rna5773, rna5773 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5773
Unique Name	rna5773
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	768
Alignment location	CM002466.1:806363..807612 +

Link to JBrowse

Properties


Property Name	Value
Product	undecaprenyl diphosphate synthase
Orig transcript id	gnl\|cribi\|Naga_100092g12.2150.mrna
Orig protein id	gnl\|cribi\|Naga_100092g12.2150
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:806363..807612 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100092g12	gene5577	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5773	rna5773-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24927.1	cds5758	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:806363..807612+
coding sequence from alignment at CM002466.1:806363..807612+

mRNA sequence

>rna5773 ID=rna5773|Name=rna5773|organism=Nannochloropsis gaditana|type=mRNA|length=768bp
ATGACAGGCCTATTTCGCCATTTCTCAGTATGCCTGTATTTAGCTGTGCT
TTGCCACTCGGTTAGCACTGCATTTGCCTTCGCACCTCTATGCAAGTCTC
CTCTTAGCGCTACCATGGGCGGCACTGTTCGCAAAGGCACCATTCAGACG
ACACGCATGATGGCAGAACGATTCTACAACAAATGGAGTCGGGCGGATTT
TGTGCTGAAAAGCGCGCTAGCCGCGGCGGGAATTATCCCAGTCGTCAAAG
GAGGAGCGGTGGCAAGCAAAATCAAGGCGGAACACAGTGCCCCTGTCAAG
ACTAACAAAAAGCATTCGGATGAGAAGGATGACGAGGAGAAGTCGACACC
TCTCGCCTTTTCAACAGGTGTACCCCTCCGTTATCCCTTGCACAAAAGCC
AGTACGAGGCTCGCCGTGAGCTGCAAGATGTTGTAGCCCGGGTCGGAGGA
CGCTTGACGGATTTTCGCGGCACCAAAGCTGGTCTTTTTCGTGCTACCTT
TGACCTTCATCGCCTCCAAGAGTTACACTTTGAATTTGGTGGTGATGGAG
GGAGTAGCGGGTACAGCCGTGTGTTGCAAGCACATGTAGGAGCGGGCGTT
GACGACATGCGTTTGATCAACGCTTTGGCGGATGGACTGGCGTCCAAGGG
ATGGCTTACCGCTGGCTTTCCATTGTCTTGTGATCCAGCTATGGCACAGT
ACCTACGCCATCGTAACGAGGGACGCTGTACAAGCCGAGGGCGAGCAATG
AGCAAAGCCCCATGCTAG

protein sequence of rna5773

>rna5773-protein ID=rna5773-protein|Name=rna5773|organism=Nannochloropsis gaditana|type=polypeptide|length=351bp
MVKMSRKRPLFSPLRALFSVAVPYLASALLFFGLKGVRVVALRKSELSSV
GRTGFLVYGGSHPRRYQHSAFVHQNNHHYHEFKEPIDEVRILPRNVEVPK
HVAFILDGNGRWAEKQGLPRGAGHREGAKRALEVLQSCQALGIRTVTLYC
LSTENWSRPAAEISVILACVETTLRTNLQYAHDNRIRLVVIGQSHRLPPN
LQALVSQAERETALYTEGMTVCLALSYGGRDDIVQASRTLAEQAAMGEIQ
PQDIDEALFESCLSTGVKGVDGAPDLVIRTSGEQRWSNFMLFECAYSEFY
VADVLWPDFQEPDLLAALESYGMRRRRFGGVREKRSALETEQVVGARRGD
M

