ LDD+    L+L+ +LGN++VN++ E+  P  + K   + +   R ++IK KY++K F                           +  + +   D+L   L   ++    NL   LEA+  GA+VD      ++ GRTPLH+A  +G  +  AV  L+QNGA+  ++DRD  TA +LA + H
Sbjct:  504 QKRALKKEIQDANLHCADCGKKEPEWVSINMGVLVCISCSGVHRSLGTHVSKVRSIVLDDIPLSTLSLLHQLGNSKVNELLEHTIPSDYVKCDQNSEGHEREKFIKGKYMFKLF---------------------------INPSNRKSHDELNGQLF--QSAKTENLLSILEAICYGANVDCVSSDPSQNGRTPLHVATLEGKGL--AVELLLQNGASHLIKDRDGKTARELAMEMH 710          
BLAST of EWM24918.1 vs. NCBI_GenBank
Match: gi|1083278684|ref|XP_018587646.1| (PREDICTED: arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3-like isoform X4 [Scleropages formosus])

HSP 1 Score: 150.214 bits (378), Expect = 3.827e-38
Identity = 93/237 (39.24%), Postives = 129/237 (54.43%), Query Frame = 0
Query:   24 NPLCADCEAPHPDWVSLNLGVVVCLQCSGVHRSLGVHVSKIRSLALDDVDPVDLALVSRLGNTRVNKVYEYQFPDGWR-KPRPHEDRSARAQYIKAKYVWKGFTCIVSDGVGSAAGENNGGRSEIAEAIDLGVAGKAKDDKLGNSLMLVKAVMENNLEGALEALVQGADVDWTGGTENEKGRTPLHLAARQGDEVVEAVAFLVQNGANVGLRDRDDLTALDLATQGHHALTVQYLLK 259
            N  C DC A  P W SLNLG+ +C++CSG+HRSLGVH+SK+RSL LD  DP  L L+  LGN  +N +YE Q  +  R KP P   R  +  +I+ KYV K F   V + + +  G+              G +  A++++      L +A  + +L     AL QGA+V+W+     ++GRTPL +AA  G  ++ A  FL+QNGANV  RD+    AL  A    H   V  LLK
Sbjct:  291 NQHCCDCGAEEPRWASLNLGITMCIECSGIHRSLGVHLSKVRSLTLDSWDPEQLKLLCVLGNDVINTIYEAQVSEKGRLKPSPDSQRQEKQTWIREKYVEKKF---VKEAITTCLGD--------------GDSQGAQEERERVGRRLYQAAQQGDLVSMATALAQGAEVNWSNA--EDEGRTPL-IAATCGGSLL-ACHFLLQNGANVNQRDQRGQGALHAAATRGHTGQVCLLLK 506          
BLAST of EWM24918.1 vs. NCBI_GenBank
Match: gi|1083278682|ref|XP_018587645.1| (PREDICTED: arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3-like isoform X3 [Scleropages formosus])

HSP 1 Score: 150.599 bits (379), Expect = 4.966e-38
Identity = 93/237 (39.24%), Postives = 129/237 (54.43%), Query Frame = 0
Query:   24 NPLCADCEAPHPDWVSLNLGVVVCLQCSGVHRSLGVHVSKIRSLALDDVDPVDLALVSRLGNTRVNKVYEYQFPDGWR-KPRPHEDRSARAQYIKAKYVWKGFTCIVSDGVGSAAGENNGGRSEIAEAIDLGVAGKAKDDKLGNSLMLVKAVMENNLEGALEALVQGADVDWTGGTENEKGRTPLHLAARQGDEVVEAVAFLVQNGANVGLRDRDDLTALDLATQGHHALTVQYLLK 259
            N  C DC A  P W SLNLG+ +C++CSG+HRSLGVH+SK+RSL LD  DP  L L+  LGN  +N +YE Q  +  R KP P   R  +  +I+ KYV K F   V + + +  G+              G +  A++++      L +A  + +L     AL QGA+V+W+     ++GRTPL +AA  G  ++ A  FL+QNGANV  RD+    AL  A    H   V  LLK
Sbjct:  404 NQHCCDCGAEEPRWASLNLGITMCIECSGIHRSLGVHLSKVRSLTLDSWDPEQLKLLCVLGNDVINTIYEAQVSEKGRLKPSPDSQRQEKQTWIREKYVEKKF---VKEAITTCLGD--------------GDSQGAQEERERVGRRLYQAAQQGDLVSMATALAQGAEVNWSNA--EDEGRTPL-IAATCGGSLL-ACHFLLQNGANVNQRDQRGQGALHAAATRGHTGQVCLLLK 619          
BLAST of EWM24918.1 vs. NCBI_GenBank
Match: gi|1083278680|ref|XP_018587644.1| (PREDICTED: arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2-like isoform X2 [Scleropages formosus])