mRNA from alignment at CM002466.1:806363..807612+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5773 ID=rna5773|Name=rna5773|organism=Nannochloropsis gaditana|type=mRNA|length=1250bp|location=Sequence derived from alignment at CM002466.1:806363..807612+ (Nannochloropsis gaditana)
ATGGTGAAAATGTCAAGAAAGAGACCACTTTTTTCGCCTCTGCGCGCACT
TTTCTCTGTAGCTGTACCATACTTAGCCTCTGCATTGCTTTTCTTCGGCT
TGAAAGGCGTGAGAGTTGTCGCGTTGAGGAAATCAGAATTATCCAGCGTA
GGCAGAACGGGCTTCTTAGTGTATGGCGGATCCCATCCTCGGCGCTACCA
ACACAGCGCCTTTGTCCACCAAAATAATCATCATTACCATGAATTCAAGG
AGCCTATCGATGAAGTACGGATATTGCCACGAAATGTGGAGGTTCCAAAG
CACGTAGCTTTCATCTTGGACGGCAATGGACGGTGGTAAGTCACCTCATC
TCATGATGTCACTCGTAGCATATATCTCATCCGCGTTGTACCTGCAAACG
TAGGGCTGAAAAACAAGGATTACCACGCGGTGCTGGCCACAGAGAAGGTG
CCAAACGAGCTCTCGAGGTCCTCCAGAGTTGTCAGGTCTGAATTGGGAAA
GGACATCGGATGGGGGTTTCGGCAGACGGCGACAACAAATGAAGCGATGC
CTGATTAAATGTGGCCGTCTGCGACTTCATTTCCACTCACACTCGAAACC
TGCTTGCATAGGCTTTAGGAATTAGAACTGTAACACTCTATTGTCTGAGC
ACGGAAAACTGGAGCCGGCCCGCGGCTGAGATCTCCGTCATCCTGGCTTG
CGTGGAGACGACGCTGCGGACCAATCTGCAATACGCGCACGACAATCGCA
TCCGCCTTGTCGTCATCGGGCAGAGTCATCGGCTTCCTCCTAATTTGCAG
GCTTTGGTGTCAcaggccgagagggagacggcccTCTATACGGAAGGGAT
GACCGTCTGCCTGGCCCTTAGctatggaggaagggatgataTCGTGCAGG
CCTCTCGCACACTGGCAGAGCAAGCAGCAATGGGAGAGATACAGCCACAG
GACATTGATGAAGCCCTCTTCGAATCCTGCCTGTCTACGGGCGTGAAGGG
AGTTGACGGAGCCCCCGACCTGGTCATCCGTACCTCCGGGGAGCAACGAT
GGAGCAATTTCATGCTTTTTGAGTGTGCGTATTCCGAATTTTATGTCGCA
GACGTCCTATGGCCCGACTTCCAGGAGCCGGATTTATTGGCTGCCTTGGA
GAGTTACGGGATGCGACGCCGTCGGTTTGGCGGCgtgagagagaagagat
CGGCATTGGAAACAGAGCAGGTGGTTGGGGCGCGTAGAGGGGACATGTAA