HSP 1 Score: 150.599 bits (379), Expect = 7.051e-38
Identity = 93/237 (39.24%), Postives = 129/237 (54.43%), Query Frame = 0
Query:   24 NPLCADCEAPHPDWVSLNLGVVVCLQCSGVHRSLGVHVSKIRSLALDDVDPVDLALVSRLGNTRVNKVYEYQFPDGWR-KPRPHEDRSARAQYIKAKYVWKGFTCIVSDGVGSAAGENNGGRSEIAEAIDLGVAGKAKDDKLGNSLMLVKAVMENNLEGALEALVQGADVDWTGGTENEKGRTPLHLAARQGDEVVEAVAFLVQNGANVGLRDRDDLTALDLATQGHHALTVQYLLK 259
            N  C DC A  P W SLNLG+ +C++CSG+HRSLGVH+SK+RSL LD  DP  L L+  LGN  +N +YE Q  +  R KP P   R  +  +I+ KYV K F   V + + +  G+              G +  A++++      L +A  + +L     AL QGA+V+W+     ++GRTPL +AA  G  ++ A  FL+QNGANV  RD+    AL  A    H   V  LLK
Sbjct:  398 NQHCCDCGAEEPRWASLNLGITMCIECSGIHRSLGVHLSKVRSLTLDSWDPEQLKLLCVLGNDVINTIYEAQVSEKGRLKPSPDSQRQEKQTWIREKYVEKKF---VKEAITTCLGD--------------GDSQGAQEERERVGRRLYQAAQQGDLVSMATALAQGAEVNWSNA--EDEGRTPL-IAATCGGSLL-ACHFLLQNGANVNQRDQRGQGALHAAATRGHTGQVCLLLK 613          
BLAST of EWM24918.1 vs. NCBI_GenBank
Match: gi|1083278674|ref|XP_018587640.1| (PREDICTED: arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3-like isoform X1 [Scleropages formosus] >gi|1083278676|ref|XP_018587641.1| PREDICTED: arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3-like isoform X1 [Scleropages formosus] >gi|1083278678|ref|XP_018587642.1| PREDICTED: arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3-like isoform X1 [Scleropages formosus])

HSP 1 Score: 150.214 bits (378), Expect = 8.772e-38
Identity = 93/237 (39.24%), Postives = 129/237 (54.43%), Query Frame = 0
Query:   24 NPLCADCEAPHPDWVSLNLGVVVCLQCSGVHRSLGVHVSKIRSLALDDVDPVDLALVSRLGNTRVNKVYEYQFPDGWR-KPRPHEDRSARAQYIKAKYVWKGFTCIVSDGVGSAAGENNGGRSEIAEAIDLGVAGKAKDDKLGNSLMLVKAVMENNLEGALEALVQGADVDWTGGTENEKGRTPLHLAARQGDEVVEAVAFLVQNGANVGLRDRDDLTALDLATQGHHALTVQYLLK 259
            N  C DC A  P W SLNLG+ +C++CSG+HRSLGVH+SK+RSL LD  DP  L L+  LGN  +N +YE Q  +  R KP P   R  +  +I+ KYV K F   V + + +  G+              G +  A++++      L +A  + +L     AL QGA+V+W+     ++GRTPL +AA  G  ++ A  FL+QNGANV  RD+    AL  A    H   V  LLK
Sbjct:  404 NQHCCDCGAEEPRWASLNLGITMCIECSGIHRSLGVHLSKVRSLTLDSWDPEQLKLLCVLGNDVINTIYEAQVSEKGRLKPSPDSQRQEKQTWIREKYVEKKF---VKEAITTCLGD--------------GDSQGAQEERERVGRRLYQAAQQGDLVSMATALAQGAEVNWSNA--EDEGRTPL-IAATCGGSLL-ACHFLLQNGANVNQRDQRGQGALHAAATRGHTGQVCLLLK 619          
BLAST of EWM24918.1 vs. NCBI_GenBank
Match: gi|1049281317|ref|XP_017536995.1| (PREDICTED: arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3-like [Pygocentrus nattereri])

HSP 1 Score: 149.443 bits (376), Expect = 1.982e-37
Identity = 96/236 (40.68%), Postives = 120/236 (50.85%), Query Frame = 0
Query:   24 NPLCADCEAPHPDWVSLNLGVVVCLQCSGVHRSLGVHVSKIRSLALDDVDPVDLALVSRLGNTRVNKVYEYQFPDGWRKPRPHEDRSARAQYIKAKYVWKGFTCIVSDGVGSAAGENNGGRSEIAEAIDLGVAGKAKDDKLGNSLMLVKAVMENNLEGALEALVQGADVDWTGGTENEKGRTPLHLAARQGDEVVEAVAFLVQNGANVGLRDRDDLTALDLATQGHHALTVQYLLK 259
            N  C DC    P W S+NLG+ VC++CSG+HRSLGVH+SK+RSL LD  DP  L L+  LGN  +N +YE    DG  KP P   R  +  +I+ KYV + F   V     SA  EN          + + V  K           L +AV++  L     AL QGADV+W+     E GRT L  AA  G   + A  FL+QNGANV  RD+    AL  A    H   V  LLK
Sbjct:  397 NHRCCDCGEAEPRWASVNLGITVCIECSGIHRSLGVHLSKVRSLTLDSWDPEQLKLLCVLGNDVINSIYECSPSDGLTKPDPQSSRQVKEVWIRRKYVERSF---VKKDCESADAEN----------LKMRVGQK-----------LYQAVLDGELVTMATALAQGADVNWSN--PEEAGRTALIGAAIGGS--LLACEFLLQNGANVNYRDQHGQAALHAAATRGHTGQVCLLLK 604          
BLAST of EWM24918.1 vs. NCBI_GenBank
Match: gi|569365577|gb|ETO09355.1| (hypothetical protein RFI_28022, partial [Reticulomyxa filosa])

HSP 1 Score: 145.591 bits (366), Expect = 2.547e-37
Identity = 87/235 (37.02%), Postives = 123/235 (52.34%), Query Frame = 0
Query:   24 NPLCADCEAPHPDWVSLNLGVVVCLQCSGVHRSLGVHVSKIRSLALDDVDPVDLALVSRLGNTRVNKVYEYQFPDGWRKPRPHEDRSARAQYIK-------------AKYVWKGFTCIVSDGVGSAAGENNGGRSEIAEAIDLGVAGKAKDDKLGNSLMLVKAVMENNLEGALEALVQGADVDWTGGTENEKGRTPLHLAARQGDEVVEAVAFLVQNGANVGLRDRDDLTALDLA 245
            NP+CADC    P+WVS+N+GV+VC+ CSGVHRSLG HVSKIRS++LDD+    L L+ RLGN RVNK+ E+  P  + K       S  A Y+               KY++K F                           +  A +   ++L N  +L+++    +L   LEA+ QGA+VD      ++  RTPLH+A  Q   V  A+  L+QNGA+   +D+D  TA +LA
Sbjct:  194 NPICADCGKKEPEWVSINMGVMVCISCSGVHRSLGTHVSKIRSISLDDIHMSTLTLLHRLGNERVNKILEHTIPSDYEKC-----NSNSAGYVPKKFCIQKKKKKSYGKYMFKLF---------------------------INPASQKSHEELNN--LLLESTKSEDLLPMLEAICQGANVDCVSPDPSQNNRTPLHIATLQNKPV--ALELLLQNGASQSAKDKDGKTARELA 392          
BLAST of EWM24918.1 vs. NCBI_GenBank
Match: gi|700364450|ref|XP_009926862.1| (PREDICTED: arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X5 [Haliaeetus albicilla])