Coding sequence (CDS) from alignment at CM002466.1:806363..807612+

>rna5773 ID=rna5773|Name=rna5773|organism=Nannochloropsis gaditana|type=CDS|length=3168bp|location=Sequence derived from alignment at CM002466.1:806363..807612+ (Nannochloropsis gaditana)
ATGGTGAAAATGTCAAGAAAGAGACCACTTTTTTCGCCTCTGCGCGCACT
TTTCTCTGTAGCTGTACCATACTTAGCCTCTGCATTGCTTTTCTTCGGCT
TGAAAGGCGTGAGAGTTGTCGCGTTGAGGAAATCAGAATTATCCAGCGTA
GGCAGAACGGGCTTCTTAGTGTATGGCGGATCCCATCCTCGGCGCTACCA
ACACAGCGCCTTTGTCCACCAAAATAATCATCATTACCATGAATTCAAGG
AGCCTATCGATGAAGTACGGATATTGCCACGAAATGTGGAGGTTCCAAAG
CACGTAGCTTTCATCTTGGACGGCAATGGACGGTGGGCTGAAAAACAAGG
ATTACCACGCGGTGCTGGCCACAGAGAAGGTGCCAAACGAGCTCTCGAGG
TCCTCCAGAGTTGTCAGGCTTTAGGAATTAGAACTGTAACACTCTATTGT
CTGAGCACGGAAAACTGGAGCCGGCCCGCGGCTGAGATCTCCGTCATCCT
GGCTTGCGTGGAGACGACGCTGCGGACCAATCTGCAATACGCGCACGACA
ATCGCATCCGCCTTGTCGTCATCGGGCAGAGTCATCGGCTTCCTCCTAAT
TTGCAGGCTTTGGTGTCAcaggccgagagggagacggcccTCTATACGGA
AGGGATGACCGTCTGCCTGGCCCTTAGctatggaggaagggatgataTCG
TGCAGGCCTCTCGCACACTGGCAGAGCAAGCAGCAATGGGAGAGATACAG
CCACAGGACATTGATGAAGCCCTCTTCGAATCCTGCCTGTCTACGGGCGT
GAAGGGAGTTGACGGAGCCCCCGACCTGGTCATCCGTACCTCCGGGGAGC
AACGATGGAGCAATTTCATGCTTTTTGAGTGTGCGTATTCCGAATTTTAT
GTCGCAGACGTCCTATGGCCCGACTTCCAGGAGCCGGATTTATTGGCTGC
CTTGGAGAGTTACGGGATGCGACGCCGTCGGTTTGGCGGCgtgagagaga
agagatCGGCATTGGAAACAGAGCAGGTGGTTGGGGCGCGTAGAGGGGAC
ATGTAAATGGTGAAAATGTCAAGAAAGAGACCACTTTTTTCGCCTCTGCG
CGCACTTTTCTCTGTAGCTGTACCATACTTAGCCTCTGCATTGCTTTTCT
TCGGCTTGAAAGGCGTGAGAGTTGTCGCGTTGAGGAAATCAGAATTATCC
AGCGTAGGCAGAACGGGCTTCTTAGTGTATGGCGGATCCCATCCTCGGCG
CTACCAACACAGCGCCTTTGTCCACCAAAATAATCATCATTACCATGAAT
TCAAGGAGCCTATCGATGAAGTACGGATATTGCCACGAAATGTGGAGGTT
CCAAAGCACGTAGCTTTCATCTTGGACGGCAATGGACGGTGGGCTGAAAA
ACAAGGATTACCACGCGGTGCTGGCCACAGAGAAGGTGCCAAACGAGCTC
TCGAGGTCCTCCAGAGTTGTCAGGCTTTAGGAATTAGAACTGTAACACTC
TATTGTCTGAGCACGGAAAACTGGAGCCGGCCCGCGGCTGAGATCTCCGT
CATCCTGGCTTGCGTGGAGACGACGCTGCGGACCAATCTGCAATACGCGC
ACGACAATCGCATCCGCCTTGTCGTCATCGGGCAGAGTCATCGGCTTCCT
CCTAATTTGCAGGCTTTGGTGTCAcaggccgagagggagacggcccTCTA
TACGGAAGGGATGACCGTCTGCCTGGCCCTTAGctatggaggaagggatg
ataTCGTGCAGGCCTCTCGCACACTGGCAGAGCAAGCAGCAATGGGAGAG
ATACAGCCACAGGACATTGATGAAGCCCTCTTCGAATCCTGCCTGTCTAC
GGGCGTGAAGGGAGTTGACGGAGCCCCCGACCTGGTCATCCGTACCTCCG
GGGAGCAACGATGGAGCAATTTCATGCTTTTTGAGTGTGCGTATTCCGAA
TTTTATGTCGCAGACGTCCTATGGCCCGACTTCCAGGAGCCGGATTTATT
GGCTGCCTTGGAGAGTTACGGGATGCGACGCCGTCGGTTTGGCGGCgtga
gagagaagagatCGGCATTGGAAACAGAGCAGGTGGTTGGGGCGCGTAGA
GGGGACATGTAAATGGTGAAAATGTCAAGAAAGAGACCACTTTTTTCGCC
TCTGCGCGCACTTTTCTCTGTAGCTGTACCATACTTAGCCTCTGCATTGC
TTTTCTTCGGCTTGAAAGGCGTGAGAGTTGTCGCGTTGAGGAAATCAGAA
TTATCCAGCGTAGGCAGAACGGGCTTCTTAGTGTATGGCGGATCCCATCC
TCGGCGCTACCAACACAGCGCCTTTGTCCACCAAAATAATCATCATTACC
ATGAATTCAAGGAGCCTATCGATGAAGTACGGATATTGCCACGAAATGTG
GAGGTTCCAAAGCACGTAGCTTTCATCTTGGACGGCAATGGACGGTGGGC
TGAAAAACAAGGATTACCACGCGGTGCTGGCCACAGAGAAGGTGCCAAAC
GAGCTCTCGAGGTCCTCCAGAGTTGTCAGGCTTTAGGAATTAGAACTGTA
ACACTCTATTGTCTGAGCACGGAAAACTGGAGCCGGCCCGCGGCTGAGAT
CTCCGTCATCCTGGCTTGCGTGGAGACGACGCTGCGGACCAATCTGCAAT
ACGCGCACGACAATCGCATCCGCCTTGTCGTCATCGGGCAGAGTCATCGG
CTTCCTCCTAATTTGCAGGCTTTGGTGTCAcaggccgagagggagacggc
ccTCTATACGGAAGGGATGACCGTCTGCCTGGCCCTTAGctatggaggaa
gggatgataTCGTGCAGGCCTCTCGCACACTGGCAGAGCAAGCAGCAATG
GGAGAGATACAGCCACAGGACATTGATGAAGCCCTCTTCGAATCCTGCCT
GTCTACGGGCGTGAAGGGAGTTGACGGAGCCCCCGACCTGGTCATCCGTA
CCTCCGGGGAGCAACGATGGAGCAATTTCATGCTTTTTGAGTGTGCGTAT
TCCGAATTTTATGTCGCAGACGTCCTATGGCCCGACTTCCAGGAGCCGGA
TTTATTGGCTGCCTTGGAGAGTTACGGGATGCGACGCCGTCGGTTTGGCG
GCgtgagagagaagagatCGGCATTGGAAACAGAGCAGGTGGTTGGGGCG
CGTAGAGGGGACATGTAA

Synonyms

Publications