HSP 1 Score: 148.288 bits (373), Expect = 4.278e-37
Identity = 97/259 (37.45%), Postives = 129/259 (49.81%), Query Frame = 0
Query:   24 NPLCADCEAPHPDWVSLNLGVVVCLQCSGVHRSLGVHVSKIRSLALDDVDPVDLALVSRLGNTRVNKVYEYQFPD-GWRKPRPHEDRSARAQYIKAKYVWKGF-------TCIVSDGVG----SAAGENNGGRSEIAEAIDLGVAGKAKDDKLGNS-----------LMLVKAVMENNLEGALEALVQGADVDWTGGTENEKGRTPLHLAARQGDEVVEAVAFLVQNGANVGLRDRDDLTALDLATQGHHALTVQYLLK 259
            N  C DC    P W S+NLG+ +C++CSG+HRSLGVH SK+RSL LD  +P  L L+  LGN  +N++YE +    G +KP+P   R  +  YI+AKYV + F         ++  G      S   + + G  +   A + G A   + DK  +S           L L +A  E NL    EAL  GA+V+W    EN+   TPL  A R G  V     FL+QNGANV +RD      L  AT   H   V   LK
Sbjct:  374 NAACCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLDSWEPELLKLMCELGNGVINRIYEAKLEKVGVKKPQPGSQRQEKEAYIRAKYVERKFVERQPVSVSLLESGTKVLPQSQEEKRHSGPEKTLLAGEQGAASLKEGDKQESSVFCDSKQSSPGLQLYRAAFEKNLPDMAEALAHGAEVNWVNVEENKA--TPLIQAVRGGSLVT--CEFLLQNGANVNIRDMKGRGPLHHATVLGHTGQVCLFLK 628          
BLAST of EWM24918.1 vs. NCBI_GenBank
Match: gi|729740871|ref|XP_010566685.1| (PREDICTED: arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X5 [Haliaeetus leucocephalus])

HSP 1 Score: 147.902 bits (372), Expect = 8.452e-37
Identity = 97/259 (37.45%), Postives = 129/259 (49.81%), Query Frame = 0
Query:   24 NPLCADCEAPHPDWVSLNLGVVVCLQCSGVHRSLGVHVSKIRSLALDDVDPVDLALVSRLGNTRVNKVYEYQFPD-GWRKPRPHEDRSARAQYIKAKYVWKGF-------TCIVSDGVG----SAAGENNGGRSEIAEAIDLGVAGKAKDDKLGNS-----------LMLVKAVMENNLEGALEALVQGADVDWTGGTENEKGRTPLHLAARQGDEVVEAVAFLVQNGANVGLRDRDDLTALDLATQGHHALTVQYLLK 259
            N  C DC    P W S+NLG+ +C++CSG+HRSLGVH SK+RSL LD  +P  L L+  LGN  +N++YE +    G +KP+P   R  +  YI+AKYV + F         ++  G      S   + + G  +   A + G A   + DK  +S           L L +A  E NL    EAL  GA+V+W    EN+   TPL  A R G  V     FL+QNGANV +RD      L  AT   H   V   LK
Sbjct:  418 NAACCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLDSWEPELLKLMCELGNGVINRIYEAKLEKVGVKKPQPGSQRQEKEAYIRAKYVERKFVERQPVSVSLLESGTKVLPQSQEEKRHSGPEKSLLAGEQGAASLKEGDKQESSVFCDSKQSSPGLQLYRAAFEKNLPDMAEALAHGAEVNWVNVEENKA--TPLIQAVRGGSLVT--CEFLLQNGANVNIRDMKGRGPLHHATVLGHTGQVCLFLK 672          
The following BLAST results are available for this feature:
BLAST of EWM24918.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106546|gb|EWM24918.1|0.000e+0100.00ankyrin repeat-containing protein [Nannochloropsis... [more]
gi|569414493|gb|ETO25943.1|9.301e-3937.39hypothetical protein RFI_11195 [Reticulomyxa filos... [more]
gi|1083278684|ref|XP_018587646.1|3.827e-3839.24PREDICTED: arf-GAP with coiled-coil, ANK repeat an... [more]
gi|1083278682|ref|XP_018587645.1|4.966e-3839.24PREDICTED: arf-GAP with coiled-coil, ANK repeat an... [more]
gi|1083278680|ref|XP_018587644.1|7.051e-3839.24PREDICTED: arf-GAP with coiled-coil, ANK repeat an... [more]
gi|1083278674|ref|XP_018587640.1|8.772e-3839.24PREDICTED: arf-GAP with coiled-coil, ANK repeat an... [more]
gi|1049281317|ref|XP_017536995.1|1.982e-3740.68PREDICTED: arf-GAP with coiled-coil, ANK repeat an... [more]
gi|569365577|gb|ETO09355.1|2.547e-3737.02hypothetical protein RFI_28022, partial [Reticulom... [more]
gi|700364450|ref|XP_009926862.1|4.278e-3737.45PREDICTED: arf-GAP with coiled-coil, ANK repeat an... [more]
gi|729740871|ref|XP_010566685.1|8.452e-3737.45PREDICTED: arf-GAP with coiled-coil, ANK repeat an... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5776rna5776Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications